Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006458

Physical Location & Seq

Genomic Coordinates Forward (+)

23294326 .. 23296202

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCCTAAAGATCAGAGAGGTGTAATTAGATCACGTTCTGAACCGGCTTTGAACCCTAATGGACTCAGAGACAAATCTTTGGCTCCTTCTACGTCACTTGCTGCCAATCCCGATGATACTGATACATTCTATGATCAGGGTTGCATTCTTTCTGATGTGTTTACAATTAATCTTTCGAATGTATGTTTTCTCCACAACAATTGTGCAGCGGAATCAGCTGATACAAGTTGCAAAGATTCAGATGTTAGATGCTATGGTGATGAAGATGCATCTTGGATATCATGGTTCTGCAATCAGAAAGGGAATGAATTCTTCTGTGAAGTCGACGATGATTACATCCTCGATGATTTCAACCGTTCAGGTTTAAGAAACCACGTACCATTCTATGATTATGCACTGGATTTAATGTTGGACATTGAGTCTTCCAATGATGGCTTAACTGATGAGGAACAGAACAATCTGATCGAATCCGCGACGGAGATGCTCTACGGTTTAATTCATGCCAGATACATAGCAACTAACAAGGGATTATCTGCAATGTGTGCAATTCAGTTGGAGAAGTACAGGAACTATGATTTTGGCAGATGCCCGAGAGTGAACTGCAATAAACAACGTTGTCTGCCTGTTGGTGAGTCAGACATCCCAAGATTAAGCACTGTAAAAATCTATTGTCCCAAATGTGAAGACATTTATTCCCCACAATCCAGACACCAAGAAGGTATCCTTATGTATCAAATTGATGGAGCATACTTTGGAACCACATTTCCTCATCTTTTCTTCTTGACCTACGGGCATCTTAAGCCGCAGAAGGCGATTCAGAACAATGTTCCAAGAATATACGGCTTCAAAGTCCGCAACGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005956 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019207 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032991 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0098772 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

289

Amino Acids

32.8

Weight (kDa)

4.88

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	91 - 283	2.6e-69	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17640 AT4G17640 AT5G47080 AT5G47080 AT5G47080 AT5G47080
fragaria_vesca	FvH4_7g26460 FvH4_7g26460
malus_domestica	MD01G1173300.v1.1 MD07G1240200.v1.1
prunus_persica	Prupe.2G268900_v2.0.a1
pyrus_communis	pycom07g21660
rosa_chinensis	RchiOBHm_Chr1g0373051
rosa_laevigata	RLG00000026854
rosa_multiflora	Rmu_ssc0000425.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251520 Rroxscaffold_4G00284510
rosa_rugosa	Rorug01G0375600 Rorug01G0375700 Rorug01G0375700
rosa_samantha	Rh1AG384000 Rh1BG348000 Rh1CG361400 Rh1DG378900 Rh7AG229100
rosa_wichuraiana	Rw1G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	473
AciI	CCGC	4 cut(s)	209, 471, 803, 853
AclI	AACGTT	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	2 cut(s)	378, 563
AflII	CTTAAG	1 cut(s)	797
AgsI	TTSAA	3 cut(s)	52, 352, 847
AhdI	GACNNNNNGTC	1 cut(s)	418
AloI	GAACNNNNNNTCC	2 cut(s)	748, 780
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	589
ApeKI	GCWGC	2 cut(s)	101, 206
ApoI	RAATTY	1 cut(s)	308
AseI	ATTAAT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	269, 641
AsuII	TTCGAA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	589
BbsI	GAAGAC	2 cut(s)	414, 690
BbvI	GCAGC	2 cut(s)	88, 218
BccI	CCATC	2 cut(s)	425, 734
BceAI	ACGGC	1 cut(s)	856
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	63
BfrI	CTTAAG	1 cut(s)	797
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	3 cut(s)	102, 207, 803
BlsI	GCNGC	3 cut(s)	103, 208, 804
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	589
BmiI	GGNNCC	2 cut(s)	84, 757
BmsI	GCATC	6 cut(s)	239, 256, 278, 471, 575, 802
BpiI	GAAGAC	2 cut(s)	414, 690
Bpu14I	TTCGAA	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	376
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	543
BseGI	GGATG	2 cut(s)	336, 639
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	88, 218
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	657
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	589
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	10, 29, 133, 462
BspACI	CCGC	4 cut(s)	209, 471, 803, 853
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	2 cut(s)	84, 757
BspT104I	TTCGAA	1 cut(s)	176
BspTI	CTTAAG	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	4 cut(s)	10, 29, 133, 462
Bst4CI	ACNGT	3 cut(s)	356, 491, 658
BstAFI	CTTAAG	1 cut(s)	797
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	336, 639
BstFNI	CGCG	1 cut(s)	473
BstKTI	GATC	4 cut(s)	13, 32, 136, 465
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	10, 29, 133, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 542, 799
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	88, 218
BstV2I	GAAGAC	2 cut(s)	414, 690
BsuI	GTATCC	1 cut(s)	731
BtsCI	GGATG	2 cut(s)	336, 639
BtsIMutI	CAGTG	2 cut(s)	395, 654
Cfr10I	RCCGGY	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	377, 562
CspCI	CAANNNNNGTGG	2 cut(s)	182, 217
CviAII	CATG	2 cut(s)	282, 500
CviJI	RGCY	6 cut(s)	47, 83, 218, 435, 802, 843
CviKI_1	RGCY	6 cut(s)	47, 83, 218, 435, 802, 843
CviQI	GTAC	2 cut(s)	377, 562
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	4 cut(s)	12, 31, 135, 464
DpnII	GATC	4 cut(s)	10, 29, 133, 462
DriI	GACNNNNNGTC	1 cut(s)	418
Eam1105I	GACNNNNNGTC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	308
EcoRV	GATATC	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	2 cut(s)	285, 503
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	2 cut(s)	281, 499
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	102, 207, 803
FokI	GGATG	2 cut(s)	323, 626
Fsp4HI	GCNGC	3 cut(s)	102, 207, 803
GluI	GCNGC	3 cut(s)	102, 207, 803
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	285, 503
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	7 cut(s)	63, 212, 236, 419, 467, 632, 814
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	269, 641
Hpy166II	GTNNAC	3 cut(s)	162, 325, 598
Hpy188I	TCNGA	9 cut(s)	15, 40, 68, 154, 241, 297, 462, 637, 819
Hpy188III	TCNNGA	3 cut(s)	110, 705, 781
Hpy8I	GTNNAC	3 cut(s)	162, 325, 598
Hpy99I	CGWCG	2 cut(s)	329, 478
HpyAV	CCTTC	3 cut(s)	96, 710, 802
HpyCH4III	ACNGT	3 cut(s)	356, 491, 658
HpyCH4IV	ACGT	4 cut(s)	34, 92, 375, 613
HpyCH4V	TGCA	9 cut(s)	144, 206, 231, 269, 291, 395, 536, 545, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 542, 799
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	4 cut(s)	34, 92, 375, 613
Hsp92II	CATG	2 cut(s)	285, 503
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	10, 29, 133, 462
LmnI	GCTCC	2 cut(s)	88, 743
LpnPI	CCDG	8 cut(s)	57, 122, 345, 383, 517, 550, 636, 718
Lsp1109I	GCAGC	2 cut(s)	88, 218
LweI	GCATC	6 cut(s)	239, 256, 278, 471, 575, 802
MaeII	ACGT	4 cut(s)	34, 92, 375, 613
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	4 cut(s)	12, 31, 135, 464
MboI	GATC	4 cut(s)	10, 29, 133, 462
MboII	GAAGA	5 cut(s)	275, 304, 414, 695, 769
MfeI	CAATTG	1 cut(s)	199
MluCI	AATT	7 cut(s)	24, 165, 199, 308, 495, 546, 735
MlyI	GAGTC	3 cut(s)	57, 428, 641
MmeI	TCCRAC	2 cut(s)	390, 534
MnlI	CCTC	4 cut(s)	11, 350, 439, 777
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	7 cut(s)	168, 365, 404, 437, 494, 650, 798
MspA1I	CMGCKG	2 cut(s)	209, 218
MspCI	CTTAAG	1 cut(s)	797
MspI	CCGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	144
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	215, 542, 799
NdeII	GATC	4 cut(s)	10, 29, 133, 462
NlaIII	CATG	2 cut(s)	285, 503
NlaIV	GGNNCC	2 cut(s)	84, 757
NmuCI	GTSAC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	176
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	4 cut(s)	212, 236, 467, 814
PkrI	GCNGC	3 cut(s)	103, 208, 804
PleI	GAGTC	3 cut(s)	57, 427, 640
PpsI	GAGTC	3 cut(s)	57, 427, 640
Ppu21I	YACGTR	1 cut(s)	376
PshBI	ATTAAT	1 cut(s)	168
Psp1406I	AACGTT	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	84, 757
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	378, 563
RsaNI	GTAC	2 cut(s)	377, 562
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	7 cut(s)	168, 365, 404, 437, 494, 650, 798
SatI	GCNGC	3 cut(s)	102, 207, 803
Sau3AI	GATC	4 cut(s)	10, 29, 133, 462
SchI	GAGTC	3 cut(s)	57, 428, 641
SetI	ASST	9 cut(s)	22, 37, 95, 220, 364, 378, 616, 721, 788
SfaNI	GCATC	6 cut(s)	239, 256, 278, 471, 575, 802
SfuI	TTCGAA	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	7 cut(s)	24, 165, 199, 308, 495, 546, 735
SsiI	CCGC	4 cut(s)	209, 471, 803, 853
TaaI	ACNGT	3 cut(s)	356, 491, 658
TaiI	ACGT	4 cut(s)	37, 95, 378, 616
TaqI	TCGA	4 cut(s)	176, 324, 342, 465
TasI	AATT	7 cut(s)	24, 165, 199, 308, 495, 546, 735
TatI	WGTACW	1 cut(s)	561
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	4 cut(s)	212, 236, 467, 814
Tru1I	TTAA	7 cut(s)	168, 365, 404, 437, 494, 650, 798
Tru9I	TTAA	7 cut(s)	168, 365, 404, 437, 494, 650, 798
TscAI	CASTG	2 cut(s)	402, 661
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	2 cut(s)	101, 206
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	3 cut(s)	276, 321, 488
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	402, 661
Vha464I	CTTAAG	1 cut(s)	797
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.