pycom07g18270

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003732
Physical Location & Seq
Reverse (-)
20756881 .. 20766356
9476 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 5322 bp
ATGGACTCAACAATGGAGGACGCAACGGCCGCCACGCCAACGGTGTCGTCGGAGCTGCCGCCGCCGCCGCCTCCTCCCAACGCGAACCCTAACACGGAGCTCCCTTCTTCCGATCCTCCCAAAACCAGAGAAGAGGGCGAGCTGTCTTCCGACGACGACGATGACGACAATACTATTTGCTCTGCTCCACATTCCACGGGTATCAGCGTGCCTCCTTCAGGGGCTGTGCCTGTTCAACCATTGAACAAACTGACTCAAGGCATTCAAGTTGGGAAGGTTGTATGTGGAAATGATCCCGCAAGCCCTGCTGATATTCAAACCCAAATATCCGTACAGTCTACATCCCAGAAGAGCAATGATACAAACCGAATACCATTAAAATCTGCCACACCTGGATGGGGTGCCCCTATGGGGTCCAACGATAATCTTGTTATAAACTTCTCAGACGATGATAGTCGCAGTGATTCTGAAGAAACAGAGCACAGGAAAGAAAAAGCTAGAGAAACTAAAAGTCATGTGACTGGAGTGGTTTTTAATGGAAAACCACCTACTTCATCACTTGCAAGATCAAACAAGTTACAACAGACAGCCAGGAATGCGGACAAAGTAATGCCTAAAAAATTGGGTATGAATCGCACTTTTATCTCATCGATGTCCAAAATCCGCGGAGCAAATTTTCGGGATTCTGGTCCTTCATCAGTTAATCAAGGATCTCGAGTTAGAAATTATGATTCCATGAACAAAAATTTAGTGAGCCAAGAGCGTGGACGTGATCAAGGTGTGGGCTTGAACAATAGTAAACTTCAGGACTTGCGGCATCAGATACGTGATCAAGGTGTGGGCTTGAACACGAGTAAACTTCAGGACTTGCGGCATCAGATTGCACTCCGGGAAAGTGAACTAAAGCTCAAGTCTGCCCAGAGAACTAAAGAATCAATTACATGTAGGGACGATAATGCTGCGAGCCAACACAGAGATGGAGCTAGTAAATCCAGTGTGAGATATTCTGATGTTACACAGATAGAACCAAAAGAGCCAGATAAGAAACGCTTGAAAGTTGGTGGCCCTTTTTCCACCCAGTCAAGTGTTCAAGGCCCACAAGATGTACCTGTTGCAAAATCTATTTTATCATCAAAAGTCTCAGCAGCGGAGGACGATGGTCCAATGAACAGAGTTAAGGTTGATCATGGCCAGAAAGGAATTCCTGGTCCAACAGAGTTAAGCATCGTAGAATGGAAAAATCAAAATGATAAACATGTTGCTGCTACATCAGAAAATATATGTAATGGAGTGAAAGATGGTGCTGGCATCAATACTAAAGTCATCCAGTCCGATAGGAAGAGCAAGCTGGTGGATCCTTATGCTACACTAAACAAGGTGACATCACCAGAAAGTATGACTTGCAATAATTTGCCGAAGAACTCAGAGACTATGGAATTGAATCATACACATGGGGATGATCGCCGTCTAGAACCAGGTTCCTTCTTGAACAGATCAACCTCCGGAAAGAATATAATGAGAAGTTCTGACCATCAGGAAGTCACATCCAGTGACAAGAAGCTTGATCCCTCCTCCAAGATATGTCAGGCATTTCTAAACAATGCAAGCCTCTCGAACTGTTTTGGTAATGCAAAGGTTACAGGACGAGGAGACATAGAAATGCATTCCTTGTTTGAAATTGAGGAAACATTGGACAAGGATCTGGAGGAAGCACAAGAACATAGGCGAACGTGTGAAATTGAAGAAAGAAATGCTCTGAAAGCTTATCGTAAAGCACAGAGGGATGTTCTTGAGGCCAATGCTAGGTGTTCTGATCTATACCGCAAAAGAGAAGTATATTCTGCCAACTTGAGGTCGTTTATTTTGGACAATTCCAGTTTGCTATGGTCGTTAAGGCAGAATGACCAAGCTGGAATTGGGTTGGATCATGCTAATAACATGACTGGAAATGTGAATCTAATACCTACATCAAGCCATCAGATGCATCCTGAGCATAGTGGTTTTAACCCAGCAGCGTGTGATTCAGACATCCAATGTGTTAACAGTGCTCACAACACCTCATACAAGCATTTGAGTGGACAAAACATGGGGTCAGAACCATGCAGCGAACCAGATGCTAGTACATCAGAGCCATTGCCTCTTCTAGGCAAAAACGGTGCAGATGGAGTGTCCTCTCCCTCCAATGAACTGAATAATTCAGCAGATAATGATGATGAGAGATATTCATTTGAAAATGAATCTGTTCAACCTAAAGACATGGACCTTGGAGACAAGCAAAAGGACTTAGATCAGGAATCAAATAGAAAAATGTCCATTGATAACTCCCAGGATCCTGTGCTTCTTGAAAGAATGTTGAGGTCTAAACTATTTGCAAAGCTAGGTACAAAAACATTGTCAAAGAATAGTAGTTCTTGTAATGGCACAGAACTTTCAGTGGAAGAAGGGGCTGAAAATGATTTCAGAACGGAAAAACCCAAAGAAATTAAAGGGACTTTTTCTTTCTCTGAAGTGGAAAAGAATCAACAATCTGATGATGAAGGTATGGATGGGCTCGAAAAAAATTCCTCTGAGCCTCCTCTTGAGATTCAAAGAGAGCACTCCGTCGAAAATCTTTCTGCGAACTCTCACTCCAATTTATATTCTGAGGACAGGTTTTACTTCAGAGGTAACATCTTAAGGACTGCTTTTGGGTATATGAAAGTCATATGCCCAAAAAGTTATATAGAACCTCAAGCTAGAAGTCAACAGCGTCCAACTTGTATCAACCCCGAGAATATCCGGTCCAGCAGTGCCATTGTAGAACCACCGGAAGAGACTCTGGTAGAATTATCTGGAAGAGAAGTTGGATCTTATAGCACTGGTCCCGCTGTTGATCCCTTTTGGCCACTCTGCTTGTATGAGCTTCGAGGAAAATGCAACAATGATGACTGTCCATGGCAACATGTTAGGGACTATAACACAACTTTGTATCAAGATCAGCATGGTAACTCTGATAGTACTGATTGTCAGGTTGGATCAACATTGCGTCGAAGAAAGTGTGATGGTTCAACAAAAGCCCCCTTGTATCGCAATGTAATATCTTCACCAACTTATCTAGTTGGCTTAGGTATTCTGAAAACTGATCTGCATTCATATGAATCTGTTCTAGCACGGCGAAATGGACAATTCTGGAAAAAGTGTTTCAGCCATTTCTTGGTGTTGTCAAATTTGTTTCGGAAAGATGTTTCTGCGGATGTACTGCATGGAAATGACGGTCACATACAGGCCCCCGTGAGTTTGAACAGACAGTCATCGTTTTTCCAGAATAGCAACGGAGGAGTGGATAAACTCACACAAGCTTTGGGTGACAATGATCAATACCTGGAGATTGCCCTGTTAATTTTCAGCCAGGAGGCTAACGAACTTGAGGGCATGAGAAAGGCTCTCCATGTGCTGTCACGAGCTCTTGAGGCAGAACCAACATCCATTATTCTCTGGATTTTTTATCTGCTTATTTACTATAGCAATATGAAGTCAGTAGGGGAAGATGACATGTTCTCCTGTGCGGTAAAATACAATGATCGATCTTATGAACTTTGGCTCATGTGCATCAACAGTCGGGTGCAGCTTGACGACCGGTTGATAACATATGATGTCGCCCTCTCAACACTGTGCCGCAATGCTCCTGATTCTGGCATAGATGGAATGCATGCTAGTGCATGCATCTTAGACCTAGTTTTGCAAATGATGGATTGTTTATGCATGTCTGGTAACATTGAGAAGGCCATTCAGAAAGTCTTTGGACTCTTCCCCATTGCTGAAAATTTTGATGACCCTAATTCCCTCTCGCTCTCTAATATACTCACATGCCTAAGTATTTATGACAAATGTATATTAGGGGTTTGTTGTGTTTACTTGGTTATTTACAGGAAACTTCCTGATGCTGTATTGCGGCAGTTTGAATGTCAGAAAGAACTCTCTGAATTTGAATGGCCTTCCATGGAATTAGTAGGTGATGAGAAGCAGAGGGCTATCATGCTGATGGATACAGTAGTAGGTTCTGTAGACTCATACATGAAAATTGAATCACTTGAGAAAAGTGAATCTAGTCTCAAATTGGCACATTTCATTGCTCTCAACCACTTAAAGTGCATGGCAGCTCTTGACAGCTTAGAAAGATGTAGGAACCTCTTGGATAAATATCTTACTCTGTACCCATCCTGCTTAGAACTTGTTTTAATATCAGCTCGGGCACATAAACATGAGACGGGGGATTCGCTTTTTGAGAGATTTGAAGAAGCCCTTGCTGAGTGGCCAAAAGAAGTCCCTGGAATCCAGTGTCTTTGGAATCAATACGTTGAGTGTGCCCTTCAGGATGGAAGATTTGATTTGGCTAAAGAAGTTATGGACCGCTGGTTTTGTTCTGATTGGAAAGTTCACTATCTTCAAAATGGTACATTGGATGGAATGAAACATGTTAACTCAAATAACTCTCTAGGAGATTCAGTTCGGCAGGCACTTGGTTCCGATCCTAATCGGATGGACGTAATGTTTGGACATCTTAATCTAGCTCTGCACAATCTCTTGCAGAATGACCACATTGAAGCTCGCTCAGCCCTTGATAGGGCACTGAATGCTGCTGTTCCACAATACTTGAAGCATTGTGTTAGAGAACATGCATCGTTTATGCTTACTGATGAATCTTTGTTAAAGGAGAATGGTTACATAAGTGGCATACAGAAGAATTTGGAGCACTATTTAGGTGTTTCTCAGGCTTTCCCTACCTCTGAGCCATTATCAAGAAATTTCATTAACAACGTCAAGAAGCCAAGAGTCTGGCAGCTAGTCAGTAATATCTTCAGTCCACTTTCATCTGATTTTTCTCTGGTGAATTTGGTTCTTGAAGTATGGTATGGACCATCTCTTTTACCGGAAAAGTTCGGTGAGCAAAAAGATCTGGTGGATTTTGTTGAAGCCATCTTGGACAAAACTCCATCCAACTATCAGTTAGCTGTTTCCGTATGTAAGCTGTTAAGCAGCGGCAGCAATGCCGGCGATGTTACTTCTCTCAGTGCTTTGTTTTGGGCTAGCTCGAACTTGGTCAGTGCAATTTTACATGCTGTCCCAATTCCACCGGAGTATGTATGGGTTGAAGCTGCGGAAACTTTGGGCAATATTGCTGGCGTGGAGGTTATTTCTGAGAGGTTTTATGAGAGAGCTTTATCTGTATATCCATTCTCTGTTAAGTTGTGGAAGTCCTACCAAAAACTTTCTATGATGACTACAGGAAATGCGAATGCTGTCGTGGAAGCAGCAAAAGAAAAAGGTATACAACTCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1774

Amino Acids

196.97

Weight (kDa)

5.45

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 963 - 983 2.6e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 3193
AccI GTMKAC 3 cut(s) 338, 4044, 5308
AccII CGCG 2 cut(s) 83, 666
AccIII TCCGGA 1 cut(s) 1502
AcoI YGGCCR 4 cut(s) 27, 1189, 2882, 4292
AcuI CTGAAG 8 cut(s) 201, 489, 788, 845, 2526, 2644, 4334, 4822
AfaI GTAC 8 cut(s) 333, 1107, 2122, 2383, 2998, 3237, 4193, 4435
AflII CTTAAG 1 cut(s) 2674
AflIII ACRYGT 6 cut(s) 941, 1255, 1730, 2941, 3531, 4453
AgeI ACCGGT 1 cut(s) 3615
AjiI CACGTC 1 cut(s) 770
AjnI CCWGG 8 cut(s) 391, 590, 1204, 1474, 2325, 3360, 3387, 4306
AloI GAACNNNNNNTCC 4 cut(s) 2612, 2644, 4470, 4502
Alw21I GWGCWC 6 cut(s) 102, 483, 2050, 2598, 3445, 4734
Alw26I GTCTC 7 cut(s) 1144, 1421, 1644, 2262, 2807, 4094, 4238
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 3 cut(s) 714, 2768, 4227
Aor13HI TCCGGA 1 cut(s) 1502
ArsI GACNNNNNNTTYG 6 cut(s) 2378, 2410, 4237, 4269, 4514, 4546
AsiGI ACCGGT 1 cut(s) 3615
Asp700I GAANNNNTTC 2 cut(s) 2241, 3141
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 7 cut(s) 1377, 1390, 3075, 3356, 4004, 4879, 4934
AsuNHI GCTAGC 1 cut(s) 5066
AvaI CYCGRG 3 cut(s) 714, 2768, 4227
AvaII GGWCC 9 cut(s) 414, 689, 1160, 1208, 2260, 2781, 2861, 4387, 4895
BaeGI GKGCMC 4 cut(s) 406, 4234, 4348, 4609
BaeI ACNNNNGTAYC 2 cut(s) 4017, 4050
BalI TGGCCA 3 cut(s) 1191, 2884, 4294
BamHI GGATCC 2 cut(s) 1354, 2329
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 3 cut(s) 102, 2553, 3445
BauI CACGAG 2 cut(s) 850, 3438
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 6 cut(s) 102, 483, 2050, 2598, 3445, 4734
BceAI ACGGC 3 cut(s) 42, 1449, 3167
BcgI CGANNNNNNTGC 8 cut(s) 941, 975, 1593, 1627, 2096, 2130, 2895, 2929
BciT130I CCWGG 8 cut(s) 393, 592, 1206, 1476, 2327, 3362, 3389, 4308
BciVI GTATCC 1 cut(s) 4018
BclI TGATCA 4 cut(s) 772, 829, 1183, 3352
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 7 cut(s) 1144, 1421, 1644, 2262, 2807, 4094, 4238
BfmI CTRYAG 3 cut(s) 3499, 4041, 5262
BfrI CTTAAG 1 cut(s) 2674
BfuI GTATCC 1 cut(s) 4018
BglII AGATCT 1 cut(s) 4933
BlpI GCTNAGC 1 cut(s) 4591
BmcAI AGTACT 1 cut(s) 2998
Bme1390I CCNGG 9 cut(s) 393, 592, 890, 1206, 1476, 2327, 3362, 3389, 4308
Bme18I GGWCC 9 cut(s) 414, 689, 1160, 1208, 2260, 2781, 2861, 4387, 4895
BmeT110I CYCGRG 3 cut(s) 714, 2768, 4227
BmgBI CACGTC 1 cut(s) 770
BmiI GGNNCC 9 cut(s) 403, 415, 1356, 1480, 2331, 2863, 3267, 4166, 4504
BmrFI CCNGG 9 cut(s) 393, 592, 890, 1206, 1476, 2327, 3362, 3389, 4308
BmrI ACTGGG 1 cut(s) 1072
BmtI GCTAGC 1 cut(s) 5070
BmuI ACTGGG 1 cut(s) 1072
BoxI GACNNNNGTC 1 cut(s) 1158
BpiI GAAGAC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 3406, 3438
BpmI CTGGAG 3 cut(s) 543, 1724, 3383
Bpu10I CCTNAGC 2 cut(s) 1989, 3103
Bpu1102I GCTNAGC 1 cut(s) 4591
BpuEI CTTGAG 9 cut(s) 240, 893, 1811, 1870, 2600, 2715, 3425, 3467, 4091
BpuMI CCSGG 1 cut(s) 890
Bsa29I ATCGAT 2 cut(s) 650, 3562
BsaAI YACGTR 1 cut(s) 827
BsaBI GATNNNNATC 2 cut(s) 4179, 4512
BsaJI CCNNGG 7 cut(s) 195, 664, 2263, 2325, 2933, 3978, 4306
BsaWI WCCGGW 6 cut(s) 1502, 2778, 2806, 3615, 4909, 5113
BsaXI ACNNNNNCTCC 6 cut(s) 2612, 2642, 3521, 3551, 4470, 4500
Bse118I RCCGGY 2 cut(s) 3615, 5030
Bse1I ACTGG 9 cut(s) 526, 993, 1078, 1327, 1548, 1875, 1948, 2863, 4315
Bse3DI GCAATG 8 cut(s) 361, 2132, 3020, 3076, 3664, 3792, 4107, 5032
Bse8I GATNNNNATC 2 cut(s) 4179, 4512
BseAI TCCGGA 1 cut(s) 1502
BseBI CCWGG 8 cut(s) 393, 592, 1206, 1476, 2327, 3362, 3389, 4308
BseCI ATCGAT 2 cut(s) 650, 3562
BseDI CCNNGG 7 cut(s) 195, 664, 2263, 2325, 2933, 3978, 4306
BseJI GATNNNNATC 2 cut(s) 4179, 4512
BseMI GCAATG 8 cut(s) 361, 2132, 3020, 3076, 3664, 3792, 4107, 5032
BseNI ACTGG 9 cut(s) 526, 993, 1078, 1327, 1548, 1875, 1948, 2863, 4315
BseRI GAGGAG 5 cut(s) 63, 1561, 1662, 2565, 3330
BseSI GKGCMC 4 cut(s) 406, 4234, 4348, 4609
BseX3I CGGCCG 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 2008
BsgI GTGCAG 3 cut(s) 2178, 3623, 4538
Bsh1236I CGCG 2 cut(s) 83, 666
Bsh1285I CGRYCG 2 cut(s) 30, 3616
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 3615
BshVI ATCGAT 2 cut(s) 650, 3562
BsiEI CGRYCG 2 cut(s) 30, 3616
BsiHKAI GWGCWC 6 cut(s) 102, 483, 2050, 2598, 3445, 4734
BsiHKCI CYCGRG 3 cut(s) 714, 2768, 4227
BsiSI CCGG 8 cut(s) 889, 1503, 2779, 2807, 3616, 4910, 5031, 5114
BslFI GGGAC 6 cut(s) 962, 2503, 2847, 2963, 4289, 5087
BsmAI GTCTC 7 cut(s) 1144, 1421, 1644, 2262, 2807, 4094, 4238
BsmBI CGTCTC 1 cut(s) 4238
BsmFI GGGAC 6 cut(s) 962, 2503, 2847, 2963, 4289, 5087
BsmI GAATGC 7 cut(s) 261, 601, 1663, 3127, 3690, 4618, 5281
BsoBI CYCGRG 3 cut(s) 714, 2768, 4227
Bsp13I TCCGGA 1 cut(s) 1502
Bsp1720I GCTNAGC 1 cut(s) 4591
Bsp19I CCATGG 2 cut(s) 2933, 3978
BspDI ATCGAT 2 cut(s) 650, 3562
BspEI TCCGGA 1 cut(s) 1502
BspFNI CGCG 2 cut(s) 83, 666
BspLI GGNNCC 9 cut(s) 403, 415, 1356, 1480, 2331, 2863, 3267, 4166, 4504
BspOI GCTAGC 1 cut(s) 5070
BspQI GCTCTTC 2 cut(s) 344, 1334
BspT107I GGYRCC 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 2674
BsrDI GCAATG 8 cut(s) 361, 2132, 3020, 3076, 3664, 3792, 4107, 5032
BsrFI RCCGGY 2 cut(s) 3615, 5030
BsrI ACTGG 9 cut(s) 526, 993, 1078, 1327, 1548, 1875, 1948, 2863, 4315
BssAI RCCGGY 2 cut(s) 3615, 5030
BssECI CCNNGG 7 cut(s) 195, 664, 2263, 2325, 2933, 3978, 4306
BssNAI GTATAC 1 cut(s) 5309
BssSI CACGAG 2 cut(s) 850, 3438
BssT1I CCWWGG 3 cut(s) 2263, 2933, 3978
Bst1107I GTATAC 1 cut(s) 5309
Bst2BI CACGAG 2 cut(s) 850, 3438
Bst2UI CCWGG 8 cut(s) 393, 592, 1206, 1476, 2327, 3362, 3389, 4308
Bst6I CTCTTC 7 cut(s) 126, 344, 1334, 2145, 2805, 2830, 3791
BstAFI CTTAAG 1 cut(s) 2674
BstAPI GCANNNNNTGC 2 cut(s) 305, 4613
BstBAI YACGTR 1 cut(s) 827
BstDSI CCRYGG 4 cut(s) 195, 664, 2933, 3978
BstENI CCTNNNNNAGG 2 cut(s) 216, 2142
BstFNI CGCG 2 cut(s) 83, 666
BstMAI GTCTC 7 cut(s) 1144, 1421, 1644, 2262, 2807, 4094, 4238
BstMCI CGRYCG 2 cut(s) 30, 3616
BstNI CCWGG 8 cut(s) 393, 592, 1206, 1476, 2327, 3362, 3389, 4308
BstPAI GACNNNNGTC 1 cut(s) 1158
BstSCI CCNGG 9 cut(s) 391, 590, 888, 1204, 1474, 2325, 3360, 3387, 4306
BstSFI CTRYAG 3 cut(s) 3499, 4041, 5262
BstSLI GKGCMC 4 cut(s) 406, 4234, 4348, 4609
BstUI CGCG 2 cut(s) 83, 666
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 6 cut(s) 710, 1354, 1699, 2329, 2846, 4933
BstXI CCANNNNNNTGG 2 cut(s) 764, 4815
BstYI RGATCY 6 cut(s) 710, 1354, 1699, 2329, 2846, 4933
BstZ17I GTATAC 1 cut(s) 5309
BstZI CGGCCG 1 cut(s) 27
Bsu15I ATCGAT 2 cut(s) 650, 3562
BsuI GTATCC 1 cut(s) 4018
BsuTUI ATCGAT 2 cut(s) 650, 3562
BtgI CCRYGG 4 cut(s) 195, 664, 2933, 3978
BtgZI GCGATG 1 cut(s) 5049
BtrI CACGTC 1 cut(s) 770
BtsI GCAGTG 2 cut(s) 466, 2794
CaiI CAGNNNCTG 1 cut(s) 224
Cfr10I RCCGGY 2 cut(s) 3615, 5030
Cfr42I CCGCGG 1 cut(s) 667
ClaI ATCGAT 2 cut(s) 650, 3562
CseI GACGC 3 cut(s) 29, 2738, 3014
CsiI ACCWGGT 1 cut(s) 1474
Csp6I GTAC 8 cut(s) 332, 1106, 2121, 2382, 2997, 3236, 4192, 4434
CspAI ACCGGT 1 cut(s) 3615
CspCI CAANNNNNGTGG 4 cut(s) 2874, 2909, 4614, 4649
CviQI GTAC 8 cut(s) 332, 1106, 2121, 2382, 2997, 3236, 4192, 4434
EaeI YGGCCR 4 cut(s) 27, 1189, 2882, 4292
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 7 cut(s) 126, 344, 1334, 2145, 2805, 2830, 3791
EarI CTCTTC 7 cut(s) 126, 344, 1334, 2145, 2805, 2830, 3791
Ecl136II GAGCTC 2 cut(s) 100, 3443
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 3 cut(s) 2263, 2933, 3978
Eco24I GRGCYC 3 cut(s) 102, 2553, 3445
Eco47I GGWCC 9 cut(s) 414, 689, 1160, 1208, 2260, 2781, 2861, 4387, 4895
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 2 cut(s) 100, 3443
Eco57I CTGAAG 8 cut(s) 201, 489, 788, 845, 2526, 2644, 4334, 4822
Eco88I CYCGRG 3 cut(s) 714, 2768, 4227
EcoICRI GAGCTC 2 cut(s) 100, 3443
EcoNI CCTNNNNNAGG 2 cut(s) 216, 2142
EcoO109I RGGNCCY 1 cut(s) 3265
EcoRI GAATTC 1 cut(s) 1200
EcoRII CCWGG 8 cut(s) 391, 590, 1204, 1474, 2325, 3360, 3387, 4306
EcoT14I CCWWGG 3 cut(s) 2263, 2933, 3978
EcoT22I ATGCAT 6 cut(s) 1665, 1986, 3690, 3704, 3743, 4660
EcoT38I GRGCYC 3 cut(s) 102, 2553, 3445
ErhI CCWWGG 3 cut(s) 2263, 2933, 3978
Esp3I CGTCTC 1 cut(s) 4238
FalI AAGNNNNNCTT 8 cut(s) 1034, 1066, 1384, 1416, 2668, 2700, 4266, 4298
FaqI GGGAC 6 cut(s) 962, 2503, 2847, 2963, 4289, 5087
FauI CCCGC 2 cut(s) 304, 2872
FauNDI CATATG 3 cut(s) 2705, 3133, 3628
FbaI TGATCA 4 cut(s) 772, 829, 1183, 3352
FblI GTMKAC 3 cut(s) 338, 4044, 5308
FriOI GRGCYC 3 cut(s) 102, 2553, 3445
GsaI CCCAGC 1 cut(s) 2012
GsuI CTGGAG 3 cut(s) 543, 1724, 3383
HapII CCGG 8 cut(s) 889, 1503, 2779, 2807, 3616, 4910, 5031, 5114
HgaI GACGC 3 cut(s) 29, 2738, 3014
HincII GTYRAC 3 cut(s) 2041, 2744, 4459
HindII GTYRAC 3 cut(s) 2041, 2744, 4459
HindIII AAGCTT 3 cut(s) 1559, 1761, 3336
HpaI GTTAAC 2 cut(s) 2041, 4459
HpaII CCGG 8 cut(s) 889, 1503, 2779, 2807, 3616, 4910, 5031, 5114
HphI GGTGA 7 cut(s) 1377, 1390, 3075, 3356, 4004, 4879, 4934
Hpy99I CGWCG 6 cut(s) 52, 155, 158, 161, 2606, 3030
HpyCH4IV ACGT 6 cut(s) 769, 826, 1730, 4335, 4524, 4797
HpySE526I ACGT 6 cut(s) 769, 826, 1730, 4335, 4524, 4797
Kpn2I TCCGGA 1 cut(s) 1502
KroI GCCGGC 1 cut(s) 5030
KroNI GCCGGC 1 cut(s) 5032
Ksp22I TGATCA 4 cut(s) 772, 829, 1183, 3352
KspAI GTTAAC 2 cut(s) 2041, 4459
KspI CCGCGG 1 cut(s) 667
LguI GCTCTTC 2 cut(s) 344, 1334
LmnI GCTCC 8 cut(s) 52, 97, 105, 190, 668, 980, 3667, 4729
MabI ACCWGGT 1 cut(s) 1474
MaeII ACGT 6 cut(s) 769, 826, 1730, 4335, 4524, 4797
MflI RGATCY 6 cut(s) 710, 1354, 1699, 2329, 2846, 4933
MlsI TGGCCA 3 cut(s) 1191, 2884, 4294
MluNI TGGCCA 3 cut(s) 1191, 2884, 4294
MlyI GAGTC 5 cut(s) 247, 2809, 3777, 4040, 4821
MmeI TCCRAC 9 cut(s) 30, 174, 441, 1235, 1902, 2777, 2824, 2992, 5001
Mox20I TGGCCA 3 cut(s) 1191, 2884, 4294
Mph1103I ATGCAT 6 cut(s) 1665, 1986, 3690, 3704, 3743, 4660
MroI TCCGGA 1 cut(s) 1502
MroNI GCCGGC 1 cut(s) 5030
MroXI GAANNNNTTC 2 cut(s) 2241, 3141
MscI TGGCCA 3 cut(s) 1191, 2884, 4294
Msp20I TGGCCA 3 cut(s) 1191, 2884, 4294
MspA1I CMGCKG 5 cut(s) 666, 1148, 2867, 4392, 5019
MspCI CTTAAG 1 cut(s) 2674
MspI CCGG 8 cut(s) 889, 1503, 2779, 2807, 3616, 4910, 5031, 5114
MspR9I CCNGG 9 cut(s) 393, 592, 890, 1206, 1476, 2327, 3362, 3389, 4308
Mva1269I GAATGC 7 cut(s) 261, 601, 1663, 3127, 3690, 4618, 5281
MvaI CCWGG 8 cut(s) 393, 592, 1206, 1476, 2327, 3362, 3389, 4308
MvnI CGCG 2 cut(s) 83, 666
NaeI GCCGGC 1 cut(s) 5032
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 2 cut(s) 2933, 3978
NdeI CATATG 3 cut(s) 2705, 3133, 3628
NgoMIV GCCGGC 1 cut(s) 5030
NheI GCTAGC 1 cut(s) 5066
NlaIV GGNNCC 9 cut(s) 403, 415, 1356, 1480, 2331, 2863, 3267, 4166, 4504
NmuCI GTSAC 7 cut(s) 517, 1378, 1540, 1550, 3254, 3344, 3435
NsiI ATGCAT 6 cut(s) 1665, 1986, 3690, 3704, 3743, 4660
PaeI GCATGC 2 cut(s) 3692, 3702
PaeR7I CTCGAG 1 cut(s) 714
PciI ACATGT 5 cut(s) 941, 1255, 2941, 3531, 4453
PciSI GCTCTTC 2 cut(s) 344, 1334
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 7 cut(s) 261, 601, 1663, 3127, 3690, 4618, 5281
PdiI GCCGGC 1 cut(s) 5032
PdmI GAANNNNTTC 2 cut(s) 2241, 3141
PflMI CCANNNNNTGG 1 cut(s) 3193
PfoI TCCNGGA 1 cut(s) 888
PinAI ACCGGT 1 cut(s) 3615
PleI GAGTC 5 cut(s) 247, 2809, 3777, 4040, 4820
PpsI GAGTC 5 cut(s) 247, 2809, 3777, 4040, 4820
Ppu21I YACGTR 1 cut(s) 827
PscI ACATGT 5 cut(s) 941, 1255, 2941, 3531, 4453
PshAI GACNNNNGTC 1 cut(s) 1158
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 2 cut(s) 102, 3445
Psp6I CCWGG 8 cut(s) 391, 590, 1204, 1474, 2325, 3360, 3387, 4306
PspFI CCCAGC 1 cut(s) 2008
PspGI CCWGG 8 cut(s) 391, 590, 1204, 1474, 2325, 3360, 3387, 4306
PspN4I GGNNCC 9 cut(s) 403, 415, 1356, 1480, 2331, 2863, 3267, 4166, 4504
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 6 cut(s) 710, 1354, 1699, 2329, 2846, 4933
RsaI GTAC 8 cut(s) 333, 1107, 2122, 2383, 2998, 3237, 4193, 4435
RsaNI GTAC 8 cut(s) 332, 1106, 2121, 2382, 2997, 3236, 4192, 4434
SacI GAGCTC 2 cut(s) 102, 3445
SacII CCGCGG 1 cut(s) 667
SapI GCTCTTC 2 cut(s) 344, 1334
ScaI AGTACT 1 cut(s) 2998
SchI GAGTC 5 cut(s) 247, 2809, 3777, 4040, 4821
ScrFI CCNGG 9 cut(s) 393, 592, 890, 1206, 1476, 2327, 3362, 3389, 4308
SexAI ACCWGGT 1 cut(s) 1474
SfcI CTRYAG 3 cut(s) 3499, 4041, 5262
Sfr274I CTCGAG 1 cut(s) 714
Sfr303I CCGCGG 1 cut(s) 667
SgrBI CCGCGG 1 cut(s) 667
SinI GGWCC 9 cut(s) 414, 689, 1160, 1208, 2260, 2781, 2861, 4387, 4895
SlaI CTCGAG 1 cut(s) 714
SphI GCATGC 2 cut(s) 3692, 3702
SspI AATATT 1 cut(s) 5155
SstI GAGCTC 2 cut(s) 102, 3445
StyD4I CCNGG 9 cut(s) 391, 590, 888, 1204, 1474, 2325, 3360, 3387, 4306
StyI CCWWGG 3 cut(s) 2263, 2933, 3978
TaiI ACGT 6 cut(s) 772, 829, 1733, 4338, 4527, 4800
TaqI TCGA 9 cut(s) 650, 715, 1613, 2553, 2604, 2905, 3028, 3562, 5072
TatI WGTACW 3 cut(s) 2120, 2996, 3235
TseFI GTSAC 7 cut(s) 517, 1378, 1540, 1550, 3254, 3344, 3435
Tsp45I GTSAC 7 cut(s) 517, 1378, 1540, 1550, 3254, 3344, 3435
TspGWI ACGGA 6 cut(s) 110, 319, 2480, 2590, 3327, 4987
Van91I CCANNNNNTGG 1 cut(s) 3193
Vha464I CTTAAG 1 cut(s) 2674
VpaK11BI GGWCC 9 cut(s) 414, 689, 1160, 1208, 2260, 2781, 2861, 4387, 4895
XagI CCTNNNNNAGG 2 cut(s) 216, 2142
XbaI TCTAGA 1 cut(s) 1468
XcmI CCANNNNNNNNNTGG 2 cut(s) 974, 1913
XhoI CTCGAG 1 cut(s) 714
XmiI GTMKAC 3 cut(s) 338, 4044, 5308
XmnI GAANNNNTTC 2 cut(s) 2241, 3141
ZrmI AGTACT 1 cut(s) 2998
Zsp2I ATGCAT 6 cut(s) 1665, 1986, 3690, 3704, 3743, 4660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.