Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2426 |
| AarI | CACCTGC | 1 cut(s) | 1955 |
| Acc36I | ACCTGC | 1 cut(s) | 1955 |
| AccB1I | GGYRCC | 1 cut(s) | 603 |
| AccII | CGCG | 1 cut(s) | 9 |
| AciI | CCGC | 2 cut(s) | 1453, 1487 |
| AclWI | GGATC | 6 cut(s) | 217, 1329, 2306, 2351, 2364, 2383 |
| AcoI | YGGCCR | 4 cut(s) | 625, 792, 1260, 2089 |
| AcsI | RAATTY | 6 cut(s) | 130, 433, 685, 719, 1043, 1912 |
| AcuI | CTGAAG | 2 cut(s) | 137, 1422 |
| AcvI | CACGTG | 1 cut(s) | 260 |
| AcyI | GRCGYC | 1 cut(s) | 2395 |
| AfaI | GTAC | 5 cut(s) | 199, 734, 811, 1754, 2366 |
| AfeI | AGCGCT | 1 cut(s) | 2352 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1269, 1774, 2107, 2398 |
| AflII | CTTAAG | 2 cut(s) | 1142, 1445 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1606 |
| AjnI | CCWGG | 3 cut(s) | 409, 469, 2397 |
| Alw21I | GWGCWC | 2 cut(s) | 1117, 1422 |
| Alw26I | GTCTC | 4 cut(s) | 1391, 1418, 2225, 2562 |
| AlwI | GGATC | 6 cut(s) | 217, 1329, 2306, 2351, 2364, 2383 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1534, 1714 |
| Ama87I | CYCGRG | 1 cut(s) | 1421 |
| Aor51HI | AGCGCT | 1 cut(s) | 2352 |
| AoxI | GGCC | 4 cut(s) | 625, 792, 1260, 2089 |
| ApeKI | GCWGC | 9 cut(s) | 16, 71, 496, 539, 740, 1573, 1708, 1843, 2348 |
| ApoI | RAATTY | 6 cut(s) | 130, 433, 685, 719, 1043, 1912 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 28, 60 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 117, 1585 |
| AspLEI | GCGC | 3 cut(s) | 9, 312, 2353 |
| AspS9I | GGNCC | 1 cut(s) | 2162 |
| AsuC2I | CCSGG | 2 cut(s) | 1769, 2221 |
| AsuHPI | GGTGA | 7 cut(s) | 425, 667, 1520, 1979, 2090, 2122, 2509 |
| AvaI | CYCGRG | 1 cut(s) | 1421 |
| AvaII | GGWCC | 1 cut(s) | 2162 |
| BaeGI | GKGCMC | 1 cut(s) | 1286 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 189, 222 |
| BalI | TGGCCA | 3 cut(s) | 794, 1262, 2091 |
| BamHI | GGATCC | 1 cut(s) | 2356 |
| BanI | GGYRCC | 1 cut(s) | 603 |
| BanII | GRGCYC | 2 cut(s) | 1117, 1422 |
| BauI | CACGAG | 1 cut(s) | 75 |
| BbrPI | CACGTG | 1 cut(s) | 260 |
| BbsI | GAAGAC | 1 cut(s) | 1668 |
| Bbv12I | GWGCWC | 2 cut(s) | 1117, 1422 |
| BbvI | GCAGC | 9 cut(s) | 28, 58, 483, 526, 727, 1585, 1720, 1830, 2360 |
| BccI | CCATC | 3 cut(s) | 809, 2117, 2153 |
| BceAI | ACGGC | 3 cut(s) | 612, 675, 2487 |
| BciT130I | CCWGG | 3 cut(s) | 411, 471, 2399 |
| BciVI | GTATCC | 1 cut(s) | 2138 |
| BclI | TGATCA | 5 cut(s) | 397, 886, 1240, 1297, 2545 |
| BcnI | CCSGG | 2 cut(s) | 1769, 2221 |
| BcoDI | GTCTC | 4 cut(s) | 1391, 1418, 2225, 2562 |
| BfaI | CTAG | 6 cut(s) | 651, 821, 1254, 1545, 1703, 2049 |
| BfmI | CTRYAG | 2 cut(s) | 451, 525 |
| BfoI | RGCGCY | 1 cut(s) | 2354 |
| BfrI | CTTAAG | 2 cut(s) | 1142, 1445 |
| BfuAI | ACCTGC | 1 cut(s) | 1955 |
| BfuI | GTATCC | 1 cut(s) | 2138 |
| BglII | AGATCT | 6 cut(s) | 447, 781, 1075, 1354, 2177, 2469 |
| BisI | GCNGC | 9 cut(s) | 17, 72, 497, 540, 741, 1574, 1709, 1844, 2349 |
| BlpI | GCTNAGC | 2 cut(s) | 20, 1107 |
| BlsI | GCNGC | 9 cut(s) | 18, 73, 498, 541, 742, 1575, 1710, 1845, 2350 |
| BmcAI | AGTACT | 1 cut(s) | 1754 |
| Bme1390I | CCNGG | 5 cut(s) | 411, 471, 1769, 2221, 2399 |
| Bme18I | GGWCC | 1 cut(s) | 2162 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1606 |
| BmeT110I | CYCGRG | 1 cut(s) | 1421 |
| BmgT120I | GGNCC | 1 cut(s) | 2162 |
| BmiI | GGNNCC | 4 cut(s) | 605, 663, 699, 2358 |
| BmrFI | CCNGG | 5 cut(s) | 411, 471, 1769, 2221, 2399 |
| BmrI | ACTGGG | 1 cut(s) | 49 |
| BmsI | GCATC | 9 cut(s) | 288, 837, 1093, 1531, 1552, 1783, 1841, 1951, 2335 |
| BmuI | ACTGGG | 1 cut(s) | 49 |
| BpiI | GAAGAC | 1 cut(s) | 1668 |
| BpmI | CTGGAG | 1 cut(s) | 1922 |
| Bpu10I | CCTNAGC | 1 cut(s) | 750 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 20, 1107 |
| BpuEI | CTTGAG | 2 cut(s) | 986, 1315 |
| BpuMI | CCSGG | 2 cut(s) | 1769, 2221 |
| BsaAI | YACGTR | 1 cut(s) | 260 |
| BsaHI | GRCGYC | 1 cut(s) | 2395 |
| BsaJI | CCNNGG | 4 cut(s) | 234, 470, 665, 2092 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 834, 864 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1269, 1774, 2107, 2398 |
| Bse1I | ACTGG | 6 cut(s) | 55, 1067, 1137, 1903, 1962, 2554 |
| Bse3DI | GCAATG | 2 cut(s) | 1861, 2312 |
| BseBI | CCWGG | 3 cut(s) | 411, 471, 2399 |
| BseDI | CCNNGG | 4 cut(s) | 234, 470, 665, 2092 |
| BseGI | GGATG | 8 cut(s) | 163, 793, 1639, 1693, 1966, 2020, 2128, 2155 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1269, 1774, 2107, 2398 |
| BseMI | GCAATG | 2 cut(s) | 1861, 2312 |
| BseNI | ACTGG | 6 cut(s) | 55, 1067, 1137, 1903, 1962, 2554 |
| BseRI | GAGGAG | 1 cut(s) | 436 |
| BseSI | GKGCMC | 1 cut(s) | 1286 |
| BseXI | GCAGC | 9 cut(s) | 28, 58, 483, 526, 727, 1585, 1720, 1830, 2360 |
| BseYI | CCCAGC | 2 cut(s) | 542, 1090 |
| BsgI | GTGCAG | 2 cut(s) | 1247, 1829 |
| Bsh1236I | CGCG | 1 cut(s) | 9 |
| BshFI | GGCC | 4 cut(s) | 627, 794, 1262, 2091 |
| BshNI | GGYRCC | 1 cut(s) | 603 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1117, 1422 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1421 |
| BsiSI | CCGG | 2 cut(s) | 1768, 2220 |
| BslFI | GGGAC | 1 cut(s) | 305 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1269, 1774, 2107, 2398 |
| BsmAI | GTCTC | 4 cut(s) | 1391, 1418, 2225, 2562 |
| BsmFI | GGGAC | 1 cut(s) | 305 |
| BsmI | GAATGC | 2 cut(s) | 937, 1165 |
| BsnI | GGCC | 4 cut(s) | 627, 794, 1262, 2091 |
| BsoBI | CYCGRG | 1 cut(s) | 1421 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1117, 1286, 1422 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 20, 1107 |
| Bsp19I | CCATGG | 2 cut(s) | 234, 2092 |
| BspACI | CCGC | 2 cut(s) | 1453, 1487 |
| BspANI | GGCC | 4 cut(s) | 627, 794, 1262, 2091 |
| BspFNI | CGCG | 1 cut(s) | 9 |
| BspLI | GGNNCC | 4 cut(s) | 605, 663, 699, 2358 |
| BspMAI | CTGCAG | 2 cut(s) | 455, 529 |
| BspMI | ACCTGC | 1 cut(s) | 1955 |
| BspPI | GGATC | 6 cut(s) | 217, 1329, 2306, 2351, 2364, 2383 |
| BspQI | GCTCTTC | 1 cut(s) | 383 |
| BspT107I | GGYRCC | 1 cut(s) | 603 |
| BspTI | CTTAAG | 2 cut(s) | 1142, 1445 |
| BsrDI | GCAATG | 2 cut(s) | 1861, 2312 |
| BsrI | ACTGG | 6 cut(s) | 55, 1067, 1137, 1903, 1962, 2554 |
| BssECI | CCNNGG | 4 cut(s) | 234, 470, 665, 2092 |
| BssNI | GRCGYC | 1 cut(s) | 2395 |
| BssSI | CACGAG | 1 cut(s) | 75 |
| BssT1I | CCWWGG | 3 cut(s) | 234, 665, 2092 |
| Bst2BI | CACGAG | 1 cut(s) | 75 |
| Bst2UI | CCWGG | 3 cut(s) | 411, 471, 2399 |
| Bst4CI | ACNGT | 4 cut(s) | 769, 1604, 1872, 2272 |
| Bst6I | CTCTTC | 6 cut(s) | 258, 383, 704, 1262, 1576, 1743 |
| BstACI | GRCGYC | 1 cut(s) | 2395 |
| BstAFI | CTTAAG | 2 cut(s) | 1142, 1445 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1840 |
| BstBAI | YACGTR | 1 cut(s) | 260 |
| BstC8I | GCNNGC | 2 cut(s) | 1113, 1950 |
| BstDSI | CCRYGG | 2 cut(s) | 234, 2092 |
| BstEII | GGTNACC | 1 cut(s) | 2096 |
| BstF5I | GGATG | 8 cut(s) | 163, 793, 1639, 1693, 1966, 2020, 2128, 2155 |
| BstFNI | CGCG | 1 cut(s) | 9 |
| BstH2I | RGCGCY | 1 cut(s) | 2354 |
| BstHHI | GCGC | 3 cut(s) | 9, 312, 2353 |
| BstMAI | GTCTC | 4 cut(s) | 1391, 1418, 2225, 2562 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 13, 307, 746, 1112, 1259, 1412, 1708, 1840 |
| BstNI | CCWGG | 3 cut(s) | 411, 471, 2399 |
| BstNSI | RCATGY | 1 cut(s) | 1380 |
| BstPI | GGTNACC | 1 cut(s) | 2096 |
| BstSCI | CCNGG | 5 cut(s) | 409, 469, 1767, 2219, 2397 |
| BstSFI | CTRYAG | 2 cut(s) | 451, 525 |
| BstSLI | GKGCMC | 1 cut(s) | 1286 |
| BstUI | CGCG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 9 cut(s) | 28, 58, 483, 526, 727, 1585, 1720, 1830, 2360 |
| BstV2I | GAAGAC | 1 cut(s) | 1668 |
| BstX2I | RGATCY | 9 cut(s) | 209, 447, 781, 1075, 1321, 1354, 2177, 2356, 2469 |
| BstYI | RGATCY | 9 cut(s) | 209, 447, 781, 1075, 1321, 1354, 2177, 2356, 2469 |
| BsuI | GTATCC | 1 cut(s) | 2138 |
| BsuRI | GGCC | 4 cut(s) | 627, 794, 1262, 2091 |
| BtgI | CCRYGG | 2 cut(s) | 234, 2092 |
| BtsCI | GGATG | 8 cut(s) | 163, 793, 1639, 1693, 1966, 2020, 2128, 2155 |
| BtsI | GCAGTG | 2 cut(s) | 534, 735 |
| BtsIMutI | CAGTG | 4 cut(s) | 534, 614, 735, 1284 |
| BveI | ACCTGC | 1 cut(s) | 1955 |
| Cac8I | GCNNGC | 2 cut(s) | 1113, 1950 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1534, 1714 |
| CfoI | GCGC | 3 cut(s) | 9, 312, 2353 |
| Cfr13I | GGNCC | 1 cut(s) | 2162 |
| CseI | GACGC | 2 cut(s) | 2293, 2403 |
| Csp6I | GTAC | 5 cut(s) | 198, 733, 810, 1753, 2365 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 784, 819, 844, 879 |
| CviQI | GTAC | 5 cut(s) | 198, 733, 810, 1753, 2365 |
| DraI | TTTAAA | 1 cut(s) | 2038 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1606 |
| EaeI | YGGCCR | 4 cut(s) | 625, 792, 1260, 2089 |
| Eam1104I | CTCTTC | 6 cut(s) | 258, 383, 704, 1262, 1576, 1743 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1606 |
| EarI | CTCTTC | 6 cut(s) | 258, 383, 704, 1262, 1576, 1743 |
| EciI | GGCGGA | 1 cut(s) | 1468 |
| Ecl136II | GAGCTC | 2 cut(s) | 1115, 1420 |
| Eco130I | CCWWGG | 3 cut(s) | 234, 665, 2092 |
| Eco24I | GRGCYC | 2 cut(s) | 1117, 1422 |
| Eco32I | GATATC | 1 cut(s) | 994 |
| Eco47I | GGWCC | 1 cut(s) | 2162 |
| Eco47III | AGCGCT | 1 cut(s) | 2352 |
| Eco53kI | GAGCTC | 2 cut(s) | 1115, 1420 |
| Eco57I | CTGAAG | 2 cut(s) | 137, 1422 |
| Eco72I | CACGTG | 1 cut(s) | 260 |
| Eco88I | CYCGRG | 1 cut(s) | 1421 |
| Eco91I | GGTNACC | 1 cut(s) | 2096 |
| EcoICRI | GAGCTC | 2 cut(s) | 1115, 1420 |
| EcoO65I | GGTNACC | 1 cut(s) | 2096 |
| EcoRII | CCWGG | 3 cut(s) | 409, 469, 2397 |
| EcoRV | GATATC | 1 cut(s) | 994 |
| EcoT14I | CCWWGG | 3 cut(s) | 234, 665, 2092 |
| EcoT38I | GRGCYC | 2 cut(s) | 1117, 1422 |
| ErhI | CCWWGG | 3 cut(s) | 234, 665, 2092 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 658, 690, 948, 980, 1353, 1385 |
| FaqI | GGGAC | 1 cut(s) | 305 |
| FbaI | TGATCA | 5 cut(s) | 397, 886, 1240, 1297, 2545 |
| Fnu4HI | GCNGC | 9 cut(s) | 17, 72, 497, 540, 741, 1574, 1709, 1844, 2349 |
| FokI | GGATG | 8 cut(s) | 170, 800, 1646, 1700, 1973, 2027, 2135, 2162 |
| FriOI | GRGCYC | 2 cut(s) | 1117, 1422 |
| Fsp4HI | GCNGC | 9 cut(s) | 17, 72, 497, 540, 741, 1574, 1709, 1844, 2349 |
| FspBI | CTAG | 6 cut(s) | 651, 821, 1254, 1545, 1703, 2049 |
| GlaI | GCGC | 3 cut(s) | 8, 311, 2352 |
| GluI | GCNGC | 9 cut(s) | 17, 72, 497, 540, 741, 1574, 1709, 1844, 2349 |
| GsaI | CCCAGC | 2 cut(s) | 546, 1094 |
| GsuI | CTGGAG | 1 cut(s) | 1922 |
| HaeII | RGCGCY | 1 cut(s) | 2354 |
| HaeIII | GGCC | 4 cut(s) | 627, 794, 1262, 2091 |
| HapII | CCGG | 2 cut(s) | 1768, 2220 |
| HgaI | GACGC | 2 cut(s) | 2293, 2403 |
| HhaI | GCGC | 3 cut(s) | 9, 312, 2353 |
| Hin1I | GRCGYC | 1 cut(s) | 2395 |
| Hin6I | GCGC | 3 cut(s) | 7, 310, 2351 |
| HinP1I | GCGC | 3 cut(s) | 7, 310, 2351 |
| HincII | GTYRAC | 1 cut(s) | 2283 |
| HindII | GTYRAC | 1 cut(s) | 2283 |
| HindIII | AAGCTT | 2 cut(s) | 149, 1367 |
| HinfI | GANTC | 5 cut(s) | 916, 1231, 1306, 2018, 2233 |
| HpaII | CCGG | 2 cut(s) | 1768, 2220 |
| HphI | GGTGA | 7 cut(s) | 425, 667, 1520, 1979, 2090, 2122, 2509 |
| Hpy166II | GTNNAC | 4 cut(s) | 532, 735, 1885, 2283 |
| Hpy8I | GTNNAC | 4 cut(s) | 532, 735, 1885, 2283 |
| Hpy99I | CGWCG | 1 cut(s) | 2397 |
| HpyAV | CCTTC | 9 cut(s) | 373, 833, 853, 1165, 1312, 1809, 1938, 2005, 2111 |
| HpyCH4III | ACNGT | 4 cut(s) | 769, 1604, 1872, 2272 |
| HpyCH4IV | ACGT | 7 cut(s) | 169, 204, 259, 534, 635, 1805, 1927 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 13, 307, 746, 1112, 1259, 1412, 1708, 1840 |
| HpySE526I | ACGT | 7 cut(s) | 169, 204, 259, 534, 635, 1805, 1927 |
| Hsp92I | GRCGYC | 1 cut(s) | 2395 |
| HspAI | GCGC | 3 cut(s) | 7, 310, 2351 |
| Ksp22I | TGATCA | 5 cut(s) | 397, 886, 1240, 1297, 2545 |
| LguI | GCTCTTC | 1 cut(s) | 383 |
| LmnI | GCTCC | 3 cut(s) | 4, 667, 2323 |
| Lsp1109I | GCAGC | 9 cut(s) | 28, 58, 483, 526, 727, 1585, 1720, 1830, 2360 |
| LweI | GCATC | 9 cut(s) | 288, 837, 1093, 1531, 1552, 1783, 1841, 1951, 2335 |
| MaeI | CTAG | 6 cut(s) | 651, 821, 1254, 1545, 1703, 2049 |
| MaeII | ACGT | 7 cut(s) | 169, 204, 259, 534, 635, 1805, 1927 |
| MaeIII | GTNAC | 7 cut(s) | 77, 255, 631, 655, 670, 2096, 2479 |
| MflI | RGATCY | 9 cut(s) | 209, 447, 781, 1075, 1321, 1354, 2177, 2356, 2469 |
| MhlI | GDGCHC | 3 cut(s) | 1117, 1286, 1422 |
| MlsI | TGGCCA | 3 cut(s) | 794, 1262, 2091 |
| MluNI | TGGCCA | 3 cut(s) | 794, 1262, 2091 |
| MlyI | GAGTC | 3 cut(s) | 1225, 1300, 2227 |
| MmeI | TCCRAC | 5 cut(s) | 187, 949, 2359, 2416, 2464 |
| Mox20I | TGGCCA | 3 cut(s) | 794, 1262, 2091 |
| MroXI | GAANNNNTTC | 2 cut(s) | 117, 1585 |
| MscI | TGGCCA | 3 cut(s) | 794, 1262, 2091 |
| MslI | CAYNNNNRTG | 1 cut(s) | 980 |
| Msp20I | TGGCCA | 3 cut(s) | 794, 1262, 2091 |
| MspCI | CTTAAG | 2 cut(s) | 1142, 1445 |
| MspI | CCGG | 2 cut(s) | 1768, 2220 |
| MspR9I | CCNGG | 5 cut(s) | 411, 471, 1769, 2221, 2399 |
| Mva1269I | GAATGC | 2 cut(s) | 937, 1165 |
| MvaI | CCWGG | 3 cut(s) | 411, 471, 2399 |
| MvnI | CGCG | 1 cut(s) | 9 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 13, 307, 746, 1112, 1259, 1412, 1708, 1840 |
| NciI | CCSGG | 2 cut(s) | 1769, 2221 |
| NcoI | CCATGG | 2 cut(s) | 234, 2092 |
| NlaIV | GGNNCC | 4 cut(s) | 605, 663, 699, 2358 |
| NmuCI | GTSAC | 4 cut(s) | 77, 255, 655, 2096 |
| NspI | RCATGY | 1 cut(s) | 1380 |
| PaeR7I | CTCGAG | 1 cut(s) | 1421 |
| PaqCI | CACCTGC | 1 cut(s) | 1955 |
| PciSI | GCTCTTC | 1 cut(s) | 383 |
| PctI | GAATGC | 2 cut(s) | 937, 1165 |
| PdmI | GAANNNNTTC | 2 cut(s) | 117, 1585 |
| PfeI | GAWTC | 2 cut(s) | 916, 2018 |
| PflFI | GACNNNGTC | 1 cut(s) | 2236 |
| PfoI | TCCNGGA | 1 cut(s) | 1767 |
| PkrI | GCNGC | 9 cut(s) | 18, 73, 498, 541, 742, 1575, 1710, 1845, 2350 |
| PleI | GAGTC | 3 cut(s) | 1225, 1300, 2227 |
| PmaCI | CACGTG | 1 cut(s) | 260 |
| PmlI | CACGTG | 1 cut(s) | 260 |
| PpsI | GAGTC | 3 cut(s) | 1225, 1300, 2227 |
| Ppu21I | YACGTR | 1 cut(s) | 260 |
| PsiI | TTATAA | 1 cut(s) | 2426 |
| Psp124BI | GAGCTC | 2 cut(s) | 1117, 1422 |
| Psp6I | CCWGG | 3 cut(s) | 409, 469, 2397 |
| PspCI | CACGTG | 1 cut(s) | 260 |
| PspEI | GGTNACC | 1 cut(s) | 2096 |
| PspFI | CCCAGC | 2 cut(s) | 542, 1090 |
| PspGI | CCWGG | 3 cut(s) | 409, 469, 2397 |
| PspN4I | GGNNCC | 4 cut(s) | 605, 663, 699, 2358 |
| PspPI | GGNCC | 1 cut(s) | 2162 |
| PstI | CTGCAG | 2 cut(s) | 455, 529 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1534, 1714 |
| PsuI | RGATCY | 9 cut(s) | 209, 447, 781, 1075, 1321, 1354, 2177, 2356, 2469 |
| PsyI | GACNNNGTC | 1 cut(s) | 2236 |
| RsaI | GTAC | 5 cut(s) | 199, 734, 811, 1754, 2366 |
| RsaNI | GTAC | 5 cut(s) | 198, 733, 810, 1753, 2365 |
| RseI | CAYNNNNRTG | 1 cut(s) | 980 |
| SacI | GAGCTC | 2 cut(s) | 1117, 1422 |
| SapI | GCTCTTC | 1 cut(s) | 383 |
| SatI | GCNGC | 9 cut(s) | 17, 72, 497, 540, 741, 1574, 1709, 1844, 2349 |
| Sau96I | GGNCC | 1 cut(s) | 2162 |
| ScaI | AGTACT | 1 cut(s) | 1754 |
| SchI | GAGTC | 3 cut(s) | 1225, 1300, 2227 |
| ScrFI | CCNGG | 5 cut(s) | 411, 471, 1769, 2221, 2399 |
| SduI | GDGCHC | 3 cut(s) | 1117, 1286, 1422 |
| SfaNI | GCATC | 9 cut(s) | 288, 837, 1093, 1531, 1552, 1783, 1841, 1951, 2335 |
| SfcI | CTRYAG | 2 cut(s) | 451, 525 |
| Sfr274I | CTCGAG | 1 cut(s) | 1421 |
| SinI | GGWCC | 1 cut(s) | 2162 |
| SlaI | CTCGAG | 1 cut(s) | 1421 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 980 |
| SmlI | CTYRAG | 5 cut(s) | 965, 1142, 1330, 1421, 1445 |
| SmoI | CTYRAG | 5 cut(s) | 965, 1142, 1330, 1421, 1445 |
| SsiI | CCGC | 2 cut(s) | 1453, 1487 |
| SspMI | CTAG | 6 cut(s) | 651, 821, 1254, 1545, 1703, 2049 |
| SstI | GAGCTC | 2 cut(s) | 1117, 1422 |
| StyD4I | CCNGG | 5 cut(s) | 409, 469, 1767, 2219, 2397 |
| StyI | CCWWGG | 3 cut(s) | 234, 665, 2092 |
| TaaI | ACNGT | 4 cut(s) | 769, 1604, 1872, 2272 |
| TaiI | ACGT | 7 cut(s) | 172, 207, 262, 537, 638, 1808, 1930 |
| TaqI | TCGA | 5 cut(s) | 778, 1390, 1422, 2059, 2334 |
| TatI | WGTACW | 3 cut(s) | 732, 1752, 2364 |
| TfiI | GAWTC | 2 cut(s) | 916, 2018 |
| TscAI | CASTG | 4 cut(s) | 534, 621, 742, 1291 |
| TseFI | GTSAC | 4 cut(s) | 77, 255, 655, 2096 |
| TseI | GCWGC | 9 cut(s) | 16, 71, 496, 539, 740, 1573, 1708, 1843, 2348 |
| Tsp45I | GTSAC | 4 cut(s) | 77, 255, 655, 2096 |
| TspRI | CASTG | 4 cut(s) | 534, 621, 742, 1291 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2236 |
| Vha464I | CTTAAG | 2 cut(s) | 1142, 1445 |
| VpaK11BI | GGWCC | 1 cut(s) | 2162 |
| XapI | RAATTY | 6 cut(s) | 130, 433, 685, 719, 1043, 1912 |
| XbaI | TCTAGA | 1 cut(s) | 820 |
| XceI | RCATGY | 1 cut(s) | 1380 |
| XhoI | CTCGAG | 1 cut(s) | 1421 |
| XmnI | GAANNNNTTC | 2 cut(s) | 117, 1585 |
| XspI | CTAG | 6 cut(s) | 651, 821, 1254, 1545, 1703, 2049 |
| ZrmI | AGTACT | 1 cut(s) | 1754 |