Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000524

Physical Location & Seq

Genomic Coordinates Reverse (-)

44667692 .. 44670773

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0355800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGACAATGTTAACCTTTTGACAAGTACAGATGCAGATGGTGGACTGCTGGCTTCTCCTCCTATTAGATTTAACAAAGAAGAAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAACTTCTAGCAAATTCAGATGGAATTAGGTTACTGAGAACAGTGGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGTCTCAGCAGTAGGAACATTTGGATTGTCTAACATTACTGTTGGAACAGGCATTGGAGATCGAGCAGCTCCAATGCCAGGCATGGTTGGACTGTCTAAACTCTGCATGCGGTCCCAGCGCTGCCTCACCTTCCCTGTCATAGTGTCATATTCCAACGAGCCATTAAAAAAACCAGTATTTGCAGGAAATATAAGGAAAAAGAGCAACGATAGCAGCAGCAACACATGCATTATGGAAAAGGAAACCACTATATTGAAGGCTGAAGAGCTCAATAAGAAGCATCAACAAATCCCTGGCAGCAGACAAGTTCTAGAACTTTTGAAAGCTACTTCAGACCCATCTGCCAATGTTCTCGACATCGTGCTTTACTTTTCAAGGCGTAACGGAGAGATTAGGTGTATTTCAGCAGAGATAAAATTGCACCACCAGCGGCAAGAGGAGGACAAAGTACTAGATGAAGAAATTGAAGAGGATGAGATGTTCTGGAATCAAGAAGCTCTTAAAGAGTTCCTAAGCTGGATTGAGCGATGCTGTGATTTGGTGTTGAAGCATCTTTCAGTCATGCAGAAACAAAGGTATGTTGCTACTCTCTTAATACACTATTTGTCTGTCTCTCTAAATGTACTAATACATATTATGACTTTTCCAGATGCTGATGAAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

289

Amino Acids

32.11

Weight (kDa)

6.11

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660 AT1G07820 AT1G07820 AT2G28740 AT3G45930 AT3G46320 AT3G53730 AT5G59690 AT5G59970 AT5G59970
malus_domestica	MD03G1097000.v1.1 MD03G1105400.v1.1 MD04G1124800.v1.1 MD06G1122500.v1.1 MD07G1184400.v1.1 MD07G1194500.v1.1 MD11G1143500.v1.1 MD12G1139800.v1.1 MD14G1139400.v1.1 MD15G1139200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0364991 RchiOBHm_Chr3g0467051 RchiOBHm_Chr5g0062221 RchiOBHm_Chr5g0063251 RchiOBHm_Chr5g0063281 RchiOBHm_Chr5g0063731 RchiOBHm_Chr7g0187711
rosa_laevigata	RLG00000024533
rosa_multiflora	Rmu_sc0004483.1_g000025 Rmu_sc0005045.1_g000017 Rmu_sc0005045.1_g000024 Rmu_sc0005638.1_g000003 Rmu_sc0042820.1_g000002 Rmu_sc0042820.1_g000003 Rmu_ssc0000112.1_g000021 Rmu_ssc0000309.1_g000047 Rmu_ssc0000409.1_g000022
rosa_roxburghii	Rroxscaffold_1G00017140 Rroxscaffold_1G00017150 Rroxscaffold_1G00017430 Rroxscaffold_1G00017460 Rroxscaffold_4G00292020 Rroxscaffold_6G00413990
rosa_rugosa	Rorug01G0318800 Rorug01G0329200 Rorug03G0085000 Rorug05G0347300 Rorug05G0355600 Rorug05G0355800 Rorug05G0358800 Rorug05G0358800 Rorug05G0358900 Rorug06G0483800
rosa_samantha	Rh1AG327700 Rh1BG289000 Rh1CG305700 Rh1DG320500 Rh3AG133000 Rh3BG154000 Rh3CG154000 Rh3DG155100 Rh5AG407800 Rh5AG417800 Rh5BG421500 Rh5BG430300 Rh5BG433000 Rh5BG433200 Rh5CG445700 Rh5CG456200 Rh5CG456400 Rh5DG436500 Rh5DG443700 Rh5DG443900 Rh5DG446400 Rh5DG446600 Rh7BG090600 Rh7CG089600 Rh7DG091100
rosa_wichuraiana	Rw1G029050 Rw3G012590 Rw5G038430 Rw5G039030 Rw5G039230 Rw5G039250 Rw7G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	310, 631
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	2 cut(s)	483, 516
AfaI	GTAC	3 cut(s)	28, 651, 825
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	457, 523, 576, 668, 748
AjnI	CCWGG	2 cut(s)	277, 493
AloI	GAACNNNNNNTCC	2 cut(s)	665, 697
AluBI	AGCT	7 cut(s)	95, 179, 269, 469, 527, 698, 717
AluI	AGCT	7 cut(s)	95, 179, 269, 469, 527, 698, 717
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	3 cut(s)	103, 208, 817
AlwNI	CAGNNNCTG	1 cut(s)	854
Aor51HI	AGCGCT	1 cut(s)	320
ApeKI	GCWGC	6 cut(s)	179, 266, 321, 414, 417, 498
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	6 cut(s)	166, 278, 308, 426, 429, 510
BccI	CCATC	3 cut(s)	32, 134, 547
BciT130I	CCWGG	2 cut(s)	279, 495
BcoDI	GTCTC	3 cut(s)	103, 208, 817
BfaI	CTAG	3 cut(s)	128, 512, 653
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	7 cut(s)	180, 267, 322, 415, 418, 499, 632
BlsI	GCNGC	7 cut(s)	181, 268, 323, 416, 419, 500, 633
BmcAI	AGTACT	1 cut(s)	651
Bme1390I	CCNGG	2 cut(s)	279, 495
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	2 cut(s)	279, 495
BmsI	GCATC	6 cut(s)	22, 157, 490, 719, 760, 841
Bpu10I	CCTNAGC	1 cut(s)	713
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	279, 495
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	2 cut(s)	172, 679
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	146, 219
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	48, 653
BseXI	GCAGC	6 cut(s)	166, 278, 308, 426, 429, 510
BseYI	CCCAGC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	3 cut(s)	103, 208, 817
BsmFI	GGGAC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	2 cut(s)	310, 631
BspCNI	CTCAG	2 cut(s)	147, 218
BspLI	GGNNCC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	459
BspTNI	GGTCTC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	279, 495
Bst4CI	ACNGT	4 cut(s)	90, 163, 241, 294
Bst6I	CTCTTC	2 cut(s)	459, 663
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	51, 308
BstDEI	CTNAG	3 cut(s)	155, 205, 713
BstF5I	GGATG	2 cut(s)	172, 679
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	3 cut(s)	103, 208, 817
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 188, 316, 411, 426, 628
BstNI	CCWGG	2 cut(s)	279, 495
BstNSI	RCATGY	2 cut(s)	310, 429
BstSCI	CCNGG	2 cut(s)	277, 493
BstV1I	GCAGC	6 cut(s)	166, 278, 308, 426, 429, 510
BtgZI	GCGATG	1 cut(s)	742
BtsCI	GGATG	2 cut(s)	172, 679
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	51, 308
CaiI	CAGNNNCTG	1 cut(s)	854
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	27, 650, 824
CviAII	CATG	4 cut(s)	283, 307, 426, 763
CviQI	GTAC	3 cut(s)	27, 650, 824
DdeI	CTNAG	3 cut(s)	155, 205, 713
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	459, 663
EarI	CTCTTC	2 cut(s)	459, 663
Ecl136II	GAGCTC	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	312
Eco47III	AGCGCT	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	469
Eco57I	CTGAAG	2 cut(s)	483, 516
EcoICRI	GAGCTC	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	277, 493
EcoT22I	ATGCAT	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	471
FaeI	CATG	4 cut(s)	286, 310, 429, 766
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	4 cut(s)	282, 306, 425, 762
Fnu4HI	GCNGC	7 cut(s)	180, 267, 322, 415, 418, 499, 632
FokI	GGATG	2 cut(s)	179, 686
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	7 cut(s)	180, 267, 322, 415, 418, 499, 632
FspBI	CTAG	3 cut(s)	128, 512, 653
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	7 cut(s)	180, 267, 322, 415, 418, 499, 632
GsaI	CCCAGC	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	322
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	286, 310, 429, 766
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	688
HpaI	GTTAAC	1 cut(s)	13
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	13, 44
Hpy188I	TCNGA	2 cut(s)	139, 535
Hpy188III	TCNNGA	6 cut(s)	174, 512, 554, 685, 692, 848
Hpy8I	GTNNAC	2 cut(s)	13, 44
HpyAV	CCTTC	3 cut(s)	193, 340, 451
HpyCH4III	ACNGT	4 cut(s)	90, 163, 241, 294
HpyCH4V	TGCA	6 cut(s)	35, 306, 383, 429, 622, 766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 188, 316, 411, 426, 628
HpyF3I	CTNAG	3 cut(s)	155, 205, 713
Hsp92II	CATG	4 cut(s)	286, 310, 429, 766
HspAI	GCGC	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	259
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	6 cut(s)	166, 278, 308, 426, 429, 510
LweI	GCATC	6 cut(s)	22, 157, 490, 719, 760, 841
MaeI	CTAG	3 cut(s)	128, 512, 653
MaeIII	GTNAC	2 cut(s)	150, 581
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	4 cut(s)	92, 476, 671, 680
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	4 cut(s)	133, 144, 617, 663
MmeI	TCCRAC	3 cut(s)	223, 268, 378
MnlI	CCTC	5 cut(s)	69, 335, 631, 634, 664
Mph1103I	ATGCAT	1 cut(s)	431
MseI	TTAA	6 cut(s)	12, 72, 120, 365, 702, 794
MspA1I	CMGCKG	1 cut(s)	631
MspR9I	CCNGG	2 cut(s)	279, 495
MvaI	CCWGG	2 cut(s)	279, 495
MwoI	GCNNNNNNNGC	6 cut(s)	176, 188, 316, 411, 426, 628
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	4 cut(s)	286, 310, 429, 766
NlaIV	GGNNCC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	431
NspI	RCATGY	2 cut(s)	310, 429
PaeI	GCATGC	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	688
PkrI	GCNGC	7 cut(s)	181, 268, 323, 416, 419, 500, 633
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	277, 493
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	2 cut(s)	277, 493
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	854
RsaI	GTAC	3 cut(s)	28, 651, 825
RsaNI	GTAC	3 cut(s)	27, 650, 824
SacI	GAGCTC	1 cut(s)	471
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	6 cut(s)	12, 72, 120, 365, 702, 794
SatI	GCNGC	7 cut(s)	180, 267, 322, 415, 418, 499, 632
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	312
ScaI	AGTACT	1 cut(s)	651
ScrFI	CCNGG	2 cut(s)	279, 495
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	6 cut(s)	22, 157, 490, 719, 760, 841
SinI	GGWCC	1 cut(s)	312
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	4 cut(s)	133, 144, 617, 663
SsiI	CCGC	2 cut(s)	310, 631
SspMI	CTAG	3 cut(s)	128, 512, 653
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	277, 493
TaaI	ACNGT	4 cut(s)	90, 163, 241, 294
TaqI	TCGA	2 cut(s)	262, 555
TasI	AATT	4 cut(s)	133, 144, 617, 663
TatI	WGTACW	3 cut(s)	26, 649, 823
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	1 cut(s)	688
Tru1I	TTAA	6 cut(s)	12, 72, 120, 365, 702, 794
Tru9I	TTAA	6 cut(s)	12, 72, 120, 365, 702, 794
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	6 cut(s)	179, 266, 321, 414, 417, 498
TspDTI	ATGAA	1 cut(s)	672
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	312
XapI	RAATTY	1 cut(s)	133
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	2 cut(s)	310, 429
XspI	CTAG	3 cut(s)	128, 512, 653
ZrmI	AGTACT	1 cut(s)	651
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.