Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Forward (+)

7599198 .. 7608539

Gene Structure 9342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5745 bp

ATGGATGGAGACGAGAAGAGGTCGGGTTTTAAGAAGAGATCGAAGTTAATGGAGGTTAATCACAATTCGGATGACGATGAGCCGATTGGGTCACTGCTGAAGAAGAGGCAGCGAAACCCTAAGAAGGTTAAGCCGGGGTTGGAGGGCGAAAGGGGCAAGAAGGTTGAGGCTGGAGAGGAGGATTTGGGGGGACTGGATGATACCTTGGCAAGTTTTAGGAAGAAGCTCAAGGGTCCTAAGAGGGATTCTGGGGCCGGAACCGGGAGGGGAAGGAGTTCTAGTTTGGATGTTGTGCAGTCTTCGGATCAGGATGGGGGGTCGGATGCAAAATCAGTGTTGAGGAGTATGGAGAAAGGTCCGGTCATCGATGATGATGGAACTAATGTGATTATGGATGTAGAGGTGGAAAACAGGCTTAAGGGAAAGGGAAAGAGACCCAACGTTTCAGGTCTGGTATCTGGGGAGGGTTCTAATAGCTCTTTGGATCATCATTCGCAAGATTCGTTATTGGCATTTTTTCAGAAGGCACAGTCTGGTGTTAGTAAGAAGTCTCATCCCTCTTCGAGTCTTAGAGAGAAGAGTGGTTCTTTGGATTTGGAGGATGGACTGAGCCCTAGTTCAGAAGGTGTTGGAGGAAATAGCATGCCTGTGGCTGTGCAGAGACATAGTTCTGTTTCAAAACTGAACCAGGAAAATCCAAGATTTGAAGATAGTTTGCTGTTCGATTCTGGTTTTAATTTGTTGGATTCAGTCAACGATCAGTATAAGATAGAGGAACAAAACGGATTTTGCCAAGATTCTGACTGCAACAGACAGAATCAAGAGAGATCTCAAGGACTTTATTCTATTCCAGATGACATGACGAGACTTGAGGATAGAAAGAATGAACCCACAGTGGATCATTCTGGTTTAAATGTTCAAGAGGAACTATGTAGCTTGGATAGATCCAATGGCGGAGATAGCCAGCACTTACAGAAAATTCGAACTTTTGAGAACCGACTGAGGCACTGCTCTGTGACAAACTCAAACACTCTAACGATTTGTGAACAGAAGGGGGAAATGCTTGGGGTCGGTACCAGTGACTCCAAAGGGGGCTTTCCTGATGCTTTGTCCATTCAGTCCACGGATGTTCTAGCTAGATGTACATCAGGTGCAGACTGTGAAATATCTTATTCAACTGGAAAAGAAATACCGATGCCTCAGTGTAATGATGAGTTACTGAACAAATCTAACTTTGCCCCGGATACACTAAAGAGGGAAGAAACTCCTTGTAATCGTATAATTGCTTACACTGAGGGGCAAGATCTTGCTTCCAGTCCTTTGCATGAAGAGAATGCCATGATAACTGATTGTCAGATATCTTCAATCCGGGTGAGTCATCAAGCAAAAGCCTTGCAAACTGCCTCAGTTCAGAAGGGGAGCTATTGTGAAGATTTGTCTTCTGATGAAGCATCAAAAGAGAGAAATATTCCAAAACATGATTATATTACTAGTAATGAGGAGGTTGATGGAGCTTCTCCTCCTTTATATGCAACAGTAGATGAGAATGAGAGTTTCCCAGAAGACACAGTATCTCTACCTGATATTGAAAACAGAGACGACGGTAAGCTATCTGCTCTCCAGCGCATACCACGGAATGCTAGGAAACGCAGGCATGGAGACATGGCTTATGAGGGGGATGTTGATTGGGAGATCTCAGTAACTGATCAAGGATTGGATAGTGACAATTCAATTAGAGCGAGAGTGAAGTTTGATTCCTCTTCAAGTATTGGCACAGAAGCTGAAAGTGGTGGGGCTGCAGCAGTGTCTGCTGGTCTAAAAGCTCACGCAGTTGGTCCTGTTGAGAAGATTAAATTCAAGGAGATCTTGAAGCGCAGAGGCGGGCTTCAGGATTACTTGGAATGCAGGAATCAGATCTTAGCTCTGTGGAGCAAAGATGTTAGTCGAATTTTGCCTCTCACCGACTGTGGGGTCACAGAGCGTGCTTGTGTGAATGAACCTGGGCGTGCCTCCCTAATTAGGGATATTTATGCATTTCTAGATCTCAGTGGTTATATAAATGTTGGAATTGCTGCCGAGAAGGATAAAGCAGAACCTGGTTCTAAGCATGACTATAAAATAGTCAGAGAAAAACCTTTTGAGGAAATTTCTGGGGTTTCAATTGCTGACTCAGAGGATGGGGTTTCCTTTATCATTGGCCAGGTTAAGAATTCAAAAACTTCCACCGATGCTAAGAATGGAATTACATTTAATAGCGAAAACTTGACTGAGGGAGCCACAAAAGACAATGGGCATGTTGAGGCAGTGGCATTGGAATTATTTGATGCGAAACATCCTGAAGAATGCCAAACTGATTACCTGGAAAACTGTAGTGCTGATGCAAGGTTCCAAAGTCGATTGGACAATATGGATGTTTCTAGTAGTGATCCCTCTGGTGAGACATTGGATGGTGGAGTCATCCCTGTTGTAGCTCCAGAGATAAAGAATGAATCACAGAGTATTCAGTCAACACCACATGATCATGTACCGAGTAATGATACCCTGCAATGTGGTCCAGAAGTCAGAAAGGAGATCATTGTCATAGGTGCTGGTCCTGCTGGCTTAACTGCTGCACGCCACTTGCAGCGTCAGGGGTTTTCAGTCAATGTACTTGAAGCTAGGAGTCGAATAGGAGGTCGTGTTTATACAGACCGGTCATCTCTATCAGTTGCAGTGGATCTTGGTGCTAGCATTATTACTGGTGTCGAGGCTGATTGGGCAACTGAAAGAAGACCCGATCCCTCCTCATTGGTTTGTGCTCAGTTGGGCCTTGAGTTGACTGTATTAAACAGTGATTGCCCTCTTTATGATATTGAAACAGGTCAAAAAGTTCCTGCAGATCTGGATGAGGCATTGGAAGCAGAGTTCAACAGCCTTCTTGATGACATGGTATTGCTTGTAGCACAGAAGGGAGAACGTGCAGCAAGAATGTCTCTTGAGGAAGGTTTTGAATATGTCCTTAAGAGGCGACGTATGGCACAATCAGGGAGTGCTAAAGAAAAAGAATTGCATGGTTCAAGGGATGGTTTGATTAATGCTAGAACAAATATTGATGGTAGAGTTGCTGATAAAAGTTATTGTAAGCAAGAGCTCTTGAGTCCTCTTGAGAGGAGGGTTATGGATTGGCATTTTGCTAATTTGGAGTATGGTTGTGCAGCTCCGCTTAAGGAGGTATCTCTACCCCATTGGAACCAAGATGATGTATATGGTGGCTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGCACTGTTGTTGAGTCTCTTGGAGAAGGACTGCGCATTCACTTGAATCATGTAGTCACTGATATTTCATATGGCGCTGAGGATGGTGAATTGAATAATAACCAGTGTAACAAAGTCAAAGTTTCCACATCAAATGGGAGTATCTTTTGTGGAGATGCAGTCTTGATTACAGTGCCTCTTGGGTGTTTAAAAGCAGAAACCATAAAGTTTTCTCCACCATTGCCCCAGTGGAAACATTCTTCTATCACGCGGCTTGGATTTGGCGTTCTTAATAAAGTAGTTTTGGAATTTCCAGATGTCTTTTGGGATGACACCGTGGACTACTTTGGAGCAACTGCTGAAGAAACAGACGTGAGGGGTCAGTGCTTTATGTTCTGGAATATCAAGAAAACTGTTGGGGCTCCCGTTCTTATAGCTTTAGTGGTTGGTAAGGCAGCTATAGAAGGCCAAAATATGAGCTCTTCTGATCATGTTAACCATGCATTAGTGGCTCTCCGTAAATTGTTTGGAGAGGCGTCAGTACCTGATCCAGTTGCATCAGTTGTGACAGATTGGGGCAGGGATCCTTTCAGCTATGGTGCATACTCATACGTTGCTGTCGGAGCTTCTGGAAAAGACTATGACATACTAGGGAGACCTGTTGATAACTGCCTATTTTTTGCTGGTGAAGCTACCTGCAAGGAGCATCCCGATACTGTTGGTGGTGCAATGATGAGTGGGCTTCGAGAGTCAGTGCGTATAATTGACATACTGACAACTGGAAATGATTACACAGCAGAAGCAGAAGCAATGGAGTCCATACAGAGACAGTCAGCCTCTGAAAAGGATGAAGTTTGGGACATAACAAGGAGACTTGATGCAGTTGAACTTTCCGATGTCCTTTACAAGAACAGGGAAGCCTTACTCCAGGACTTGTTCTTTAGTGCAAAAACCACCAAAGGAAGGTTGCATCTGGCCAAAGAGTTATTGAGTCTTCCTGCTGAAACGTTGAAGTCCTTTGCTGGCACCAAAGAGGGGCTAACCACACTTAACTCATGGATACTGGACTCAATGGGGAAAGCGGGGACTCAACTCTTGCGGCATTGTGTTCGTCTTCTTGTTCTTGTGTCAACAGACCTACTGGCTGTGCGCTTGTCTGGCATTGGGAAAACCGTAAGAGAGAAAGTTTGTGTACATACTAGCCGTGATATACGTGCCATTGCAAGTCAGCTAGTTAGTGTGTGGCTTGAAGTCTTCCGCAGAGAAAAAGCTTCTAATGGAGGATTGAAATTGTCAAGGCAAGCCAATGGTGTAGATTCATTGAAGAGAAAAACAGTCAGAGACCCATCTTTTGGAAAGCCGCCACTACACATGTACCATGGTGCTTTTGAGCACAAAGGAAGTTTACAGGATTCTGCATCCACGGGAAGCCAATTGCCTCCGAATCCAAATGTGAAGAAATTGAATGGCAAAGCCATTAAACTTGAAACAGCAAATTCCTCAAGATTTGGAGGTTCAACAGGCAGACCGCATAATGATGACTTTGCTATGACTGAAGAAGAAAGAGCTGCCATTGCTGCTGCTGAAGCAGCGCGAGCTGCAGCACTTGCAGCTGCTAAGGCATATGCATCTTCAGAAGCCAAGAGCAGTTCGTTGCTTCAGCTTCCTAAGATTCCCTCGTTTCATAAATTTGCTCGACGGGAGCAGTACGCTCAAATGGATGAGTATGATTTTAGGAGGAAGTGGTCTGGTGGTGTTTTGGGTAGAGAAGATTGCATATCTGAAATTGACTCTAGGAACTGCAAAGTAAGGAACTGGTCTGTTGATTTCTCCGCTGCTTGTGTCAATCTTGACAGTTCAAGAAGGTCAGTTGATAACCTCTCAGAGCGGAGCCATCCCAATGAGATCGCTAGTCAGTTGAATTTCCGAGAGCACTCAGGGGAGAGTGCTGCTGTTGACAGTAGTATCTATACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGGGTAAAAGACTATCATGCCATTGAGATGTGGCAATCTCAAGCAGCGGCAGCTGACCCTGATTTCTTCCATCCTGATCCGTATGTAAAGGATGAGGAAGATTCAAACACAACTTCTAAAGGACTAAGCTGGAAGCATGAAGGACTAGTAAATGAGAGCTCTGTTTCACAAGTTACTGTAAACAAGGGGTCATCGAAAAATCATCGTCGAGGAGCAGACCAAATTAAACATGCAGTTGTTGATTATGTGGCATCATTGCTTATGCCCCTCTATAAAGCTAAAAAGATTGACAGAGAGGGATACAAGTCAATCATGAAGAAAAGTGCTACCAAGGTCATGGAGCTAGCCACTGATGCAGAGAAAGCAATGGCTGTATCCGAGTTTCTTGATTTCAAGCGCAAGAACAAGATTCGTGCTTTTGTGGATAAATTGATTGAGAAGCACATGGCAGTGAAGCCTGTTGTGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

1914

Amino Acids

209.18

Weight (kDa)

5.54

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	609 - 687	1.3e-12	SWIRM domain
Thi4	PF01946	856 - 894	7.4e-06	Thi4 family
DAO	PF01266	858 - 892	2.2e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	860 - 916	3.9e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	866 - 1344	1.1e-86	Flavin containing amine oxidoreductase
SCAF11-like_C	PF23030	1831 - 1885	4.9e-06	SCAF11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1970
Acc16I	TGCGCA	1 cut(s)	3323
Acc36I	ACCTGC	1 cut(s)	3971
Acc65I	GGTACC	1 cut(s)	1073
AccB1I	GGYRCC	2 cut(s)	1073, 4292
AccB7I	CCANNNNNTGG	1 cut(s)	4619
AccBSI	CCGCTC	1 cut(s)	5155
AccII	CGCG	2 cut(s)	3538, 4861
AclI	AACGTT	2 cut(s)	441, 4274
AcoI	YGGCCR	2 cut(s)	2197, 4242
AcsI	RAATTY	9 cut(s)	978, 1853, 1947, 2145, 2209, 3575, 4762, 4955, 5188
AcuI	CTGAAG	8 cut(s)	119, 1871, 2358, 3648, 4842, 4872, 4884, 4910
AcyI	GRCGYC	1 cut(s)	3803
AfaI	GTAC	8 cut(s)	1075, 1144, 2526, 2649, 3810, 4461, 4643, 4976
AfiI	CCNNNNNNNGG	8 cut(s)	124, 261, 1968, 2019, 2020, 4230, 4302, 4619
AflII	CTTAAG	3 cut(s)	416, 2999, 3203
AflIII	ACRYGT	1 cut(s)	4638
AgeI	ACCGGT	1 cut(s)	2691
AhlI	ACTAGT	2 cut(s)	1490, 5416
AjiI	CACGTC	1 cut(s)	3640
AjnI	CCWGG	6 cut(s)	687, 1999, 2095, 2199, 2358, 4194
AloI	GAACNNNNNNTCC	4 cut(s)	2888, 2920, 3537, 3569
Alw21I	GWGCWC	7 cut(s)	2800, 3132, 3265, 3749, 4662, 5202, 5432
AlwNI	CAGNNNCTG	6 cut(s)	1703, 1781, 1808, 2096, 3812, 4106
AoxI	GGCC	5 cut(s)	252, 2197, 2806, 3733, 4242
ApoI	RAATTY	9 cut(s)	978, 1853, 1947, 2145, 2209, 3575, 4762, 4955, 5188
ArsI	GACNNNNNNTTYG	4 cut(s)	2659, 2691, 4601, 4633
AseI	ATTAAT	1 cut(s)	3072
AsiGI	ACCGGT	1 cut(s)	2691
Asp700I	GAANNNNTTC	1 cut(s)	274
Asp718I	GGTACC	1 cut(s)	1073
AspLEI	GCGC	7 cut(s)	1626, 1875, 3324, 3365, 4419, 4861, 5670
AspS9I	GGNCC	7 cut(s)	233, 252, 356, 1835, 2552, 2591, 2806
AsuC2I	CCSGG	4 cut(s)	135, 262, 1241, 1370
AsuHPI	GGTGA	5 cut(s)	1384, 1951, 2447, 3386, 3965
AsuII	TTCGAA	1 cut(s)	982
AsuNHI	GCTAGC	2 cut(s)	2726, 5614
AvaII	GGWCC	5 cut(s)	233, 356, 1835, 2552, 2591
BaeI	ACNNNNGTAYC	4 cut(s)	4625, 4658, 5215, 5248
BalI	TGGCCA	2 cut(s)	2199, 4244
BamHI	GGATCC	1 cut(s)	3850
BanI	GGYRCC	2 cut(s)	1073, 4292
BanII	GRGCYC	6 cut(s)	614, 3132, 3265, 3691, 3749, 5432
BbsI	GAAGAC	7 cut(s)	291, 1431, 1569, 2776, 4253, 4373, 4513
Bbv12I	GWGCWC	7 cut(s)	2800, 3132, 3265, 3749, 4662, 5202, 5432
BbvCI	CCTCAGC	1 cut(s)	3366
BceAI	ACGGC	1 cut(s)	4455
BcgI	CGANNNNNNTGC	2 cut(s)	4358, 4392
BciT130I	CCWGG	6 cut(s)	689, 2001, 2097, 2201, 2360, 4196
BciVI	GTATCC	4 cut(s)	1237, 4320, 5564, 5656
BclI	TGATCA	3 cut(s)	1705, 2518, 3754
BcnI	CCSGG	4 cut(s)	135, 262, 1241, 1370
BcuI	ACTAGT	2 cut(s)	1490, 5416
BfmI	CTRYAG	5 cut(s)	1797, 2368, 2874, 3726, 4866
BfoI	RGCGCY	1 cut(s)	3366
BfrI	CTTAAG	3 cut(s)	416, 2999, 3203
BfuAI	ACCTGC	1 cut(s)	3971
BfuI	GTATCC	4 cut(s)	1237, 4320, 5564, 5656
BglII	AGATCT	7 cut(s)	827, 1303, 1692, 1863, 1914, 2041, 2878
Bme18I	GGWCC	5 cut(s)	233, 356, 1835, 2552, 2591
BmgBI	CACGTC	1 cut(s)	3640
BmgT120I	GGNCC	7 cut(s)	233, 252, 356, 1835, 2552, 2591, 2806
BmrI	ACTGGG	1 cut(s)	3508
BmtI	GCTAGC	2 cut(s)	2730, 5618
BmuI	ACTGGG	1 cut(s)	3508
BpiI	GAAGAC	7 cut(s)	291, 1431, 1569, 2776, 4253, 4373, 4513
BpmI	CTGGAG	4 cut(s)	192, 1604, 2457, 4178
Bpu10I	CCTNAGC	2 cut(s)	3366, 4884
Bpu14I	TTCGAA	1 cut(s)	982
BpuEI	CTTGAG	9 cut(s)	212, 816, 890, 2831, 2996, 3154, 3164, 4753, 5295
BpuMI	CCSGG	4 cut(s)	135, 262, 1241, 1370
Bsa29I	ATCGAT	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	4481
BsaBI	GATNNNNATC	1 cut(s)	1144
BsaHI	GRCGYC	1 cut(s)	3803
BsaI	GGTCTC	3 cut(s)	427, 3916, 4602
BsaWI	WCCGGW	2 cut(s)	358, 2691
BsaXI	ACNNNNNCTCC	8 cut(s)	265, 295, 1411, 1441, 2664, 2694, 3432, 3462
Bsc4I	CCNNNNNNNGG	8 cut(s)	124, 261, 1968, 2019, 2020, 4230, 4302, 4619
Bse118I	RCCGGY	1 cut(s)	2691
Bse3DI	GCAATG	8 cut(s)	2552, 3506, 4002, 4083, 4485, 4839, 5525, 5643
Bse8I	GATNNNNATC	1 cut(s)	1144
BseBI	CCWGG	6 cut(s)	689, 2001, 2097, 2201, 2360, 4196
BseCI	ATCGAT	1 cut(s)	366
BseJI	GATNNNNATC	1 cut(s)	1144
BseLI	CCNNNNNNNGG	8 cut(s)	124, 261, 1968, 2019, 2020, 4230, 4302, 4619
BseMI	GCAATG	8 cut(s)	2552, 3506, 4002, 4083, 4485, 4839, 5525, 5643
BseRI	GAGGAG	7 cut(s)	191, 355, 1509, 1514, 2773, 3163, 5496
BsgI	GTGCAG	6 cut(s)	314, 677, 1173, 2595, 2979, 3213
Bsh1236I	CGCG	2 cut(s)	3538, 4861
BshFI	GGCC	5 cut(s)	254, 2199, 2808, 3735, 4244
BshNI	GGYRCC	2 cut(s)	1073, 4292
BshTI	ACCGGT	1 cut(s)	2691
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	7 cut(s)	2800, 3132, 3265, 3749, 4662, 5202, 5432
BsiSI	CCGG	7 cut(s)	134, 255, 261, 359, 1241, 1369, 2692
BslFI	GGGAC	3 cut(s)	204, 4139, 4366
BslI	CCNNNNNNNGG	8 cut(s)	124, 261, 1968, 2019, 2020, 4230, 4302, 4619
BsmBI	CGTCTC	2 cut(s)	3, 1590
BsmFI	GGGAC	3 cut(s)	204, 4139, 4366
BsmI	GAATGC	5 cut(s)	1339, 1642, 1907, 2348, 3324
BsnI	GGCC	5 cut(s)	254, 2199, 2808, 3735, 4244
Bso31I	GGTCTC	3 cut(s)	427, 3916, 4602
Bsp119I	TTCGAA	1 cut(s)	982
Bsp1286I	GDGCHC	9 cut(s)	614, 2800, 3132, 3265, 3691, 3749, 4662, 5202, 5432
Bsp1407I	TGTACA	2 cut(s)	1142, 4459
Bsp19I	CCATGG	1 cut(s)	4645
BspANI	GGCC	5 cut(s)	254, 2199, 2808, 3735, 4244
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	2 cut(s)	3538, 4861
BspHI	TCATGA	1 cut(s)	5583
BspMAI	CTGCAG	3 cut(s)	1801, 2878, 4870
BspMI	ACCTGC	1 cut(s)	3971
BspOI	GCTAGC	2 cut(s)	2730, 5618
BspQI	GCTCTTC	1 cut(s)	3754
BspT104I	TTCGAA	1 cut(s)	982
BspT107I	GGYRCC	2 cut(s)	1073, 4292
BspTI	CTTAAG	3 cut(s)	416, 2999, 3203
BspTNI	GGTCTC	3 cut(s)	427, 3916, 4602
BsrBI	CCGCTC	1 cut(s)	5155
BsrDI	GCAATG	8 cut(s)	2552, 3506, 4002, 4083, 4485, 4839, 5525, 5643
BsrFI	RCCGGY	1 cut(s)	2691
BsrGI	TGTACA	2 cut(s)	1142, 4459
BssAI	RCCGGY	1 cut(s)	2691
BssNI	GRCGYC	1 cut(s)	3803
BssT1I	CCWWGG	3 cut(s)	204, 4645, 5601
Bst2UI	CCWGG	6 cut(s)	689, 2001, 2097, 2201, 2360, 4196
Bst6I	CTCTTC	9 cut(s)	11, 29, 98, 565, 572, 1323, 1765, 3754, 4586
BstACI	GRCGYC	1 cut(s)	3803
BstAFI	CTTAAG	3 cut(s)	416, 2999, 3203
BstAPI	GCANNNNNTGC	2 cut(s)	1808, 4874
BstAUI	TGTACA	2 cut(s)	1142, 4459
BstBAI	YACGTR	1 cut(s)	4481
BstBI	TTCGAA	1 cut(s)	982
BstDSI	CCRYGG	5 cut(s)	1122, 1631, 3603, 4645, 4689
BstFNI	CGCG	2 cut(s)	3538, 4861
BstH2I	RGCGCY	1 cut(s)	3366
BstHHI	GCGC	7 cut(s)	1626, 1875, 3324, 3365, 4419, 4861, 5670
BstNI	CCWGG	6 cut(s)	689, 2001, 2097, 2201, 2360, 4196
BstNSI	RCATGY	4 cut(s)	646, 2297, 4642, 5504
BstSFI	CTRYAG	5 cut(s)	1797, 2368, 2874, 3726, 4866
BstUI	CGCG	2 cut(s)	3538, 4861
BstV2I	GAAGAC	7 cut(s)	291, 1431, 1569, 2776, 4253, 4373, 4513
BstXI	CCANNNNNNTGG	1 cut(s)	5608
Bsu15I	ATCGAT	1 cut(s)	366
BsuI	GTATCC	4 cut(s)	1237, 4320, 5564, 5656
BsuRI	GGCC	5 cut(s)	254, 2199, 2808, 3735, 4244
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	5 cut(s)	1122, 1631, 3603, 4645, 4689
BtrI	CACGTC	1 cut(s)	3640
BtsI	GCAGTG	6 cut(s)	92, 1006, 1809, 2310, 2718, 5727
BveI	ACCTGC	1 cut(s)	3971
CaiI	CAGNNNCTG	6 cut(s)	1703, 1781, 1808, 2096, 3812, 4106
CciI	TCATGA	1 cut(s)	5583
CfoI	GCGC	7 cut(s)	1626, 1875, 3324, 3365, 4419, 4861, 5670
Cfr10I	RCCGGY	1 cut(s)	2691
Cfr13I	GGNCC	7 cut(s)	233, 252, 356, 1835, 2552, 2591, 2806
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	2 cut(s)	2615, 3792
CsiI	ACCWGGT	1 cut(s)	2095
Csp6I	GTAC	8 cut(s)	1074, 1143, 2525, 2648, 3809, 4460, 4642, 4975
CspAI	ACCGGT	1 cut(s)	2691
CviQI	GTAC	8 cut(s)	1074, 1143, 2525, 2648, 3809, 4460, 4642, 4975
DraI	TTTAAA	2 cut(s)	912, 3477
DrdI	GACNNNNNNGTC	1 cut(s)	1970
DseDI	GACNNNNNNGTC	1 cut(s)	1970
EaeI	YGGCCR	2 cut(s)	2197, 4242
Eam1104I	CTCTTC	9 cut(s)	11, 29, 98, 565, 572, 1323, 1765, 3754, 4586
EarI	CTCTTC	9 cut(s)	11, 29, 98, 565, 572, 1323, 1765, 3754, 4586
EciI	GGCGGA	1 cut(s)	969
Ecl136II	GAGCTC	4 cut(s)	3130, 3263, 3747, 5430
Eco130I	CCWWGG	3 cut(s)	204, 4645, 5601
Eco24I	GRGCYC	6 cut(s)	614, 3132, 3265, 3691, 3749, 5432
Eco31I	GGTCTC	3 cut(s)	427, 3916, 4602
Eco32I	GATATC	1 cut(s)	1359
Eco47I	GGWCC	5 cut(s)	233, 356, 1835, 2552, 2591
Eco53kI	GAGCTC	4 cut(s)	3130, 3263, 3747, 5430
Eco57I	CTGAAG	8 cut(s)	119, 1871, 2358, 3648, 4842, 4872, 4884, 4910
EcoICRI	GAGCTC	4 cut(s)	3130, 3263, 3747, 5430
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	2209
EcoRII	CCWGG	6 cut(s)	687, 1999, 2095, 2199, 2358, 4194
EcoRV	GATATC	1 cut(s)	1359
EcoT14I	CCWWGG	3 cut(s)	204, 4645, 5601
EcoT22I	ATGCAT	3 cut(s)	2035, 3772, 4897
EcoT38I	GRGCYC	6 cut(s)	614, 3132, 3265, 3691, 3749, 5432
ErhI	CCWWGG	3 cut(s)	204, 4645, 5601
Esp3I	CGTCTC	2 cut(s)	3, 1590
FalI	AAGNNNNNCTT	2 cut(s)	1850, 1882
FaqI	GGGAC	3 cut(s)	204, 4139, 4366
FauI	CCCGC	2 cut(s)	1874, 4342
FauNDI	CATATG	2 cut(s)	3358, 4891
FbaI	TGATCA	3 cut(s)	1705, 2518, 3754
FriOI	GRGCYC	6 cut(s)	614, 3132, 3265, 3691, 3749, 5432
FspI	TGCGCA	1 cut(s)	3323
GlaI	GCGC	7 cut(s)	1625, 1874, 3323, 3364, 4418, 4860, 5669
GsuI	CTGGAG	4 cut(s)	192, 1604, 2457, 4178
HaeII	RGCGCY	1 cut(s)	3366
HaeIII	GGCC	5 cut(s)	254, 2199, 2808, 3735, 4244
HapII	CCGG	7 cut(s)	134, 255, 261, 359, 1241, 1369, 2692
HgaI	GACGC	2 cut(s)	2615, 3792
HhaI	GCGC	7 cut(s)	1626, 1875, 3324, 3365, 4419, 4861, 5670
Hin1I	GRCGYC	1 cut(s)	3803
Hin6I	GCGC	7 cut(s)	1624, 1873, 3322, 3363, 4417, 4859, 5668
HinP1I	GCGC	7 cut(s)	1624, 1873, 3322, 3363, 4417, 4859, 5668
HincII	GTYRAC	6 cut(s)	754, 2508, 2817, 3763, 4398, 5224
HindII	GTYRAC	6 cut(s)	754, 2508, 2817, 3763, 4398, 5224
HindIII	AAGCTT	1 cut(s)	4536
HpaI	GTTAAC	1 cut(s)	3763
HpaII	CCGG	7 cut(s)	134, 255, 261, 359, 1241, 1369, 2692
HphI	GGTGA	5 cut(s)	1384, 1951, 2447, 3386, 3965
Hpy99I	CGWCG	4 cut(s)	1604, 3012, 4968, 5481
HpyCH4IV	ACGT	7 cut(s)	441, 2956, 3010, 3639, 3879, 4274, 4480
HpySE526I	ACGT	7 cut(s)	441, 2956, 3010, 3639, 3879, 4274, 4480
Hsp92I	GRCGYC	1 cut(s)	3803
HspAI	GCGC	7 cut(s)	1624, 1873, 3322, 3363, 4417, 4859, 5668
KpnI	GGTACC	1 cut(s)	1077
Ksp22I	TGATCA	3 cut(s)	1705, 2518, 3754
KspAI	GTTAAC	1 cut(s)	3763
LguI	GCTCTTC	1 cut(s)	3754
MabI	ACCWGGT	1 cut(s)	2095
MaeII	ACGT	7 cut(s)	441, 2956, 3010, 3639, 3879, 4274, 4480
MbiI	CCGCTC	1 cut(s)	5155
MfeI	CAATTG	2 cut(s)	2160, 4700
MhlI	GDGCHC	9 cut(s)	614, 2800, 3132, 3265, 3691, 3749, 4662, 5202, 5432
MlsI	TGGCCA	2 cut(s)	2199, 4244
MluNI	TGGCCA	2 cut(s)	2199, 4244
MmeI	TCCRAC	6 cut(s)	120, 300, 610, 723, 2044, 3868
Mox20I	TGGCCA	2 cut(s)	2199, 4244
Mph1103I	ATGCAT	3 cut(s)	2035, 3772, 4897
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	2 cut(s)	2199, 4244
MslI	CAYNNNNRTG	6 cut(s)	647, 2520, 4803, 5166, 5297, 5720
Msp20I	TGGCCA	2 cut(s)	2199, 4244
MspA1I	CMGCKG	5 cut(s)	4880, 5102, 5261, 5318, 5324
MspCI	CTTAAG	3 cut(s)	416, 2999, 3203
MspI	CCGG	7 cut(s)	134, 255, 261, 359, 1241, 1369, 2692
MunI	CAATTG	2 cut(s)	2160, 4700
Mva1269I	GAATGC	5 cut(s)	1339, 1642, 1907, 2348, 3324
MvaI	CCWGG	6 cut(s)	689, 2001, 2097, 2201, 2360, 4196
MvnI	CGCG	2 cut(s)	3538, 4861
NciI	CCSGG	4 cut(s)	135, 262, 1241, 1370
NcoI	CCATGG	1 cut(s)	4645
NdeI	CATATG	2 cut(s)	3358, 4891
NheI	GCTAGC	2 cut(s)	2726, 5614
NmeAIII	GCCGAG	1 cut(s)	2101
NmuCI	GTSAC	7 cut(s)	90, 1015, 1079, 1721, 1972, 3343, 3832
NsbI	TGCGCA	1 cut(s)	3323
NsiI	ATGCAT	3 cut(s)	2035, 3772, 4897
NspI	RCATGY	4 cut(s)	646, 2297, 4642, 5504
NspV	TTCGAA	1 cut(s)	982
PaeI	GCATGC	1 cut(s)	646
PagI	TCATGA	1 cut(s)	5583
PciI	ACATGT	1 cut(s)	4638
PciSI	GCTCTTC	1 cut(s)	3754
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PctI	GAATGC	5 cut(s)	1339, 1642, 1907, 2348, 3324
PdmI	GAANNNNTTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	4619
PfoI	TCCNGGA	1 cut(s)	4194
PinAI	ACCGGT	1 cut(s)	2691
Ppu21I	YACGTR	1 cut(s)	4481
PpuMI	RGGWCCY	1 cut(s)	233
PscI	ACATGT	1 cut(s)	4638
PshBI	ATTAAT	1 cut(s)	3072
Psp124BI	GAGCTC	4 cut(s)	3132, 3265, 3749, 5432
Psp1406I	AACGTT	2 cut(s)	441, 4274
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	6 cut(s)	687, 1999, 2095, 2199, 2358, 4194
PspGI	CCWGG	6 cut(s)	687, 1999, 2095, 2199, 2358, 4194
PspPI	GGNCC	7 cut(s)	233, 252, 356, 1835, 2552, 2591, 2806
PspPPI	RGGWCCY	1 cut(s)	233
PstI	CTGCAG	3 cut(s)	1801, 2878, 4870
PstNI	CAGNNNCTG	6 cut(s)	1703, 1781, 1808, 2096, 3812, 4106
PvuII	CAGCTG	3 cut(s)	4880, 5261, 5324
RsaI	GTAC	8 cut(s)	1075, 1144, 2526, 2649, 3810, 4461, 4643, 4976
RsaNI	GTAC	8 cut(s)	1074, 1143, 2525, 2648, 3809, 4460, 4642, 4975
RseI	CAYNNNNRTG	6 cut(s)	647, 2520, 4803, 5166, 5297, 5720
SacI	GAGCTC	4 cut(s)	3132, 3265, 3749, 5432
SapI	GCTCTTC	1 cut(s)	3754
Sau96I	GGNCC	7 cut(s)	233, 252, 356, 1835, 2552, 2591, 2806
SduI	GDGCHC	9 cut(s)	614, 2800, 3132, 3265, 3691, 3749, 4662, 5202, 5432
SexAI	ACCWGGT	1 cut(s)	2095
SfcI	CTRYAG	5 cut(s)	1797, 2368, 2874, 3726, 4866
SfuI	TTCGAA	1 cut(s)	982
SinI	GGWCC	5 cut(s)	233, 356, 1835, 2552, 2591
SmiMI	CAYNNNNRTG	6 cut(s)	647, 2520, 4803, 5166, 5297, 5720
SpeI	ACTAGT	2 cut(s)	1490, 5416
SphI	GCATGC	1 cut(s)	646
SspI	AATATT	2 cut(s)	1468, 3088
SstI	GAGCTC	4 cut(s)	3132, 3265, 3749, 5432
StyI	CCWWGG	3 cut(s)	204, 4645, 5601
TaiI	ACGT	7 cut(s)	444, 2959, 3013, 3642, 3882, 4277, 4483
TatI	WGTACW	3 cut(s)	1142, 2647, 4459
TauI	GCSGC	4 cut(s)	3541, 4369, 4630, 5321
TseFI	GTSAC	7 cut(s)	90, 1015, 1079, 1721, 1972, 3343, 3832
Tsp45I	GTSAC	7 cut(s)	90, 1015, 1079, 1721, 1972, 3343, 3832
TspGWI	ACGGA	5 cut(s)	798, 1139, 1648, 3773, 5340
Van91I	CCANNNNNTGG	1 cut(s)	4619
Vha464I	CTTAAG	3 cut(s)	416, 2999, 3203
VpaK11BI	GGWCC	5 cut(s)	233, 356, 1835, 2552, 2591
VspI	ATTAAT	1 cut(s)	3072
XapI	RAATTY	9 cut(s)	978, 1853, 1947, 2145, 2209, 3575, 4762, 4955, 5188
XbaI	TCTAGA	1 cut(s)	2038
XceI	RCATGY	4 cut(s)	646, 2297, 4642, 5504
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3513, 3588
XmnI	GAANNNNTTC	1 cut(s)	274
Zsp2I	ATGCAT	3 cut(s)	2035, 3772, 4897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.