Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000418.1

Orthogroup ID

OG0006019

Physical Location & Seq

Genomic Coordinates Forward (+)

63670 .. 67016

Gene Structure 3347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000418.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgagattgcttttctatcttgcagacataattttgaaggaaagcattgcaggcggcattcgaaccacagaggtagtcacgcttgaagcttcgacatgtcttctgggattgctctggtttattccatcctttgtggcatctggacttcttcattcatggtgggtaaaccgagcattctgcagacttgtggctggaggtaggcacccttttatagagaggtggccactttactttcaagagcagcattttgatgataactttgatgcaggtggagccgaccgtacttgtcgtgaactggcagccaccaagcattcacctgacatactcatttttgccacccatatgcaggacgcaccgcgatacaggcatcaaaaacaaaaagaaagagcctatgtggtgagcaattccaagtcctttctgaactttaagtctttggttcttgttagctgcaaaggcttaaccactgatggcctcactgctattgctgccaattgtagatgtattgtgtatgttgatatgtatagcttgtatgtgtctgatgcttatgttgtgattggaaataagttattttgtatgtttgcttttcacaatcatgatgctagtaatttggataaacatgtgataaatggtccagatgattgtccttttgacatgaaattgcctgttgctgcagagacatctcaccctgttggaaagccttattgtttgacagagttgcctgggcagctttcttgttcaacagagttgactgtgactcgggatgtgataaaccattcaggatactctaatggaaagctgcctcacaaaacttgtcaaaggaatgagaaagttgctatatccctgggccatgatagtaaggtaaacaacatgcgaactaaagatgacaatgttgatagggagaaaggctgcatactagtaatgctttcttatatgtttgtttcagtttcatgtagagatccatatgaaaaaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.49

Weight (kDa)

7.56

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13590 AT5G13590 AT5G13590 AT5G13590 AT5G13590 AT5G13590
fragaria_vesca	FvH4_7g20760
malus_domestica	MD01G1117200.v1.1 MD07G1184600.v1.1
prunus_persica	Prupe.2G224500_v2.0.a1
pyrus_communis	pycom01g14480 pycom07g17670
rosa_chinensis	RchiOBHm_Chr1g0365001
rosa_laevigata	RLG00000027451
rosa_multiflora	Rmu_sc0000418.1_g000009 Rmu_ssc0000112.1_g000020
rosa_roxburghii	Rroxscaffold_1G00022860 Rroxscaffold_2G00110440 Rroxscaffold_4G00291580 Rroxscaffold_4G00292010
rosa_rugosa	Rorug01G0318800 Rorug02G0315200
rosa_samantha	Rh1AG327800 Rh1BG289100 Rh1CG305800 Rh1DG320600
rosa_wichuraiana	Rw1G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	201
AccII	CGCG	1 cut(s)	358
AciI	CCGC	2 cut(s)	54, 356
AclWI	GGATC	1 cut(s)	950
AcoI	YGGCCR	1 cut(s)	221
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	346
AflIII	ACRYGT	2 cut(s)	95, 616
AgsI	TTSAA	4 cut(s)	37, 86, 236, 738
AhlI	ACTAGT	1 cut(s)	913
AjnI	CCWGG	2 cut(s)	718, 840
AluBI	AGCT	5 cut(s)	89, 447, 525, 727, 796
AluI	AGCT	5 cut(s)	89, 447, 525, 727, 796
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	950
Ama87I	CYCGRG	1 cut(s)	756
AoxI	GGCC	3 cut(s)	221, 469, 844
ApeKI	GCWGC	8 cut(s)	241, 299, 447, 485, 668, 724, 796, 906
AspS9I	GGNCC	2 cut(s)	629, 844
AsuHPI	GGTGA	3 cut(s)	306, 409, 674
AsuII	TTCGAA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	756
AvaII	GGWCC	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	8 cut(s)	253, 311, 434, 472, 655, 736, 783, 893
BccI	CCATC	2 cut(s)	133, 461
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciT130I	CCWGG	2 cut(s)	720, 842
BciVI	GTATCC	1 cut(s)	773
BcoDI	GTCTC	1 cut(s)	668
BcuI	ACTAGT	1 cut(s)	913
BfaI	CTAG	2 cut(s)	600, 914
BfmI	CTRYAG	2 cut(s)	178, 669
BfuAI	ACCTGC	1 cut(s)	257
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	9 cut(s)	55, 242, 300, 448, 486, 669, 725, 797, 907
BlsI	GCNGC	9 cut(s)	56, 243, 301, 449, 487, 670, 726, 798, 908
Bme1390I	CCNGG	2 cut(s)	720, 842
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	756
BmgT120I	GGNCC	2 cut(s)	629, 844
BmiI	GGNNCC	2 cut(s)	203, 274
BmrFI	CCNGG	2 cut(s)	720, 842
BmsI	GCATC	5 cut(s)	146, 253, 376, 529, 586
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	719, 840, 841
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	720, 842
BseDI	CCNNGG	3 cut(s)	719, 840, 841
BseGI	GGATG	2 cut(s)	125, 766
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	300
BseXI	GCAGC	8 cut(s)	253, 311, 434, 472, 655, 736, 783, 893
Bsh1236I	CGCG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	223, 471, 846
BshNI	GGYRCC	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	756
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	668
BsmI	GAATGC	3 cut(s)	57, 173, 310
BsnI	GGCC	3 cut(s)	223, 471, 846
BsoBI	CYCGRG	1 cut(s)	756
Bsp119I	TTCGAA	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	955
BspACI	CCGC	2 cut(s)	54, 356
BspANI	GGCC	3 cut(s)	223, 471, 846
BspFNI	CGCG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	203, 274
BspMAI	CTGCAG	2 cut(s)	182, 673
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	950
BspT104I	TTCGAA	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	719, 840, 841
BssMI	GATC	1 cut(s)	955
Bst2UI	CCWGG	2 cut(s)	720, 842
Bst4CI	ACNGT	2 cut(s)	281, 751
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	125, 766
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	1 cut(s)	958
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	1 cut(s)	955
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 272, 364, 453, 485, 724
BstNI	CCWGG	2 cut(s)	720, 842
BstNSI	RCATGY	3 cut(s)	99, 620, 871
BstSCI	CCNGG	2 cut(s)	718, 840
BstSFI	CTRYAG	2 cut(s)	178, 669
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	8 cut(s)	253, 311, 434, 472, 655, 736, 783, 893
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	955
BstYI	RGATCY	1 cut(s)	955
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	3 cut(s)	223, 471, 846
BtsCI	GGATG	2 cut(s)	125, 766
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	462, 474
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	52
CciI	TCATGA	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	629, 844
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	8 cut(s)	96, 156, 593, 617, 652, 848, 868, 948
CviQI	GTAC	1 cut(s)	282
DpnI	GATC	1 cut(s)	957
DpnII	GATC	1 cut(s)	955
EaeI	YGGCCR	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	756
EcoRII	CCWGG	2 cut(s)	718, 840
FaeI	CATG	8 cut(s)	99, 159, 596, 620, 655, 851, 871, 951
FatI	CATG	8 cut(s)	95, 155, 592, 616, 651, 847, 867, 947
FauNDI	CATATG	2 cut(s)	342, 961
Fnu4HI	GCNGC	9 cut(s)	55, 242, 300, 448, 486, 669, 725, 797, 907
FokI	GGATG	2 cut(s)	112, 773
Fsp4HI	GCNGC	9 cut(s)	55, 242, 300, 448, 486, 669, 725, 797, 907
FspBI	CTAG	2 cut(s)	600, 914
GluI	GCNGC	9 cut(s)	55, 242, 300, 448, 486, 669, 725, 797, 907
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	223, 471, 846
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	8 cut(s)	99, 159, 596, 620, 655, 851, 871, 951
HincII	GTYRAC	1 cut(s)	747
HindII	GTYRAC	1 cut(s)	747
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	1 cut(s)	754
HphI	GGTGA	3 cut(s)	306, 409, 674
Hpy166II	GTNNAC	4 cut(s)	166, 293, 747, 862
Hpy188I	TCNGA	2 cut(s)	420, 538
Hpy188III	TCNNGA	7 cut(s)	141, 236, 290, 593, 632, 758, 777
Hpy8I	GTNNAC	4 cut(s)	166, 293, 747, 862
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	281, 751
HpyCH4V	TGCA	8 cut(s)	23, 50, 180, 266, 346, 450, 671, 909
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 272, 364, 453, 485, 724
Hsp92II	CATG	8 cut(s)	99, 159, 596, 620, 655, 851, 871, 951
Kzo9I	GATC	1 cut(s)	955
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	8 cut(s)	253, 311, 434, 472, 655, 736, 783, 893
LweI	GCATC	5 cut(s)	146, 253, 376, 529, 586
MaeI	CTAG	2 cut(s)	600, 914
MaeIII	GTNAC	2 cut(s)	76, 751
MalI	GATC	1 cut(s)	957
MboI	GATC	1 cut(s)	955
MboII	GAAGA	2 cut(s)	92, 140
MfeI	CAATTG	1 cut(s)	490
MflI	RGATCY	1 cut(s)	955
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	5 cut(s)	30, 403, 490, 604, 656
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	748
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	5 cut(s)	64, 188, 210, 482, 810
Mox20I	TGGCCA	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	2 cut(s)	426, 458
MslI	CAYNNNNRTG	3 cut(s)	249, 341, 591
Msp20I	TGGCCA	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	720, 842
MunI	CAATTG	1 cut(s)	490
Mva1269I	GAATGC	3 cut(s)	57, 173, 310
MvaI	CCWGG	2 cut(s)	720, 842
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	6 cut(s)	51, 272, 364, 453, 485, 724
NdeI	CATATG	2 cut(s)	342, 961
NdeII	GATC	1 cut(s)	955
NlaIII	CATG	8 cut(s)	99, 159, 596, 620, 655, 851, 871, 951
NlaIV	GGNNCC	2 cut(s)	203, 274
NmuCI	GTSAC	2 cut(s)	76, 751
NspI	RCATGY	3 cut(s)	99, 620, 871
NspV	TTCGAA	1 cut(s)	61
PagI	TCATGA	1 cut(s)	592
PaqCI	CACCTGC	1 cut(s)	257
PasI	CCCWGGG	1 cut(s)	841
PciI	ACATGT	2 cut(s)	95, 616
PctI	GAATGC	3 cut(s)	57, 173, 310
PkrI	GCNGC	9 cut(s)	56, 243, 301, 449, 487, 670, 726, 798, 908
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
PscI	ACATGT	2 cut(s)	95, 616
Psp6I	CCWGG	2 cut(s)	718, 840
PspGI	CCWGG	2 cut(s)	718, 840
PspN4I	GGNNCC	2 cut(s)	203, 274
PspPI	GGNCC	2 cut(s)	629, 844
PstI	CTGCAG	2 cut(s)	182, 673
PsuI	RGATCY	1 cut(s)	955
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	3 cut(s)	249, 341, 591
SaqAI	TTAA	2 cut(s)	426, 458
SatI	GCNGC	9 cut(s)	55, 242, 300, 448, 486, 669, 725, 797, 907
Sau3AI	GATC	1 cut(s)	955
Sau96I	GGNCC	2 cut(s)	629, 844
SchI	GAGTC	1 cut(s)	748
ScrFI	CCNGG	2 cut(s)	720, 842
SfaNI	GCATC	5 cut(s)	146, 253, 376, 529, 586
SfcI	CTRYAG	2 cut(s)	178, 669
SfuI	TTCGAA	1 cut(s)	61
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	3 cut(s)	249, 341, 591
SpeI	ACTAGT	1 cut(s)	913
Sse9I	AATT	5 cut(s)	30, 403, 490, 604, 656
SsiI	CCGC	2 cut(s)	54, 356
SspMI	CTAG	2 cut(s)	600, 914
StyD4I	CCNGG	2 cut(s)	718, 840
TaaI	ACNGT	2 cut(s)	281, 751
TaqI	TCGA	2 cut(s)	61, 92
TasI	AATT	5 cut(s)	30, 403, 490, 604, 656
TauI	GCSGC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	426, 458
Tru9I	TTAA	2 cut(s)	426, 458
TscAI	CASTG	2 cut(s)	469, 481
TseFI	GTSAC	2 cut(s)	76, 751
TseI	GCWGC	8 cut(s)	241, 299, 447, 485, 668, 724, 796, 906
Tsp45I	GTSAC	2 cut(s)	76, 751
TspDTI	ATGAA	4 cut(s)	140, 144, 668, 936
TspRI	CASTG	2 cut(s)	469, 481
VpaK11BI	GGWCC	1 cut(s)	629
XceI	RCATGY	3 cut(s)	99, 620, 871
XspI	CTAG	2 cut(s)	600, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.