Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC_tran | PF00005 | 1 - 28 | 1.6e-06 | ABC transporter |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 222 |
| AccIII | TCCGGA | 1 cut(s) | 239 |
| AciI | CCGC | 1 cut(s) | 222 |
| AclWI | GGATC | 3 cut(s) | 295, 308, 371 |
| AcsI | RAATTY | 4 cut(s) | 182, 204, 267, 393 |
| AgsI | TTSAA | 1 cut(s) | 294 |
| AluBI | AGCT | 4 cut(s) | 31, 41, 332, 340 |
| AluI | AGCT | 4 cut(s) | 31, 41, 332, 340 |
| AlwI | GGATC | 3 cut(s) | 295, 308, 371 |
| Ama87I | CYCGRG | 1 cut(s) | 36 |
| Aor13HI | TCCGGA | 1 cut(s) | 239 |
| ApeKI | GCWGC | 2 cut(s) | 107, 430 |
| ApoI | RAATTY | 4 cut(s) | 182, 204, 267, 393 |
| AvaI | CYCGRG | 1 cut(s) | 36 |
| AxyI | CCTNAGG | 1 cut(s) | 359 |
| BamHI | GGATCC | 1 cut(s) | 300 |
| BbsI | GAAGAC | 1 cut(s) | 158 |
| BbvI | GCAGC | 1 cut(s) | 119 |
| BfaI | CTAG | 2 cut(s) | 71, 143 |
| BfmI | CTRYAG | 2 cut(s) | 46, 105 |
| BisI | GCNGC | 2 cut(s) | 108, 431 |
| BlsI | GCNGC | 2 cut(s) | 109, 432 |
| BmeT110I | CYCGRG | 1 cut(s) | 36 |
| BmiI | GGNNCC | 2 cut(s) | 302, 422 |
| BmsI | GCATC | 3 cut(s) | 43, 85, 127 |
| BpiI | GAAGAC | 1 cut(s) | 158 |
| Bsa29I | ATCGAT | 1 cut(s) | 249 |
| BsaWI | WCCGGW | 1 cut(s) | 239 |
| Bse21I | CCTNAGG | 1 cut(s) | 359 |
| BseAI | TCCGGA | 1 cut(s) | 239 |
| BseCI | ATCGAT | 1 cut(s) | 249 |
| BseGI | GGATG | 2 cut(s) | 142, 282 |
| BseXI | GCAGC | 1 cut(s) | 119 |
| BsgI | GTGCAG | 1 cut(s) | 108 |
| BshVI | ATCGAT | 1 cut(s) | 249 |
| BsiHKCI | CYCGRG | 1 cut(s) | 36 |
| BsiSI | CCGG | 1 cut(s) | 240 |
| BslFI | GGGAC | 1 cut(s) | 418 |
| BsmFI | GGGAC | 1 cut(s) | 418 |
| BsoBI | CYCGRG | 1 cut(s) | 36 |
| Bsp13I | TCCGGA | 1 cut(s) | 239 |
| Bsp143I | GATC | 2 cut(s) | 300, 363 |
| BspACI | CCGC | 1 cut(s) | 222 |
| BspDI | ATCGAT | 1 cut(s) | 249 |
| BspEI | TCCGGA | 1 cut(s) | 239 |
| BspHI | TCATGA | 1 cut(s) | 121 |
| BspLI | GGNNCC | 2 cut(s) | 302, 422 |
| BspMAI | CTGCAG | 1 cut(s) | 109 |
| BspPI | GGATC | 3 cut(s) | 295, 308, 371 |
| BsrBI | CCGCTC | 1 cut(s) | 222 |
| BssMI | GATC | 2 cut(s) | 300, 363 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 95, 104 |
| BstC8I | GCNNGC | 1 cut(s) | 33 |
| BstDEI | CTNAG | 1 cut(s) | 359 |
| BstF5I | GGATG | 2 cut(s) | 142, 282 |
| BstKTI | GATC | 2 cut(s) | 303, 366 |
| BstMBI | GATC | 2 cut(s) | 300, 363 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 95, 104 |
| BstSFI | CTRYAG | 2 cut(s) | 46, 105 |
| BstV1I | GCAGC | 1 cut(s) | 119 |
| BstV2I | GAAGAC | 1 cut(s) | 158 |
| BstX2I | RGATCY | 1 cut(s) | 300 |
| BstYI | RGATCY | 1 cut(s) | 300 |
| Bsu15I | ATCGAT | 1 cut(s) | 249 |
| Bsu36I | CCTNAGG | 1 cut(s) | 359 |
| BsuTUI | ATCGAT | 1 cut(s) | 249 |
| BtsCI | GGATG | 2 cut(s) | 142, 282 |
| BtsI | GCAGTG | 1 cut(s) | 102 |
| BtsIMutI | CAGTG | 2 cut(s) | 91, 102 |
| Cac8I | GCNNGC | 1 cut(s) | 33 |
| CciI | TCATGA | 1 cut(s) | 121 |
| ClaI | ATCGAT | 1 cut(s) | 249 |
| CviAII | CATG | 3 cut(s) | 122, 133, 379 |
| CviJI | RGCY | 6 cut(s) | 31, 35, 41, 332, 340, 433 |
| CviKI_1 | RGCY | 6 cut(s) | 31, 35, 41, 332, 340, 433 |
| DdeI | CTNAG | 1 cut(s) | 359 |
| DpnI | GATC | 2 cut(s) | 302, 365 |
| DpnII | GATC | 2 cut(s) | 300, 363 |
| Eco32I | GATATC | 1 cut(s) | 61 |
| Eco81I | CCTNAGG | 1 cut(s) | 359 |
| Eco88I | CYCGRG | 1 cut(s) | 36 |
| EcoRV | GATATC | 1 cut(s) | 61 |
| FaeI | CATG | 3 cut(s) | 125, 136, 382 |
| FaiI | YATR | 8 cut(s) | 48, 123, 134, 258, 376, 380, 399, 409 |
| FaqI | GGGAC | 1 cut(s) | 418 |
| FatI | CATG | 3 cut(s) | 121, 132, 378 |
| Fnu4HI | GCNGC | 2 cut(s) | 108, 431 |
| FokI | GGATG | 2 cut(s) | 149, 289 |
| Fsp4HI | GCNGC | 2 cut(s) | 108, 431 |
| FspBI | CTAG | 2 cut(s) | 71, 143 |
| GluI | GCNGC | 2 cut(s) | 108, 431 |
| HapII | CCGG | 1 cut(s) | 240 |
| Hin1II | CATG | 3 cut(s) | 125, 136, 382 |
| HincII | GTYRAC | 1 cut(s) | 199 |
| HindII | GTYRAC | 1 cut(s) | 199 |
| HindIII | AAGCTT | 1 cut(s) | 338 |
| HinfI | GANTC | 4 cut(s) | 25, 160, 169, 243 |
| HpaII | CCGG | 1 cut(s) | 240 |
| Hpy166II | GTNNAC | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| Hpy188III | TCNNGA | 3 cut(s) | 122, 240, 304 |
| Hpy8I | GTNNAC | 1 cut(s) | 199 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 4 cut(s) | 89, 98, 107, 347 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 95, 104 |
| HpyF3I | CTNAG | 1 cut(s) | 359 |
| Hsp92II | CATG | 3 cut(s) | 125, 136, 382 |
| Kpn2I | TCCGGA | 1 cut(s) | 239 |
| Kzo9I | GATC | 2 cut(s) | 300, 363 |
| LpnPI | CCDG | 4 cut(s) | 17, 194, 253, 317 |
| Lsp1109I | GCAGC | 1 cut(s) | 119 |
| LweI | GCATC | 3 cut(s) | 43, 85, 127 |
| MaeI | CTAG | 2 cut(s) | 71, 143 |
| MaeIII | GTNAC | 2 cut(s) | 166, 229 |
| MalI | GATC | 2 cut(s) | 302, 365 |
| MbiI | CCGCTC | 1 cut(s) | 222 |
| MboI | GATC | 2 cut(s) | 300, 363 |
| MboII | GAAGA | 1 cut(s) | 163 |
| MflI | RGATCY | 1 cut(s) | 300 |
| MluCI | AATT | 5 cut(s) | 111, 182, 204, 267, 393 |
| MlyI | GAGTC | 1 cut(s) | 163 |
| MnlI | CCTC | 2 cut(s) | 77, 394 |
| MroI | TCCGGA | 1 cut(s) | 239 |
| MseI | TTAA | 1 cut(s) | 387 |
| MslI | CAYNNNNRTG | 1 cut(s) | 126 |
| MspA1I | CMGCKG | 1 cut(s) | 31 |
| MspI | CCGG | 1 cut(s) | 240 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 95, 104 |
| NdeII | GATC | 2 cut(s) | 300, 363 |
| NlaIII | CATG | 3 cut(s) | 125, 136, 382 |
| NlaIV | GGNNCC | 2 cut(s) | 302, 422 |
| NmuCI | GTSAC | 1 cut(s) | 166 |
| PaeR7I | CTCGAG | 1 cut(s) | 36 |
| PagI | TCATGA | 1 cut(s) | 121 |
| PfeI | GAWTC | 3 cut(s) | 25, 160, 243 |
| PkrI | GCNGC | 2 cut(s) | 109, 432 |
| PleI | GAGTC | 1 cut(s) | 163 |
| PpsI | GAGTC | 1 cut(s) | 163 |
| PspN4I | GGNNCC | 2 cut(s) | 302, 422 |
| PspXI | VCTCGAGB | 1 cut(s) | 36 |
| PstI | CTGCAG | 1 cut(s) | 109 |
| PsuI | RGATCY | 1 cut(s) | 300 |
| PvuII | CAGCTG | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 1 cut(s) | 126 |
| SaqAI | TTAA | 1 cut(s) | 387 |
| SatI | GCNGC | 2 cut(s) | 108, 431 |
| Sau3AI | GATC | 2 cut(s) | 300, 363 |
| SchI | GAGTC | 1 cut(s) | 163 |
| SetI | ASST | 5 cut(s) | 33, 43, 69, 334, 342 |
| SfaNI | GCATC | 3 cut(s) | 43, 85, 127 |
| SfcI | CTRYAG | 2 cut(s) | 46, 105 |
| Sfr274I | CTCGAG | 1 cut(s) | 36 |
| SlaI | CTCGAG | 1 cut(s) | 36 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 126 |
| SmlI | CTYRAG | 1 cut(s) | 36 |
| SmoI | CTYRAG | 1 cut(s) | 36 |
| Sse9I | AATT | 5 cut(s) | 111, 182, 204, 267, 393 |
| SsiI | CCGC | 1 cut(s) | 222 |
| SspMI | CTAG | 2 cut(s) | 71, 143 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaqI | TCGA | 2 cut(s) | 37, 249 |
| TasI | AATT | 5 cut(s) | 111, 182, 204, 267, 393 |
| TfiI | GAWTC | 3 cut(s) | 25, 160, 243 |
| Tru1I | TTAA | 1 cut(s) | 387 |
| Tru9I | TTAA | 1 cut(s) | 387 |
| TscAI | CASTG | 2 cut(s) | 91, 109 |
| TseFI | GTSAC | 1 cut(s) | 166 |
| TseI | GCWGC | 2 cut(s) | 107, 430 |
| Tsp45I | GTSAC | 1 cut(s) | 166 |
| TspDTI | ATGAA | 3 cut(s) | 110, 293, 342 |
| TspRI | CASTG | 2 cut(s) | 91, 109 |
| XapI | RAATTY | 4 cut(s) | 182, 204, 267, 393 |
| XhoI | CTCGAG | 1 cut(s) | 36 |
| XspI | CTAG | 2 cut(s) | 71, 143 |