Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Forward (+)

1153113 .. 1157515

Gene Structure 4403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3489 bp

ATGGGCTTGTTACTACAGTGGCATTGGAATTATCCAATGCAACAAACCATGCTGAGTGCAAGGCGGATCGATCCGGAAAACACAAGTTTTGATGCAAGGTTACAAAGTAAATTGGACAATAAGGATGTTTCAAGTAGTGATCCAATTGGTGAGACATTGGGTGATGGAGGTGTCCCTCTTGTAACTCCAGAGTTAAAGAATGTATCACATAGTACTCAGTGTGCATCACAAGATCATGCAGTGAGAAATAATAATCTGCAATGTGGTCTGGAAGTCAAAAAGAAAATCATTGTCATAGGTGCTGGTCCTGCTGGATTAACTGCTGCACGCCACTTGCAACGTCAGGGCTTTTTAGTCACTATATTGGAAGCTAGGAGTAGGATAGGGGGCCGTGTTTATACAGACAGGTCATCTCTATCAGTTCCTGTGGATCTTGGTGCGAGCATTATAACTGGTGTTGAGGCTGATTGGGCAACTGAAAGACGACCAGACCCCTCCTCTTTGGTTTGTGCTCAGCTGGGCCTAGAGTTGACTGTCTTAAACAGTGATTGCCCTCTTTATGACATTGCAACAGGTGAAAAGGTTCCTGCAGATCTGGATGAAGCATTGGAAGCAGAGTTCAACAGCCTTCTTGATGACATGGTATTGCTTGTTGCACGGGAGGGAGAACAGACGAGAATGTCCCTCGAGGAAGGTTTGGAATATGCCCTCAAGAGGCGTCGTATGGAAAAAACAGGGACTAGTATTGAAGAAAAAGAACTGCATGGTTTAATGGATGGTTTCACTGATGCCAAAAAAAGTATTGATAGAGGTGAAGAAAGTTGTCAAAAGCAAGAGCTTTTGAGCCCTCTTGAGAGGAGGGTCATGGATTGGCATTTTGCCAATTTGGAATATGGTTGTGCTACTCTGCTGAAGGAGGTATCTCTCCCCAACTGGAACCAGGATGATGTTTATGGTGGCTTTGGAGGAGCTCACTGCATGATTAAAGGGGGTTACAGCACTGTTGTTGAGTCTCTTGGAGAAGGACTTCAAATTCACTTGAATCATGTAGTAACTGATGTTTCATATGGCACCAAGGATGCAGGATTGAATAATAACCAGTGTAACAAGGTCAAGGTTTCCACATCTAATGGCAGCGATTTTTCAGGAGATGCAGTTTTGATTACGGTGCCTCTTGGGTGCTTAAAATCAGAAACCATCAAATTTTCCCCACCGTTACCCCACTGGAAACATTCTTCCATCCTGCGGCTTGGGTTTGGAGTTCTTAATAAAGTAGTTTTGGAATTTCAGGATGTCTTTTGGGATGACTCTGTGGATTACTTTGGAGCAACTGCTGAGGAAACAGACCTGAGGGGCCAGTGCTTTATGTTCTGGAATGTCAAGAAAACCGTTGGGGCTCCTGTTCTTATAGCTTTAGTGGTTGGTAAGGCAGCTATAGATGGGCAAAAGATGAGCGCTTCTGAACATGTTAACCATGCTTTAGTGGTACTTCGTAAATTGTTTGGAGAGGCTTCAGTACCTGATCGATCTCTTGCATCAGTTGTGACAGATTGCGGTAGGGATCCTTTCAGCTATGGTGCCTACTCATATGTTGCTGTTGGAGCTTCGGGGGAAGATTATGATATACTAGGGAGACCTGTTGAGAGCTGCCTATTTTTTGCTGGTGAAGCTACCTGCAAGGAGCATCCTGACACTGTTGGTGGCGCAATGATGAGTGGCCTTCGGGAGGCAGTGCGTATAATTGACATACTGACTACTGGAAATGATTACACAGCAGAAGCAGAGGCAATTGCGGGTATTCAGAGACAATCAGATTCTGAAAGGGATGAAGTTAGAGACATGACAAGGAGACTTGATGCAGTTGAACTTTCAAATGTCCCTTACAAGAACAAAGAAGCCCTACTCCACGACATGTTCTTTAATGCAAAGACTACTAAAGGAAGGTTGCATCTGGCCAAAGAGTTATTAAATCTTCCCGTTGAAACCTTGAAGTCCTTTGCTGGCACCAAAGAAGGGCTGACTATTCTCAACTCGTGGATACTGGACTCGATGGGGAAGGCTGGGACTCAACTCTTGCGGCATTGTGTTCGGCTCCTTGTGCTTGTTTCAACGGACCTACTGGCTGTGCGCTTGTCTGGCATTGGGAAGACTGTAAGAGAAAAAGTTTGTGTACATACGAGCCGTGATATACGTGCCATAGCAAGTCAGCTGGTTAATGTGTGGCTTGAAGTTTTTCGCAAGGAAAAAGCTTCCAATGGTGCATTGAAGTTGTCAAGGCAAGCAACTGCTGCAGATGCATGGAAGAGAAAAACAATTAGAGATCCATCTTCTAGTAAGCCACCTCTACACACATTTCATTGTGGTTTGGAGCACAAAGGAAGCTTACAGGATTCAGCATCCACTGCAAGCCATTTGCCTTTGAATGCAAATGGTAAGAAAGTGAACGGCAAATCTATTAAGGGTGAAACAGAAAATTCCTCAAAATCGGAGATCAATTCATCAAGGTTTCGTGGTTCAACAGACAGGCCACATTCTGAGCTAAAGGAGATTGACGTTTCTGTGACAGAAGCAGAAAGAGCTGCCATTGCTGCTGCTGAAGCAGCCCGTGCAGCAGCACTTGCAGCTGCTGAGGCATATGCATCTTCAGAAGCCAAGAGCAGTACACTGCTTCAGCTTCCCAAGATTCCCTCATTTCATAAGTTTGCTCGACGGGAGCAGTACCCTCAAATGGATGAGTATGATTTTAGGAGGAAGTGGTCTGGTGGTGTTTTGGGTAGACAAGATTGTGTATCAGAAATAGACTCCAGGAACTGCAAAGTTAGGGATTGGTCTGTTGATTTCTCTGCTGCTTGCGTCAATATTGATAGTTCAAGAATGTCAGTCGATAACCTCTCCCAGCGGAGCAATCCAAATGAGACTGCTAGTCAAACGAATTTCAGAGAGCACTCAGGAGAGAGTGCTGCTGTCGACAGCAGTATTTATACAAGAGCATGGGTTGATACAGCTGGTAGTGCCGGGATAAAGGATTATCATGCCATTGAGATGTGGCAATCTCAAGCAGCTGCAGCAGACCCTGATTTTTTCCATTCAGCACCGTATATAAATGACGAGGAAGATTCAAATACGACTTCGAGAAAACACAGCTGGAAGAATGAAGGACCTGTAAATGAGAGCTCTGTTTCCCAAGTTACCATGAACAAGGAGTCATTAAAAAGTCATCATCGAGGAGCAGATAATATCAAGCAGGCTGTTGTCGATTATGTGGCTTCATTGCTTATGCCCCTTTATAAAGCTAAAAAAATAGATAGAGAGGGATACAAGTCAATCATGAAGAAAAGTGCTACCAAGGTCATGGAGCTGGCCACAGACTCAGAAAAAGCCATGGCTGTTTATGAGTTTCTTGATTTCAAGCGCAGGAACAAGATCCGTGCATTTGTGGATACATTGATTGAGAGGCACATGGCAGCGAAGCCCACAATGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

1163

Amino Acids

127.82

Weight (kDa)

6.17

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thi4	PF01946	93 - 132	6.4e-06	Thi4 family
DAO	PF01266	95 - 130	1.7e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	98 - 154	4.5e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	104 - 581	1.8e-85	Flavin containing amine oxidoreductase
SCAF11-like_C	PF23030	1079 - 1125	1.3e-06	SCAF11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	449, 3288
AasI	GACNNNNNNGTC	1 cut(s)	679
AbsI	CCTCGAGG	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	1682
AccB1I	GGYRCC	4 cut(s)	1070, 1168, 1577, 2003
AccI	GTMKAC	2 cut(s)	2776, 2967
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	6 cut(s)	64, 1246, 1554, 1793, 2077, 2899
AclWI	GGATC	8 cut(s)	65, 74, 134, 438, 1556, 1569, 2315, 3418
AcoI	YGGCCR	2 cut(s)	1953, 3360
AcsI	RAATTY	5 cut(s)	1032, 1202, 1283, 2473, 2932
AcuI	CTGAAG	5 cut(s)	932, 1497, 2616, 2628, 2654
AcyI	GRCGYC	1 cut(s)	718
AfaI	GTAC	6 cut(s)	214, 1488, 1518, 2172, 2662, 2720
AfeI	AGCGCT	1 cut(s)	1456
AfiI	CCNNNNNNNGG	5 cut(s)	714, 1245, 1726, 2013, 2728
AflIII	ACRYGT	2 cut(s)	1465, 1911
AhdI	GACNNNNNGTC	1 cut(s)	2922
AhlI	ACTAGT	1 cut(s)	740
AjnI	CCWGG	2 cut(s)	939, 2804
AloI	GAACNNNNNNTCC	2 cut(s)	602, 634
Alw21I	GWGCWC	5 cut(s)	514, 973, 2373, 2946, 3176
Alw26I	GTCTC	7 cut(s)	146, 1017, 1627, 1798, 1830, 1843, 2909
AlwI	GGATC	8 cut(s)	65, 74, 134, 438, 1556, 1569, 2315, 3418
AlwNI	CAGNNNCTG	6 cut(s)	425, 1520, 1817, 2627, 2811, 3074
Ama87I	CYCGRG	1 cut(s)	686
Aor13HI	TCCGGA	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	1456
AoxI	GGCC	7 cut(s)	388, 520, 1354, 1717, 1953, 2525, 3360
ApoI	RAATTY	5 cut(s)	1032, 1202, 1283, 2473, 2932
Asp700I	GAANNNNTTC	3 cut(s)	582, 1026, 2232
AspLEI	GCGC	4 cut(s)	1457, 1706, 2130, 3414
AspS9I	GGNCC	6 cut(s)	305, 388, 520, 1354, 2113, 3158
AsuC2I	CCSGG	1 cut(s)	3016
AsuHPI	GGTGA	6 cut(s)	161, 173, 587, 824, 1676, 2474
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	3 cut(s)	305, 2113, 3158
AxyI	CCTNAGG	1 cut(s)	1349
BalI	TGGCCA	2 cut(s)	1955, 3362
BamHI	GGATCC	1 cut(s)	1561
BanI	GGYRCC	4 cut(s)	1070, 1168, 1577, 2003
BanII	GRGCYC	4 cut(s)	848, 973, 1399, 3176
BauI	CACGAG	1 cut(s)	2032
BbsI	GAAGAC	1 cut(s)	2153
Bbv12I	GWGCWC	5 cut(s)	514, 973, 2373, 2946, 3176
BbvCI	CCTCAGC	2 cut(s)	1335, 2628
BccI	CCATC	7 cut(s)	158, 770, 1205, 1247, 1433, 2044, 2332
BceAI	ACGGC	3 cut(s)	375, 2166, 2461
BcgI	CGANNNNNNTGC	2 cut(s)	2069, 2103
BciT130I	CCWGG	2 cut(s)	941, 2806
BciVI	GTATCC	3 cut(s)	2031, 3308, 3433
BcnI	CCSGG	1 cut(s)	3016
BcoDI	GTCTC	7 cut(s)	146, 1017, 1627, 1798, 1830, 1843, 2909
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	6 cut(s)	372, 524, 741, 1628, 2331, 2922
BfmI	CTRYAG	5 cut(s)	14, 588, 1434, 2289, 3063
BfoI	RGCGCY	1 cut(s)	1458
BfuAI	ACCTGC	1 cut(s)	1682
BfuI	GTATCC	3 cut(s)	2031, 3308, 3433
BglII	AGATCT	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	513
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	3 cut(s)	941, 2806, 3016
Bme18I	GGWCC	3 cut(s)	305, 2113, 3158
BmeRI	GACNNNNNGTC	1 cut(s)	2922
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	6 cut(s)	305, 388, 520, 1354, 2113, 3158
BmrFI	CCNGG	3 cut(s)	941, 2806, 3016
BpiI	GAAGAC	1 cut(s)	2153
BpmI	CTGGAG	2 cut(s)	171, 2788
Bpu10I	CCTNAGC	2 cut(s)	1335, 2628
Bpu1102I	GCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	3 cut(s)	695, 872, 3039
BpuMI	CCSGG	1 cut(s)	3016
Bsa29I	ATCGAT	2 cut(s)	69, 1525
BsaAI	YACGTR	1 cut(s)	2192
BsaHI	GRCGYC	1 cut(s)	718
BsaI	GGTCTC	1 cut(s)	1627
BsaJI	CCNNGG	3 cut(s)	1074, 3345, 3381
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	1140, 1170
Bsc4I	CCNNNNNNNGG	5 cut(s)	714, 1245, 1726, 2013, 2728
Bse1I	ACTGG	8 cut(s)	457, 938, 1099, 1229, 1357, 1762, 2046, 2124
Bse21I	CCTNAGG	1 cut(s)	1349
Bse3DI	GCAATG	5 cut(s)	266, 564, 1713, 2583, 3269
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	941, 2806
BseCI	ATCGAT	2 cut(s)	69, 1525
BseDI	CCNNGG	3 cut(s)	1074, 3345, 3381
BseLI	CCNNNNNNNGG	5 cut(s)	714, 1245, 1726, 2013, 2728
BseMI	GCAATG	5 cut(s)	266, 564, 1713, 2583, 3269
BseMII	CTCAG	9 cut(s)	44, 230, 527, 1326, 1340, 2526, 2619, 2961, 3384
BseNI	ACTGG	8 cut(s)	457, 938, 1099, 1229, 1357, 1762, 2046, 2124
BseRI	GAGGAG	4 cut(s)	487, 871, 981, 3240
BseYI	CCCAGC	3 cut(s)	517, 2060, 2895
BsgI	GTGCAG	2 cut(s)	309, 2628
BshFI	GGCC	7 cut(s)	390, 522, 1356, 1719, 1955, 2527, 3362
BshNI	GGYRCC	4 cut(s)	1070, 1168, 1577, 2003
BshVI	ATCGAT	2 cut(s)	69, 1525
BsiHKAI	GWGCWC	5 cut(s)	514, 973, 2373, 2946, 3176
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	2 cut(s)	74, 3015
BslFI	GGGAC	5 cut(s)	158, 667, 751, 1862, 2077
BslI	CCNNNNNNNGG	5 cut(s)	714, 1245, 1726, 2013, 2728
BsmAI	GTCTC	7 cut(s)	146, 1017, 1627, 1798, 1830, 1843, 2909
BsmFI	GGGAC	5 cut(s)	158, 667, 751, 1862, 2077
BsmI	GAATGC	1 cut(s)	2428
BsnI	GGCC	7 cut(s)	390, 522, 1356, 1719, 1955, 2527, 3362
Bso31I	GGTCTC	1 cut(s)	1627
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	7 cut(s)	514, 848, 973, 1399, 2373, 2946, 3176
Bsp13I	TCCGGA	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	2170
Bsp1720I	GCTNAGC	1 cut(s)	513
Bsp19I	CCATGG	1 cut(s)	3381
BspACI	CCGC	6 cut(s)	64, 1246, 1554, 1793, 2077, 2899
BspANI	GGCC	7 cut(s)	390, 522, 1356, 1719, 1955, 2527, 3362
BspCNI	CTCAG	9 cut(s)	45, 229, 526, 1327, 1341, 2527, 2620, 2960, 3383
BspDI	ATCGAT	2 cut(s)	69, 1525
BspEI	TCCGGA	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	3327
BspMAI	CTGCAG	3 cut(s)	592, 2293, 3067
BspMI	ACCTGC	1 cut(s)	1682
BspPI	GGATC	8 cut(s)	65, 74, 134, 438, 1556, 1569, 2315, 3418
BspT107I	GGYRCC	4 cut(s)	1070, 1168, 1577, 2003
BspTNI	GGTCTC	1 cut(s)	1627
BsrDI	GCAATG	5 cut(s)	266, 564, 1713, 2583, 3269
BsrGI	TGTACA	1 cut(s)	2170
BsrI	ACTGG	8 cut(s)	457, 938, 1099, 1229, 1357, 1762, 2046, 2124
BssECI	CCNNGG	3 cut(s)	1074, 3345, 3381
BssNI	GRCGYC	1 cut(s)	718
BssSI	CACGAG	1 cut(s)	2032
BssT1I	CCWWGG	3 cut(s)	1074, 3345, 3381
Bst2BI	CACGAG	1 cut(s)	2032
Bst2UI	CCWGG	2 cut(s)	941, 2806
Bst6I	CTCTTC	1 cut(s)	2297
BstACI	GRCGYC	1 cut(s)	718
BstAPI	GCANNNNNTGC	4 cut(s)	2288, 2402, 2606, 2618
BstAUI	TGTACA	1 cut(s)	2170
BstBAI	YACGTR	1 cut(s)	2192
BstC8I	GCNNGC	8 cut(s)	328, 442, 2002, 2280, 2407, 2851, 3246, 3360
BstDEI	CTNAG	9 cut(s)	53, 216, 513, 1335, 1349, 2535, 2628, 2947, 3370
BstDSI	CCRYGG	1 cut(s)	3381
BstENI	CCTNNNNNAGG	1 cut(s)	1724
BstH2I	RGCGCY	1 cut(s)	1458
BstHHI	GCGC	4 cut(s)	1457, 1706, 2130, 3414
BstMAI	GTCTC	7 cut(s)	146, 1017, 1627, 1798, 1830, 1843, 2909
BstNI	CCWGG	2 cut(s)	941, 2806
BstNSI	RCATGY	2 cut(s)	1469, 1915
BstSCI	CCNGG	3 cut(s)	939, 2804, 3014
BstSFI	CTRYAG	5 cut(s)	14, 588, 1434, 2289, 3063
BstV2I	GAAGAC	1 cut(s)	2153
BstX2I	RGATCY	5 cut(s)	430, 592, 1561, 2320, 3423
BstXI	CCANNNNNNTGG	1 cut(s)	3352
BstYI	RGATCY	5 cut(s)	430, 592, 1561, 2320, 3423
Bsu15I	ATCGAT	2 cut(s)	69, 1525
Bsu36I	CCTNAGG	1 cut(s)	1349
BsuI	GTATCC	3 cut(s)	2031, 3308, 3433
BsuRI	GGCC	7 cut(s)	390, 522, 1356, 1719, 1955, 2527, 3362
BsuTUI	ATCGAT	2 cut(s)	69, 1525
BtgI	CCRYGG	1 cut(s)	3381
BtsI	GCAGTG	5 cut(s)	246, 973, 1737, 2400, 2663
BveI	ACCTGC	1 cut(s)	1682
Cac8I	GCNNGC	8 cut(s)	328, 442, 2002, 2280, 2407, 2851, 3246, 3360
CaiI	CAGNNNCTG	6 cut(s)	425, 1520, 1817, 2627, 2811, 3074
CciI	TCATGA	1 cut(s)	3327
CfoI	GCGC	4 cut(s)	1457, 1706, 2130, 3414
Cfr13I	GGNCC	6 cut(s)	305, 388, 520, 1354, 2113, 3158
ClaI	ATCGAT	2 cut(s)	69, 1525
CseI	GACGC	2 cut(s)	707, 2842
Csp6I	GTAC	6 cut(s)	213, 1487, 1517, 2171, 2661, 2719
CviQI	GTAC	6 cut(s)	213, 1487, 1517, 2171, 2661, 2719
DdeI	CTNAG	9 cut(s)	53, 216, 513, 1335, 1349, 2535, 2628, 2947, 3370
DrdI	GACNNNNNNGTC	1 cut(s)	679
DriI	GACNNNNNGTC	1 cut(s)	2922
DseDI	GACNNNNNNGTC	1 cut(s)	679
EaeI	YGGCCR	2 cut(s)	1953, 3360
Eam1104I	CTCTTC	1 cut(s)	2297
Eam1105I	GACNNNNNGTC	1 cut(s)	2922
EarI	CTCTTC	1 cut(s)	2297
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	2 cut(s)	971, 3174
Eco130I	CCWWGG	3 cut(s)	1074, 3345, 3381
Eco24I	GRGCYC	4 cut(s)	848, 973, 1399, 3176
Eco31I	GGTCTC	1 cut(s)	1627
Eco47I	GGWCC	3 cut(s)	305, 2113, 3158
Eco47III	AGCGCT	1 cut(s)	1456
Eco53kI	GAGCTC	2 cut(s)	971, 3174
Eco57I	CTGAAG	5 cut(s)	932, 1497, 2616, 2628, 2654
Eco81I	CCTNAGG	1 cut(s)	1349
Eco88I	CYCGRG	1 cut(s)	686
EcoICRI	GAGCTC	2 cut(s)	971, 3174
EcoNI	CCTNNNNNAGG	1 cut(s)	1724
EcoO109I	RGGNCCY	1 cut(s)	3158
EcoRII	CCWGG	2 cut(s)	939, 2804
EcoT14I	CCWWGG	3 cut(s)	1074, 3345, 3381
EcoT22I	ATGCAT	2 cut(s)	2299, 2641
EcoT38I	GRGCYC	4 cut(s)	848, 973, 1399, 3176
ErhI	CCWWGG	3 cut(s)	1074, 3345, 3381
FaqI	GGGAC	5 cut(s)	158, 667, 751, 1862, 2077
FauI	CCCGC	1 cut(s)	1786
FauNDI	CATATG	3 cut(s)	1066, 1588, 2635
FblI	GTMKAC	2 cut(s)	2776, 2967
FriOI	GRGCYC	4 cut(s)	848, 973, 1399, 3176
FspBI	CTAG	6 cut(s)	372, 524, 741, 1628, 2331, 2922
GlaI	GCGC	4 cut(s)	1456, 1705, 2129, 3413
GsaI	CCCAGC	3 cut(s)	521, 2064, 2899
GsuI	CTGGAG	2 cut(s)	171, 2788
HaeII	RGCGCY	1 cut(s)	1458
HaeIII	GGCC	7 cut(s)	390, 522, 1356, 1719, 1955, 2527, 3362
HapII	CCGG	2 cut(s)	74, 3015
HgaI	GACGC	2 cut(s)	707, 2842
HhaI	GCGC	4 cut(s)	1457, 1706, 2130, 3414
Hin1I	GRCGYC	1 cut(s)	718
Hin6I	GCGC	4 cut(s)	1455, 1704, 2128, 3412
HinP1I	GCGC	4 cut(s)	1455, 1704, 2128, 3412
HincII	GTYRAC	3 cut(s)	531, 1471, 2968
HindII	GTYRAC	3 cut(s)	531, 1471, 2968
HindIII	AAGCTT	2 cut(s)	2247, 2380
HpaI	GTTAAC	1 cut(s)	1471
HpaII	CCGG	2 cut(s)	74, 3015
HphI	GGTGA	6 cut(s)	161, 173, 587, 824, 1676, 2474
Hpy166II	GTNNAC	7 cut(s)	531, 1471, 2171, 2443, 2663, 2777, 2968
Hpy8I	GTNNAC	7 cut(s)	531, 1471, 2171, 2443, 2663, 2777, 2968
Hpy99I	CGWCG	2 cut(s)	723, 2712
HpyAV	CCTTC	9 cut(s)	638, 686, 907, 1016, 1730, 1935, 2006, 2050, 3149
HpyCH4IV	ACGT	3 cut(s)	340, 2191, 2553
HpyF3I	CTNAG	9 cut(s)	53, 216, 513, 1335, 1349, 2535, 2628, 2947, 3370
HpySE526I	ACGT	3 cut(s)	340, 2191, 2553
Hsp92I	GRCGYC	1 cut(s)	718
HspAI	GCGC	4 cut(s)	1455, 1704, 2128, 3412
Kpn2I	TCCGGA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	1471
MaeI	CTAG	6 cut(s)	372, 524, 741, 1628, 2331, 2922
MaeII	ACGT	3 cut(s)	340, 2191, 2553
MfeI	CAATTG	2 cut(s)	144, 1788
MflI	RGATCY	5 cut(s)	430, 592, 1561, 2320, 3423
MhlI	GDGCHC	7 cut(s)	514, 848, 973, 1399, 2373, 2946, 3176
MlsI	TGGCCA	2 cut(s)	1955, 3362
MluNI	TGGCCA	2 cut(s)	1955, 3362
MlyI	GAGTC	7 cut(s)	1019, 1301, 2039, 2059, 2795, 3212, 3362
MmeI	TCCRAC	1 cut(s)	1579
Mox20I	TGGCCA	2 cut(s)	1955, 3362
Mph1103I	ATGCAT	2 cut(s)	2299, 2641
MroI	TCCGGA	1 cut(s)	73
MroXI	GAANNNNTTC	3 cut(s)	582, 1026, 2232
MscI	TGGCCA	2 cut(s)	1955, 3362
MslI	CAYNNNNRTG	1 cut(s)	3041
Msp20I	TGGCCA	2 cut(s)	1955, 3362
MspA1I	CMGCKG	7 cut(s)	517, 2209, 2624, 2899, 3005, 3062, 3144
MspI	CCGG	2 cut(s)	74, 3015
MspR9I	CCNGG	3 cut(s)	941, 2806, 3016
MunI	CAATTG	2 cut(s)	144, 1788
Mva1269I	GAATGC	1 cut(s)	2428
MvaI	CCWGG	2 cut(s)	941, 2806
NciI	CCSGG	1 cut(s)	3016
NcoI	CCATGG	1 cut(s)	3381
NdeI	CATATG	3 cut(s)	1066, 1588, 2635
NmuCI	GTSAC	3 cut(s)	355, 1543, 2560
NsiI	ATGCAT	2 cut(s)	2299, 2641
NspI	RCATGY	2 cut(s)	1469, 1915
PaeR7I	CTCGAG	1 cut(s)	686
PagI	TCATGA	1 cut(s)	3327
PciI	ACATGT	2 cut(s)	1465, 1911
PctI	GAATGC	1 cut(s)	2428
PdmI	GAANNNNTTC	3 cut(s)	582, 1026, 2232
PfeI	GAWTC	5 cut(s)	1042, 1814, 2390, 2683, 3116
PfoI	TCCNGGA	1 cut(s)	2804
PleI	GAGTC	7 cut(s)	1018, 1301, 2039, 2059, 2795, 3211, 3362
PpsI	GAGTC	7 cut(s)	1018, 1301, 2039, 2059, 2795, 3211, 3362
Ppu21I	YACGTR	1 cut(s)	2192
PpuMI	RGGWCCY	1 cut(s)	3158
PscI	ACATGT	2 cut(s)	1465, 1911
PsiI	TTATAA	2 cut(s)	449, 3288
Psp124BI	GAGCTC	2 cut(s)	973, 3176
Psp5II	RGGWCCY	1 cut(s)	3158
Psp6I	CCWGG	2 cut(s)	939, 2804
PspFI	CCCAGC	3 cut(s)	517, 2060, 2895
PspGI	CCWGG	2 cut(s)	939, 2804
PspPI	GGNCC	6 cut(s)	305, 388, 520, 1354, 2113, 3158
PspPPI	RGGWCCY	1 cut(s)	3158
PspXI	VCTCGAGB	1 cut(s)	686
PstI	CTGCAG	3 cut(s)	592, 2293, 3067
PstNI	CAGNNNCTG	6 cut(s)	425, 1520, 1817, 2627, 2811, 3074
PsuI	RGATCY	5 cut(s)	430, 592, 1561, 2320, 3423
PvuII	CAGCTG	6 cut(s)	517, 2209, 2624, 3005, 3062, 3144
RsaI	GTAC	6 cut(s)	214, 1488, 1518, 2172, 2662, 2720
RsaNI	GTAC	6 cut(s)	213, 1487, 1517, 2171, 2661, 2719
RseI	CAYNNNNRTG	1 cut(s)	3041
SacI	GAGCTC	2 cut(s)	973, 3176
SalI	GTCGAC	1 cut(s)	2966
Sau96I	GGNCC	6 cut(s)	305, 388, 520, 1354, 2113, 3158
ScaI	AGTACT	1 cut(s)	214
SchI	GAGTC	7 cut(s)	1019, 1301, 2039, 2059, 2795, 3212, 3362
ScrFI	CCNGG	3 cut(s)	941, 2806, 3016
SduI	GDGCHC	7 cut(s)	514, 848, 973, 1399, 2373, 2946, 3176
SfcI	CTRYAG	5 cut(s)	14, 588, 1434, 2289, 3063
Sfr274I	CTCGAG	1 cut(s)	686
SinI	GGWCC	3 cut(s)	305, 2113, 3158
SlaI	CTCGAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	3041
SmlI	CTYRAG	4 cut(s)	686, 710, 851, 3054
SmoI	CTYRAG	4 cut(s)	686, 710, 851, 3054
SpeI	ACTAGT	1 cut(s)	740
SsiI	CCGC	6 cut(s)	64, 1246, 1554, 1793, 2077, 2899
SspI	AATATT	1 cut(s)	2860
SspMI	CTAG	6 cut(s)	372, 524, 741, 1628, 2331, 2922
SstI	GAGCTC	2 cut(s)	973, 3176
StyD4I	CCNGG	3 cut(s)	939, 2804, 3014
StyI	CCWWGG	3 cut(s)	1074, 3345, 3381
TaiI	ACGT	3 cut(s)	343, 2194, 2556
TatI	WGTACW	3 cut(s)	212, 2170, 2660
TauI	GCSGC	2 cut(s)	1249, 2080
TfiI	GAWTC	5 cut(s)	1042, 1814, 2390, 2683, 3116
TseFI	GTSAC	3 cut(s)	355, 1543, 2560
Tsp45I	GTSAC	3 cut(s)	355, 1543, 2560
TspGWI	ACGGA	2 cut(s)	2126, 3416
VpaK11BI	GGWCC	3 cut(s)	305, 2113, 3158
XagI	CCTNNNNNAGG	1 cut(s)	1724
XapI	RAATTY	5 cut(s)	1032, 1202, 1283, 2473, 2932
XceI	RCATGY	2 cut(s)	1469, 1915
XhoI	CTCGAG	1 cut(s)	686
XmiI	GTMKAC	2 cut(s)	2776, 2967
XmnI	GAANNNNTTC	3 cut(s)	582, 1026, 2232
XspI	CTAG	6 cut(s)	372, 524, 741, 1628, 2331, 2922
ZrmI	AGTACT	1 cut(s)	214
Zsp2I	ATGCAT	2 cut(s)	2299, 2641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.