Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013024

Physical Location & Seq

Genomic Coordinates Reverse (-)

542915 .. 543313

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTGCTTTCGGTGTTTTTGACGATGTTTCTGCCGTGCGTGGGGATAAGCGCGGTGTTCATAGTGTACGTATGTCTGTTATGGTACGCTACGAACGACCAGGCCGGCGACATTGGCCTGCCTGTCAAGCAGGCTTCCGAGAAGGGGTTGTCGGCGTCAGAACTCGACAAGTTGCCTAAAATAACGGGGAAAGAGGTGATGGCGGAGAGGAGGGAATGTGCGGTGTGTTTGGACGATATCGACGGAGAGCAACCGGCGCGGGTGGTTCCCGGCTGTAACCACGCCTTCCATCTGCTGTGCGCCGATACCTGGCTTTCGAAGCACTCGTTTTGCCCGGTTTGTCGAGCAAAAATTCACCCGGTTGATCAGTCTCTCGATGTTTCTGAGAATCCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

133

Amino Acids

14.45

Weight (kDa)

5.22

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	72 - 115	2.5e-13	Ring finger domain
zf-RING_11	PF17123	72 - 100	3e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	72 - 114	3.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	73 - 115	5.5e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42200
fragaria_vesca	FvH4_2g38021
malus_domestica	MD08G1008600.v1.1 MD15G1007400.v1.1
prunus_persica	Prupe.1G360300_v2.0.a1
pyrus_communis	pycom08g00680
rosa_chinensis	RchiOBHm_Chr6g0303581
rosa_laevigata	RLG00000011067 RLG00000011071
rosa_multiflora	Rmu_ssc0000114.1_g000026
rosa_roxburghii	Rroxscaffold_7G00164610
rosa_rugosa	Rorug06G0322500
rosa_samantha	Rh6BG465900 Rh6BG466400 Rh6CG448900 Rh6DG436100
rosa_wichuraiana	Rw6G037820 Rw6G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	53, 259
AciI	CCGC	4 cut(s)	53, 203, 221, 259
AcsI	RAATTY	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	68, 86
AfiI	CCNNNNNNNGG	3 cut(s)	41, 144, 309
AjnI	CCWGG	2 cut(s)	99, 308
Alw26I	GTCTC	1 cut(s)	375
AoxI	GGCC	2 cut(s)	102, 115
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	351
AspLEI	GCGC	3 cut(s)	53, 259, 302
AsuC2I	CCSGG	3 cut(s)	270, 335, 359
AsuHPI	GGTGA	2 cut(s)	208, 347
AsuII	TTCGAA	1 cut(s)	317
BccI	CCATC	2 cut(s)	193, 297
BceAI	ACGGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	2 cut(s)	101, 310
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	3 cut(s)	270, 335, 359
BcoDI	GTCTC	1 cut(s)	375
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	5 cut(s)	101, 270, 310, 335, 359
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	5 cut(s)	101, 270, 310, 335, 359
Bpu14I	TTCGAA	1 cut(s)	317
BpuMI	CCSGG	3 cut(s)	270, 335, 359
BsaAI	YACGTR	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 144, 309
Bse118I	RCCGGY	2 cut(s)	104, 253
BseBI	CCWGG	2 cut(s)	101, 310
BseLI	CCNNNNNNNGG	3 cut(s)	41, 144, 309
BseMII	CTCAG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	223
Bsh1236I	CGCG	2 cut(s)	53, 259
BshFI	GGCC	2 cut(s)	104, 117
BsiSI	CCGG	5 cut(s)	105, 254, 270, 335, 359
BslI	CCNNNNNNNGG	3 cut(s)	41, 144, 309
BsmAI	GTCTC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	104, 117
Bsp119I	TTCGAA	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	4 cut(s)	53, 203, 221, 259
BspANI	GGCC	2 cut(s)	104, 117
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	2 cut(s)	53, 259
BspLI	GGNNCC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	317
BsrFI	RCCGGY	2 cut(s)	104, 253
BssAI	RCCGGY	2 cut(s)	104, 253
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	101, 310
BstACI	GRCGYC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	106, 119, 132
BstDEI	CTNAG	1 cut(s)	384
BstFNI	CGCG	2 cut(s)	53, 259
BstHHI	GCGC	3 cut(s)	53, 259, 302
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 127, 256, 319
BstNI	CCWGG	2 cut(s)	101, 310
BstSCI	CCNGG	5 cut(s)	99, 268, 308, 333, 357
BstSNI	TACGTA	1 cut(s)	70
BstUI	CGCG	2 cut(s)	53, 259
BsuRI	GGCC	2 cut(s)	104, 117
Cac8I	GCNNGC	3 cut(s)	106, 119, 132
CfoI	GCGC	3 cut(s)	53, 259, 302
Cfr10I	RCCGGY	2 cut(s)	104, 253
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	67, 85
CviJI	RGCY	5 cut(s)	104, 117, 134, 273, 313
CviKI_1	RGCY	5 cut(s)	104, 117, 134, 273, 313
CviQI	GTAC	2 cut(s)	67, 85
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	218
Eco105I	TACGTA	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	99, 308
EcoRV	GATATC	1 cut(s)	238
FaiI	YATR	3 cut(s)	62, 73, 82
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	3 cut(s)	52, 258, 301
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	104, 117
HapII	CCGG	5 cut(s)	105, 254, 270, 335, 359
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	3 cut(s)	53, 259, 302
Hin1I	GRCGYC	1 cut(s)	155
Hin6I	GCGC	3 cut(s)	51, 257, 300
HinP1I	GCGC	3 cut(s)	51, 257, 300
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	5 cut(s)	105, 254, 270, 335, 359
HphI	GGTGA	2 cut(s)	208, 347
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	139, 160, 385
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	136, 295
HpyCH4IV	ACGT	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 127, 256, 319
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	155
HspAI	GCGC	3 cut(s)	51, 257, 300
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	364
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MluCI	AATT	1 cut(s)	351
MnlI	CCTC	3 cut(s)	187, 201, 204
MroNI	GCCGGC	1 cut(s)	104
MspI	CCGG	5 cut(s)	105, 254, 270, 335, 359
MspR9I	CCNGG	5 cut(s)	101, 270, 310, 335, 359
MvaI	CCWGG	2 cut(s)	101, 310
MvnI	CGCG	2 cut(s)	53, 259
MwoI	GCNNNNNNNGC	4 cut(s)	114, 127, 256, 319
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	3 cut(s)	270, 335, 359
NdeII	GATC	1 cut(s)	364
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 323
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	6
Ppu21I	YACGTR	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	99, 308
PspGI	CCWGG	2 cut(s)	99, 308
PspN4I	GGNNCC	1 cut(s)	267
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	364
ScrFI	CCNGG	5 cut(s)	101, 270, 310, 335, 359
SetI	ASST	3 cut(s)	72, 198, 311
SfuI	TTCGAA	1 cut(s)	317
SnaBI	TACGTA	1 cut(s)	70
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	4 cut(s)	53, 203, 221, 259
StyD4I	CCNGG	5 cut(s)	99, 268, 308, 333, 357
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	5 cut(s)	165, 240, 317, 343, 375
TasI	AATT	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	2 cut(s)	258, 381
XapI	RAATTY	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.