Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Forward (+)

823477 .. 827392

Gene Structure 3916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01420.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3060 bp

ATGGATCTTGGTGCTAGCATTATAACTGGTGTTGAGGCTGATTGGGCGACTGAAAGACGACCAGACCCCTCCTCTTTGGTTTGTGCACAGCTGGGCCTTGAGTTGACTGTCTTAAACAGTGATTGCCCTCTTTATGACATTGCAACAGGTGAAAAGGTTCCTGCAGATCTGGATGAAGCATTGGAAGCAGAGTTCAACAGCCTTCTTGATGACATGGTATTGCTTGTTGCACAGGAGGGAGAACAGACAAGAATGTCTCTCGAGAAAGGTTTGGAACATGCCCTCAAGAGGCGTCGTATGGCAAAAACAGCGACCAGTGTTGAAGAAAAAGAACTGTATGGTTTAATGGATGGTTTCATTGATGCCAAAAAAAATATTGATAGAGCTGAGAAAAGTTGTCAAAAGCTAGAGCTTTTGAGCCCTCTTGAGAGGAGGGTCATGGATTGGCATTTTGCCAATTTGGAATATGGTTGTGCTGCTCCGCTGAAGGAGGTATCTCTCCCCAACTGGAACCAGGATGATGTTTATGGTGGCTTTGGAGGAGCTCACTGCATGATTAAAGGGGGTTACAGCACTGTTGTTGAGTCTCTTGGAGAAGGACTTCAAATTCACTTGAATCATGTAGTCACTGATATTTCATATGGCACCAAAGACACTGAATTGAACACTAACCGGTGTAACAAAGTCAAGGTTTCCACATCTAATGGGAGCGATTTTTCAGGAGATGCAATTTTGATTACAGTGCCTCTTGGGTGCTTAAAAGCAGAAACCATCAAATTTTCCCCACCATTGCCCCACTGGAAACATTCTTCCATTCTGCGGCTTGGGTTTGGAGTTCTTAATAAGGTAGTTTTGGAATTTCCAGATGTCTTTTGGGATGATTCTGTGGATTACTTTGGAGCAACTGCTGAGGAAACAGAACTGAGGGGCCAGTGCTTTATGTTCTGGAATGTCAAGAAAACCGTCGGGGCTCCTGTTCTCATAGCCTTAGTGGTTGGTAAGGCAGCTATAGATGGGCAAAATATGAGCTCTTCTGAACATGTTAACCATGCGATAGTGGTTCTTCGTAAATTGTTTGGAGAGGCTTCAGTACCTGATCCTGATGCATCAGTTGTGACAGATTGGGGTAAGGATCCTTTCAGCTACGGTGCCTACTCATATGTTGCTGTTGGAGCTTCGGGGGAAGATTATGATATACTAGGGAGACCTGTTGAGAACTGCCTATTTTTTGCTGGTGAAGCTACCTGCAAGGAGCATCCTGACACTGTTGGTGGTGCGATGATGAGTGGCCTCCGGGAGGCAGTGCGTATAATTGACATACTGACTACTGGAAATGATTACACAGCAGAAGCAGACGCCATTGCAGGTATTCAGAGACAATCAGATTCTGAAAGGGCTGAAGTTAGAGACATAACAAGGAGACTTGATGCAGTTGAACTTTCAGATGTCCTTTACACGAACAAGGAGGCCCTACTCCAGGACATGTTCTTTAATGCAAAGACTACCAAAGGAAGGTTGCATCTGGCCAAAGAGTTATTGAGTCTTCCTGTTGAAACCTTGAAGTCCTTTGCTGGCACCAAAGAAGGGCTGACTACTCTCAACTCGTGGATACTGGACTCGATGGGGAAGGCTGGGACTCAACTCTTGCGGCATTGTGTTCGACTCCTTGTGCTTGTTTCAACAGACCTACTGGCTGTGCGCTTGTCTGGCATTGGGAAAACTGTACGAGAAAAAGTTTGTGTACATACAAGCCGTGATATACGTGCCATAGCAAGTCAGCTGGTTAACGTGTGGCTTGAAGTTTTCCGCAAGGAAAAAGCTTCCAATGGTGCGTTGAAGTTGTCAAGGCAAGCAACTGCTGCAGATGCATTGAGGAGAAAACCAATTAGAGATCCATCTTCTGGTAAGCCGCCTCTACACACATTTCATGGTGGTTCAGAGCACAAAGGAAGCTTACAGGATTCAGCATCGACCGCAAGCCATTTGCCTTTGAATGCAAATGGTAAGAAAGTGAATGGCAAAACCATTAAGGGTGAAACAGAAAATTCCTCAAAGTCAGAGATTAATTCGTCAAGGCTTCGAGGTTCAACTGGCAGACCACATTCTGAGCTAAAGGAGAATGACGTTGCTGTGACAGAAGCAGAACGAGCTGCCATTGCTGCTGCTGAAGCAGCCCGTGCAGCAGCACTTGCAGCTGCTGAGGCATATGCATCTTCAGAAGCCAAGAGTGGTACTCTGCTTCAGCTTCCCAAGATTCCCTCATTTCATAAGTTTGCTCGACGGGAGCAGTACCCTCAAATGGATGAGTATGATTTTAGGAAGAAGTGGTCAGGTGGTGTTTTGGGTAGACAAGATTGTATATCAGAAATAGACTCAAGAAACTGCAAAGTTAGGGACTGGTCTGTTGATTTCTCTGCCGCTTGCGTCAATATTGATAGTTCAAGAATGTCAGTCGATAACCTCTCCCAGCGGAGCAATCCAAATGAGACTGGTAGTCAAACAAATTTCAGAGAGCACTCAGGAGAGAGTGCTGCTGTCGACAGCAGTCTTTATACAAGAGCATGGGTTGATACAGCTGGTAGTGCTGGGATAAAGGATTATCATGCCATTGAGATGTGGCAATCTCAAGCAGCTGCAGCAGACCCTGATTTCTTCCATCCAGAACCGTATATACATGACGAGGAAGATTCAAATACGACTTCAAGAAAACACAGCTGGAAGCATGAAGGACCTGTGAATGAGGGCTCTGTTTCCCAAGTTACCGTGAACAAGGAGTCGTTAAAAAATCATCATCGAGGAGCAGATAATATTAAGCAGGCGGTTGTCGATTATGTGGCATCATTGCTTATGCCTCTTTATAAAGCTAAAAAGATAGATAGAGAGGGATACAAGTCAATCATGAAGAAAAGTGCTACCAAAGTCATGGAGCTCGCCACAGACTCAGAAAAAGCCATGGCTGTTTATGAGTTTCTTGATTTCAAGCGCAGGAACAAGATCCGTGCTTTTGTGGATAAATTGATTGAGAGGCACATGGCAGTAAAGCCCACGGTGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

1020

Amino Acids

111.94

Weight (kDa)

6.02

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	23, 2859
AasI	GACNNNNNNGTC	1 cut(s)	253
Acc36I	ACCTGC	2 cut(s)	1253, 1355
AccB1I	GGYRCC	3 cut(s)	644, 1148, 1574
AccB7I	CCANNNNNTGG	1 cut(s)	1901
AccI	GTMKAC	2 cut(s)	2347, 2538
AciI	CCGC	9 cut(s)	482, 820, 1648, 1807, 1910, 1974, 2418, 2470, 2819
AclWI	GGATC	6 cut(s)	12, 1091, 1127, 1140, 1886, 2989
AcoI	YGGCCR	1 cut(s)	1524
AcsI	RAATTY	5 cut(s)	606, 776, 857, 2044, 2503
AcuI	CTGAAG	6 cut(s)	506, 1071, 1419, 2187, 2199, 2225
AcyI	GRCGYC	2 cut(s)	292, 1356
AfaI	GTAC	5 cut(s)	1092, 1725, 1743, 2233, 2291
AfiI	CCNNNNNNNGG	8 cut(s)	288, 819, 1297, 1477, 1512, 1584, 1901, 2299
AflIII	ACRYGT	3 cut(s)	1039, 1482, 1788
AgeI	ACCGGT	1 cut(s)	672
AhdI	GACNNNNNGTC	1 cut(s)	2493
AjnI	CCWGG	2 cut(s)	513, 1476
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
Alw21I	GWGCWC	6 cut(s)	88, 547, 1031, 1944, 2517, 2931
Alw26I	GTCTC	7 cut(s)	261, 591, 1198, 1369, 1401, 1414, 2480
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	6 cut(s)	12, 1091, 1127, 1140, 1886, 2989
AlwNI	CAGNNNCTG	4 cut(s)	1094, 1388, 2198, 2645
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	5 cut(s)	94, 928, 1288, 1467, 1524
ApaLI	GTGCAC	1 cut(s)	84
ApoI	RAATTY	5 cut(s)	606, 776, 857, 2044, 2503
AseI	ATTAAT	1 cut(s)	2064
AsiGI	ACCGGT	1 cut(s)	672
Asp700I	GAANNNNTTC	2 cut(s)	156, 600
AspLEI	GCGC	2 cut(s)	1701, 2985
AspS9I	GGNCC	4 cut(s)	94, 928, 1468, 2729
AsuC2I	CCSGG	1 cut(s)	1295
AsuHPI	GGTGA	3 cut(s)	161, 1247, 2045
AsuNHI	GCTAGC	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	2729
BaeGI	GKGCMC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	1526
BamHI	GGATCC	1 cut(s)	1132
BanI	GGYRCC	3 cut(s)	644, 1148, 1574
BanII	GRGCYC	6 cut(s)	422, 547, 973, 1031, 2747, 2931
BauI	CACGAG	1 cut(s)	1603
BbsI	GAAGAC	1 cut(s)	1535
Bbv12I	GWGCWC	6 cut(s)	88, 547, 1031, 1944, 2517, 2931
BbvCI	CCTCAGC	2 cut(s)	909, 2199
BccI	CCATC	6 cut(s)	344, 779, 1007, 1615, 1903, 2664
BceAI	ACGGC	1 cut(s)	1737
BcgI	CGANNNNNNTGC	2 cut(s)	1640, 1674
BciT130I	CCWGG	2 cut(s)	515, 1478
BciVI	GTATCC	2 cut(s)	1602, 2879
BcnI	CCSGG	1 cut(s)	1295
BcoDI	GTCTC	7 cut(s)	261, 591, 1198, 1369, 1401, 1414, 2480
BfaI	CTAG	3 cut(s)	15, 407, 1199
BfmI	CTRYAG	4 cut(s)	162, 1008, 1860, 2634
BfuAI	ACCTGC	2 cut(s)	1253, 1355
BfuI	GTATCC	2 cut(s)	1602, 2879
BglII	AGATCT	1 cut(s)	166
Bme1390I	CCNGG	3 cut(s)	515, 1295, 1478
Bme18I	GGWCC	1 cut(s)	2729
BmeRI	GACNNNNNGTC	1 cut(s)	2493
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	4 cut(s)	94, 928, 1468, 2729
BmiI	GGNNCC	8 cut(s)	159, 512, 646, 929, 972, 1134, 1150, 1576
BmrFI	CCNGG	3 cut(s)	515, 1295, 1478
BmtI	GCTAGC	1 cut(s)	18
BoxI	GACNNNNGTC	1 cut(s)	2544
BpiI	GAAGAC	1 cut(s)	1535
BplI	GAGNNNNNCTC	2 cut(s)	2218, 2250
BpmI	CTGGAG	1 cut(s)	1460
Bpu10I	CCTNAGC	2 cut(s)	909, 2199
BpuEI	CTTGAG	5 cut(s)	119, 269, 446, 2359, 2610
BpuMI	CCSGG	1 cut(s)	1295
BsaAI	YACGTR	1 cut(s)	1763
BsaHI	GRCGYC	2 cut(s)	292, 1356
BsaI	GGTCTC	1 cut(s)	1198
BsaJI	CCNNGG	2 cut(s)	2952, 3045
BsaWI	WCCGGW	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	8 cut(s)	288, 819, 1297, 1477, 1512, 1584, 1901, 2299
Bse118I	RCCGGY	1 cut(s)	672
Bse3DI	GCAATG	5 cut(s)	138, 788, 1359, 2154, 2840
BseBI	CCWGG	2 cut(s)	515, 1478
BseDI	CCNNGG	2 cut(s)	2952, 3045
BseGI	GGATG	7 cut(s)	178, 355, 523, 883, 1255, 2308, 2656
BseLI	CCNNNNNNNGG	8 cut(s)	288, 819, 1297, 1477, 1512, 1584, 1901, 2299
BseMI	GCAATG	5 cut(s)	138, 788, 1359, 2154, 2840
BseMII	CTCAG	7 cut(s)	378, 900, 914, 2097, 2190, 2532, 2955
BseRI	GAGGAG	5 cut(s)	61, 445, 555, 1888, 2811
BseSI	GKGCMC	1 cut(s)	88
BseYI	CCCAGC	4 cut(s)	91, 1631, 2466, 2585
BsgI	GTGCAG	1 cut(s)	2199
Bsh1285I	CGRYCG	1 cut(s)	1974
BshFI	GGCC	5 cut(s)	96, 930, 1290, 1469, 1526
BshNI	GGYRCC	3 cut(s)	644, 1148, 1574
BshTI	ACCGGT	1 cut(s)	672
BsiEI	CGRYCG	1 cut(s)	1974
BsiHKAI	GWGCWC	6 cut(s)	88, 547, 1031, 1944, 2517, 2931
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	673, 1294
BslFI	GGGAC	2 cut(s)	1648, 2408
BslI	CCNNNNNNNGG	8 cut(s)	288, 819, 1297, 1477, 1512, 1584, 1901, 2299
BsmAI	GTCTC	7 cut(s)	261, 591, 1198, 1369, 1401, 1414, 2480
BsmFI	GGGAC	2 cut(s)	1648, 2408
BsmI	GAATGC	1 cut(s)	1999
BsnI	GGCC	5 cut(s)	96, 930, 1290, 1469, 1526
Bso31I	GGTCTC	1 cut(s)	1198
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	9 cut(s)	88, 422, 547, 973, 1031, 1944, 2517, 2747, 2931
Bsp1407I	TGTACA	1 cut(s)	1741
Bsp143I	GATC	6 cut(s)	4, 166, 1096, 1132, 1891, 2994
Bsp19I	CCATGG	1 cut(s)	2952
BspACI	CCGC	9 cut(s)	482, 820, 1648, 1807, 1910, 1974, 2418, 2470, 2819
BspANI	GGCC	5 cut(s)	96, 930, 1290, 1469, 1526
BspCNI	CTCAG	7 cut(s)	379, 901, 915, 2098, 2191, 2531, 2954
BspHI	TCATGA	1 cut(s)	2898
BspLI	GGNNCC	8 cut(s)	159, 512, 646, 929, 972, 1134, 1150, 1576
BspMAI	CTGCAG	3 cut(s)	166, 1864, 2638
BspMI	ACCTGC	2 cut(s)	1253, 1355
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	6 cut(s)	12, 1091, 1127, 1140, 1886, 2989
BspQI	GCTCTTC	1 cut(s)	1036
BspT107I	GGYRCC	3 cut(s)	644, 1148, 1574
BspTNI	GGTCTC	1 cut(s)	1198
BsrDI	GCAATG	5 cut(s)	138, 788, 1359, 2154, 2840
BsrFI	RCCGGY	1 cut(s)	672
BsrGI	TGTACA	1 cut(s)	1741
BssAI	RCCGGY	1 cut(s)	672
BssECI	CCNNGG	2 cut(s)	2952, 3045
BssMI	GATC	6 cut(s)	4, 166, 1096, 1132, 1891, 2994
BssNI	GRCGYC	2 cut(s)	292, 1356
BssSI	CACGAG	1 cut(s)	1603
BssT1I	CCWWGG	1 cut(s)	2952
Bst2BI	CACGAG	1 cut(s)	1603
Bst2UI	CCWGG	2 cut(s)	515, 1478
Bst6I	CTCTTC	1 cut(s)	1036
BstACI	GRCGYC	2 cut(s)	292, 1356
BstAPI	GCANNNNNTGC	3 cut(s)	1859, 2177, 2189
BstAUI	TGTACA	1 cut(s)	1741
BstBAI	YACGTR	1 cut(s)	1763
BstC8I	GCNNGC	7 cut(s)	16, 1573, 1851, 1978, 2422, 2817, 2931
BstDEI	CTNAG	8 cut(s)	387, 909, 923, 988, 2106, 2199, 2518, 2941
BstDSI	CCRYGG	2 cut(s)	2952, 3045
BstENI	CCTNNNNNAGG	2 cut(s)	1295, 1475
BstF5I	GGATG	7 cut(s)	178, 355, 523, 883, 1255, 2308, 2656
BstHHI	GCGC	2 cut(s)	1701, 2985
BstKTI	GATC	6 cut(s)	7, 169, 1099, 1135, 1894, 2997
BstMAI	GTCTC	7 cut(s)	261, 591, 1198, 1369, 1401, 1414, 2480
BstMBI	GATC	6 cut(s)	4, 166, 1096, 1132, 1891, 2994
BstMCI	CGRYCG	1 cut(s)	1974
BstNI	CCWGG	2 cut(s)	515, 1478
BstNSI	RCATGY	3 cut(s)	281, 1043, 1486
BstPAI	GACNNNNGTC	1 cut(s)	2544
BstSCI	CCNGG	3 cut(s)	513, 1293, 1476
BstSFI	CTRYAG	4 cut(s)	162, 1008, 1860, 2634
BstSLI	GKGCMC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	1535
BstX2I	RGATCY	5 cut(s)	4, 166, 1132, 1891, 2994
BstXI	CCANNNNNNTGG	1 cut(s)	2923
BstYI	RGATCY	5 cut(s)	4, 166, 1132, 1891, 2994
BsuI	GTATCC	2 cut(s)	1602, 2879
BsuRI	GGCC	5 cut(s)	96, 930, 1290, 1469, 1526
BtgI	CCRYGG	2 cut(s)	2952, 3045
BtgZI	GCGATG	1 cut(s)	1292
BtsCI	GGATG	7 cut(s)	178, 355, 523, 883, 1255, 2308, 2656
BtsI	GCAGTG	2 cut(s)	547, 1308
BveI	ACCTGC	2 cut(s)	1253, 1355
Cac8I	GCNNGC	7 cut(s)	16, 1573, 1851, 1978, 2422, 2817, 2931
CaiI	CAGNNNCTG	4 cut(s)	1094, 1388, 2198, 2645
CciI	TCATGA	1 cut(s)	2898
CfoI	GCGC	2 cut(s)	1701, 2985
Cfr10I	RCCGGY	1 cut(s)	672
Cfr13I	GGNCC	4 cut(s)	94, 928, 1468, 2729
CseI	GACGC	3 cut(s)	281, 1364, 2413
Csp6I	GTAC	5 cut(s)	1091, 1724, 1742, 2232, 2290
CspAI	ACCGGT	1 cut(s)	672
CviQI	GTAC	5 cut(s)	1091, 1724, 1742, 2232, 2290
DdeI	CTNAG	8 cut(s)	387, 909, 923, 988, 2106, 2199, 2518, 2941
DpnI	GATC	6 cut(s)	6, 168, 1098, 1134, 1893, 2996
DpnII	GATC	6 cut(s)	4, 166, 1096, 1132, 1891, 2994
DrdI	GACNNNNNNGTC	1 cut(s)	253
DriI	GACNNNNNGTC	1 cut(s)	2493
DseDI	GACNNNNNNGTC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	1524
Eam1104I	CTCTTC	1 cut(s)	1036
Eam1105I	GACNNNNNGTC	1 cut(s)	2493
EarI	CTCTTC	1 cut(s)	1036
Ecl136II	GAGCTC	3 cut(s)	545, 1029, 2929
Eco130I	CCWWGG	1 cut(s)	2952
Eco24I	GRGCYC	6 cut(s)	422, 547, 973, 1031, 2747, 2931
Eco31I	GGTCTC	1 cut(s)	1198
Eco47I	GGWCC	1 cut(s)	2729
Eco53kI	GAGCTC	3 cut(s)	545, 1029, 2929
Eco57I	CTGAAG	6 cut(s)	506, 1071, 1419, 2187, 2199, 2225
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	3 cut(s)	545, 1029, 2929
EcoNI	CCTNNNNNAGG	2 cut(s)	1295, 1475
EcoO109I	RGGNCCY	2 cut(s)	1468, 2729
EcoRII	CCWGG	2 cut(s)	513, 1476
EcoT14I	CCWWGG	1 cut(s)	2952
EcoT22I	ATGCAT	3 cut(s)	1108, 1870, 2212
EcoT38I	GRGCYC	6 cut(s)	422, 547, 973, 1031, 2747, 2931
ErhI	CCWWGG	1 cut(s)	2952
FaqI	GGGAC	2 cut(s)	1648, 2408
FauNDI	CATATG	3 cut(s)	640, 1159, 2206
FblI	GTMKAC	2 cut(s)	2347, 2538
FokI	GGATG	7 cut(s)	185, 362, 530, 890, 1242, 2315, 2643
FriOI	GRGCYC	6 cut(s)	422, 547, 973, 1031, 2747, 2931
FspBI	CTAG	3 cut(s)	15, 407, 1199
GlaI	GCGC	2 cut(s)	1700, 2984
GsaI	CCCAGC	4 cut(s)	95, 1635, 2470, 2589
GsuI	CTGGAG	1 cut(s)	1460
HaeIII	GGCC	5 cut(s)	96, 930, 1290, 1469, 1526
HapII	CCGG	2 cut(s)	673, 1294
HgaI	GACGC	3 cut(s)	281, 1364, 2413
HhaI	GCGC	2 cut(s)	1701, 2985
Hin1I	GRCGYC	2 cut(s)	292, 1356
Hin6I	GCGC	2 cut(s)	1699, 2983
HinP1I	GCGC	2 cut(s)	1699, 2983
HincII	GTYRAC	4 cut(s)	105, 1045, 1786, 2539
HindII	GTYRAC	4 cut(s)	105, 1045, 1786, 2539
HindIII	AAGCTT	2 cut(s)	1818, 1951
HpaI	GTTAAC	2 cut(s)	1045, 1786
HpaII	CCGG	2 cut(s)	673, 1294
HphI	GGTGA	3 cut(s)	161, 1247, 2045
Hpy166II	GTNNAC	8 cut(s)	86, 105, 1045, 1742, 1786, 2348, 2539, 2767
Hpy8I	GTNNAC	8 cut(s)	86, 105, 1045, 1742, 1786, 2348, 2539, 2767
Hpy99I	CGWCG	3 cut(s)	297, 968, 2283
HpyAV	CCTTC	7 cut(s)	212, 481, 590, 1506, 1577, 1621, 2720
HpyCH4IV	ACGT	3 cut(s)	1762, 1788, 2124
HpyF3I	CTNAG	8 cut(s)	387, 909, 923, 988, 2106, 2199, 2518, 2941
HpySE526I	ACGT	3 cut(s)	1762, 1788, 2124
Hsp92I	GRCGYC	2 cut(s)	292, 1356
HspAI	GCGC	2 cut(s)	1699, 2983
KspAI	GTTAAC	2 cut(s)	1045, 1786
Kzo9I	GATC	6 cut(s)	4, 166, 1096, 1132, 1891, 2994
LguI	GCTCTTC	1 cut(s)	1036
MaeI	CTAG	3 cut(s)	15, 407, 1199
MaeII	ACGT	3 cut(s)	1762, 1788, 2124
MaeIII	GTNAC	6 cut(s)	566, 625, 677, 1114, 2131, 2758
MalI	GATC	6 cut(s)	6, 168, 1098, 1134, 1893, 2996
MboI	GATC	6 cut(s)	4, 166, 1096, 1132, 1891, 2994
MflI	RGATCY	5 cut(s)	4, 166, 1132, 1891, 2994
MhlI	GDGCHC	9 cut(s)	88, 422, 547, 973, 1031, 1944, 2517, 2747, 2931
MlsI	TGGCCA	1 cut(s)	1526
MluNI	TGGCCA	1 cut(s)	1526
MlyI	GAGTC	8 cut(s)	593, 1549, 1610, 1630, 1656, 2366, 2783, 2933
MmeI	TCCRAC	1 cut(s)	1150
Mox20I	TGGCCA	1 cut(s)	1526
Mph1103I	ATGCAT	3 cut(s)	1108, 1870, 2212
MroXI	GAANNNNTTC	2 cut(s)	156, 600
MscI	TGGCCA	1 cut(s)	1526
MslI	CAYNNNNRTG	1 cut(s)	2612
Msp20I	TGGCCA	1 cut(s)	1526
MspA1I	CMGCKG	8 cut(s)	91, 484, 1780, 2195, 2470, 2576, 2633, 2715
MspI	CCGG	2 cut(s)	673, 1294
MspR9I	CCNGG	3 cut(s)	515, 1295, 1478
Mva1269I	GAATGC	1 cut(s)	1999
MvaI	CCWGG	2 cut(s)	515, 1478
NciI	CCSGG	1 cut(s)	1295
NcoI	CCATGG	1 cut(s)	2952
NdeI	CATATG	3 cut(s)	640, 1159, 2206
NdeII	GATC	6 cut(s)	4, 166, 1096, 1132, 1891, 2994
NheI	GCTAGC	1 cut(s)	14
NlaIV	GGNNCC	8 cut(s)	159, 512, 646, 929, 972, 1134, 1150, 1576
NmuCI	GTSAC	3 cut(s)	625, 1114, 2131
NsiI	ATGCAT	3 cut(s)	1108, 1870, 2212
NspI	RCATGY	3 cut(s)	281, 1043, 1486
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	2898
PciI	ACATGT	2 cut(s)	1039, 1482
PciSI	GCTCTTC	1 cut(s)	1036
PctI	GAATGC	1 cut(s)	1999
PdmI	GAANNNNTTC	2 cut(s)	156, 600
PfeI	GAWTC	6 cut(s)	616, 881, 1385, 1961, 2254, 2687
PflMI	CCANNNNNTGG	1 cut(s)	1901
PfoI	TCCNGGA	2 cut(s)	1293, 1476
PinAI	ACCGGT	1 cut(s)	672
PleI	GAGTC	8 cut(s)	592, 1548, 1610, 1630, 1656, 2366, 2782, 2933
PpsI	GAGTC	8 cut(s)	592, 1548, 1610, 1630, 1656, 2366, 2782, 2933
Ppu21I	YACGTR	1 cut(s)	1763
PpuMI	RGGWCCY	1 cut(s)	2729
PscI	ACATGT	2 cut(s)	1039, 1482
PshAI	GACNNNNGTC	1 cut(s)	2544
PshBI	ATTAAT	1 cut(s)	2064
PsiI	TTATAA	2 cut(s)	23, 2859
Psp124BI	GAGCTC	3 cut(s)	547, 1031, 2931
Psp5II	RGGWCCY	1 cut(s)	2729
Psp6I	CCWGG	2 cut(s)	513, 1476
PspFI	CCCAGC	4 cut(s)	91, 1631, 2466, 2585
PspGI	CCWGG	2 cut(s)	513, 1476
PspN4I	GGNNCC	8 cut(s)	159, 512, 646, 929, 972, 1134, 1150, 1576
PspPI	GGNCC	4 cut(s)	94, 928, 1468, 2729
PspPPI	RGGWCCY	1 cut(s)	2729
PsrI	GAACNNNNNNTAC	2 cut(s)	2655, 2687
PstI	CTGCAG	3 cut(s)	166, 1864, 2638
PstNI	CAGNNNCTG	4 cut(s)	1094, 1388, 2198, 2645
PsuI	RGATCY	5 cut(s)	4, 166, 1132, 1891, 2994
PvuII	CAGCTG	6 cut(s)	91, 1780, 2195, 2576, 2633, 2715
RsaI	GTAC	5 cut(s)	1092, 1725, 1743, 2233, 2291
RsaNI	GTAC	5 cut(s)	1091, 1724, 1742, 2232, 2290
RseI	CAYNNNNRTG	1 cut(s)	2612
SacI	GAGCTC	3 cut(s)	547, 1031, 2931
SalI	GTCGAC	1 cut(s)	2537
SapI	GCTCTTC	1 cut(s)	1036
Sau3AI	GATC	6 cut(s)	4, 166, 1096, 1132, 1891, 2994
Sau96I	GGNCC	4 cut(s)	94, 928, 1468, 2729
SchI	GAGTC	8 cut(s)	593, 1549, 1610, 1630, 1656, 2366, 2783, 2933
ScrFI	CCNGG	3 cut(s)	515, 1295, 1478
SduI	GDGCHC	9 cut(s)	88, 422, 547, 973, 1031, 1944, 2517, 2747, 2931
SfcI	CTRYAG	4 cut(s)	162, 1008, 1860, 2634
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	2729
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	2612
SmlI	CTYRAG	6 cut(s)	98, 260, 284, 425, 2374, 2625
SmoI	CTYRAG	6 cut(s)	98, 260, 284, 425, 2374, 2625
SsiI	CCGC	9 cut(s)	482, 820, 1648, 1807, 1910, 1974, 2418, 2470, 2819
SspI	AATATT	3 cut(s)	376, 2431, 2809
SspMI	CTAG	3 cut(s)	15, 407, 1199
SstI	GAGCTC	3 cut(s)	547, 1031, 2931
StyD4I	CCNGG	3 cut(s)	513, 1293, 1476
StyI	CCWWGG	1 cut(s)	2952
TaiI	ACGT	3 cut(s)	1765, 1791, 2127
TatI	WGTACW	1 cut(s)	1741
TauI	GCSGC	4 cut(s)	823, 1651, 1912, 2420
TfiI	GAWTC	6 cut(s)	616, 881, 1385, 1961, 2254, 2687
TseFI	GTSAC	3 cut(s)	625, 1114, 2131
Tsp45I	GTSAC	3 cut(s)	625, 1114, 2131
TspDTI	ATGAA	7 cut(s)	189, 346, 627, 1916, 2255, 2739, 2915
TspGWI	ACGGA	1 cut(s)	2987
Van91I	CCANNNNNTGG	1 cut(s)	1901
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	2729
VspI	ATTAAT	1 cut(s)	2064
XagI	CCTNNNNNAGG	2 cut(s)	1295, 1475
XapI	RAATTY	5 cut(s)	606, 776, 857, 2044, 2503
XceI	RCATGY	3 cut(s)	281, 1043, 1486
XcmI	CCANNNNNNNNNTGG	2 cut(s)	795, 870
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	2 cut(s)	2347, 2538
XmnI	GAANNNNTTC	2 cut(s)	156, 600
XspI	CTAG	3 cut(s)	15, 407, 1199
Zsp2I	ATGCAT	3 cut(s)	1108, 1870, 2212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.