Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Reverse (-)

62346273 .. 62355714

Gene Structure 9442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27148

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5742 bp

ATGGATGGAGACGAGAAGAGGTCGGGGTTTAAGAAGAGATCGAAGTTAATGGAGGTTAATCACAATTCGGATGACGATGAGCCGATTGGGTCACTGCTGAAGAAGAGGCAGCGAAACCCTAAGAAGGTTAAGCTGGGGTTGGAGGGCGAAAGGGGCAAGAAGGTTGAGGCTGGAGAGGAGGATTTGGGGGGACTGGATGATACCTTGGCAAGTTTTAGGAAGAAGCTCAAGGGTCCTAAGAGGGATTCTGGGGCCGGAACCGGGAGGGGAAGGAGTTCTAGTTTGGATGTTGTGCAGTCTTCGGATCAGGATGGGGGGTCGGATGCAAAATCAGTGTCGAGGAGTATGGAGAAAGGACCGGTCATTGATGATGATGGAACCGATGTGATTTTGGATGTAGAGGTGGAAAACAGGCTTAAGGGAAAGGGAAAGAGACCCAAGGTTTCAGGTCTGGTATCTGCAGAGGGTTCTAATAGCTCTTTGGATCATCATTCGCAAGATTCATTATCGGCATTTTTTCAGAAGGCACAGTCTGGTGTTACTAAGAAGTCTCATCCCTCTTCGAGTCTTAGAGAGAAGAGTGGTTCTCTGGATTTGGAGGATGGACTGAGCCCTAGTTCAGAAGGTGTTGGAGGAAATAGCATGCCTGTGACTGTGCAGAGACATAGTTCTGTTTCAAAACTGAACCAGGAAAATCCAAGATTTGAAGATAGTTTGCTCTTCGATTCTGGTTTTAATTCGTTGGATTCAGTCAACAATCAGTATAAGATAGAGGAACAAAACAGATTTTGCCAAGATTCTGACTGCAACAGACAGAATCAAGAGAGATCTCAAGGACTTTATTCTATTCCAGATGACATGACGAGACTTGAGGATAGAAAGAATGAACCCACAGTGGATTATTCTGGTTTAAATCTTCAAGAGGAACTATGTAGCTTGGACAGATCTAATGGCGGAGATAGCCAGCACTTACAGAAAATTCAAACTGTTGAGAACCGACTGAGGCACCGCTCTGTGATAAACTCAAACACTCTAACGATTTGTGAACAGAAGGGGGAAATGCTTGAGGTCGGTACCAGTGACTCCAAAGGGGGCTTTCCTGATGCTTTGTCCATTCAGTCCACGGATGTTCTAGCTAGATGTACATCAGGTGCAGACTGTGAAATATCTTCTTCAACTGGAAAAGAAATTCCGATGCCTCATTATAATGATGAGTTACTGAACAAATCTAACTTTGCCCCGGATACACTAAAGAGGGAAGAAACTCCTTGTAATCGTGTAATTGCTTACACTGAGGGGCAAGATCTTGCTTCCAGTCCTTTGCATGAAGAGAATGCCATGATAACTGATTGTCAGATATCTTCAATCCAGGTGAGTCATCAAGCGAAAGCCTTGCAAACTGCCTCAGTTCAGAAGGGGAGCTATTGTGAAGATTTATCTTCTGATGAAGCATCAAAAGAGAGAATTATTCCTAAACATGATTATATTACTAGTAATGAGGAGGTTGATGGAGCTTCTCCTCCTTTATATGCAACAGTAGATGAGAATGAGAGTTTCCCAGAAGACACAGTATCTCTACCTGATATTGAAAACAGAGATGGTAAGCTCTCCGCTCTCCAGCGCATACCACGGAATGCTAGGAAACGCAGGCATGGAGACATGGCTTATGAGGGGGATGTTGATTGGGAGATCTCAGTAACTGATCAAGGATTGGATAGTGACAATTCAATTAGAGCAAGAGTGAAGTTTGATTCCTCTTCAAGTATTGGCACAGAAGCTGAAAGTGGTGGGGCTGCAGCAGTGTCTGCTGGTCTAAAAGCTCACGCAGTTGGTCCTGTTGAGAAGATTAAATTCAAGGAGATCTTGAAGCGAAGAGGCGGGCTTCAGGATTACTTGGAATGCAGGAATCAGATCTTAGCTCTGTGGAGCAAAGATGTTAGTCGAATTTTGCCTCTCACCGACTGTGGGGTCACAGAGCCGGCTTGTGTGAATGAACCTGGGCGTGCCTCCCTAATTAGGGATATTTATGCATTTCTAGATCTCAGTGGTTATATAAATGTTGGAATTGCTGCCGAGAAGGATAAAGCAGAACCTGGTTCTAAGCATGACTATAAAATAGTCAGAGAAAAACCTTTTGAGGAAATTTCTGGGGTTTCAATTGCTGACTCAGAGGATGGGGTTTCCTTCATCATTGGCCAGGTTAAGAATTCAAAAATATCCACCGATGCTAAGAATGGAATTACATTTAATAGCGAAAACTTGACTGAGGGAGCCACAAAAGACAATGGGCATGTTGAGGCAGTGGCATTGGAATTGTTTGATGCGAAACATCCTGAAGAATGCCAAGCTGATTACCTGGAAAACTGTAGTGCTGATGCAAGGTTCCAAAGTCGATTGGACAATATGGATGTTTCTAGTAGTGATCCCTCTGGTGAGACATTGGATGGTGGAGTCATCCCTGTTGTAACTCCAGAGATAAAGAATGAATCACAGAGTATTCTGTCAACGCCACATGATCATGTACCGAGTAATGATACCCTGCAATGTGGTCCAGAAGTCAGAAAGGAAATCATTGTCATAGGTGCTGGTCCTGCTGGCTTAACTGCTGCACGCCACTTGCAGCGTCAGGGGTTTTCAGTCAATGTACTTGAAGCTAGGAGTCGAATAGGAGGTCGTGTTTATACAGACCGGTCATCTCTATCAGTTGCAGTGGATCTTGGTGCTAGCATTATCACTGGTGTCGAGGCTGATTGGGCAACTGAAAGAAGACCTGATCCCTCCTCATTGGTTTGTGCTCAGTTGGGCCTTGAGTTGACTGTATTAAACAGTGATTGCCCTCTTTATGATATTGAAACAGGTCAAAAAGTTCCTGCAGATCTGGATGAGGCATTGGAAGCAGAGTTCAACAGCCTCCTTGATGACATGGTATTGCTTGTAGCACAGAAGGGAGAACGTGCAGCAAGAATGTCTCTTGAGGAAGGTTTTGAATATGTCCTTAAGAGGCGACGTATGGCACAATCAGGGAGTGCTAAAGAAAAAGAATTGCATGGTTCAAGGGATGGTTTGATTAATGCTAGGACAAATATTGATGGTAGAGTTGCTGATAAAAGTTATTGTAAGCAAGAGCTCTTGAGTCCTCTTGAGAGGAGGGTTATGGATTGGCATTTTGCTAATTTGGAGTATGGTTGTGCAGCTCCGCTTAAGGAGGTATCTCTACCCCATTGGAACCAAGATGATGTATATGGTGGCTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGCACTGTTGTTGAGTCTCTTGGAGAAGGACTGCGCATTCACTTGAATCATGTTGTCACTGATATTTCGTATGGCGCTGAGGATGGTGAATTGAATAATAACCAGTGTAACAAAGTCAAAGTTTCCACATCAAATGGGAGTATCTTTTGTGGAGATGCAGTCTTGATTACAGTGCCTCTTGGGTGCTTAAAAGCAGAAACCATAAAGTTTTCTCCACCATTGCCCCAGTGGAAACATTCTTCTATCACGCGGCTTGGATTTGGCGTTCTTAATAAAGTAGTTTTGGAATTTCCAGATGTCTTTTGGGATGACACCGTGGACTACTTTGGAGCAACTGCTGAAGAAACGGACCTGAGGGGTCAGTGCTTTATGTTCTGGAATATCAAGAAAACTGTTGGGGCTCCCGTTCTTATAGCTTTAGTGGTTGGTAAGGCAGCTATAGAAGGCCAAAATATGAGCTCTTCTGATCATGTTAACCATGCATTAGTGGCTCTCCGTAAATTGTTTGGAGAGGCGTCAGTACCTGATCCAGTTGCATCAGTTGTGACAGATTGGGGCAGGGATCCTTTCAGCTATGGTGCATACTCATACGTTGCTGTCGGAGCTTCTGGAAAAGACTATGACATACTAGGGAGACCTGTTGATAACTGCCTATTTTTCGCTGGTGAAGCTACCTGCAAGGAGCATCCCGACACTGTTGGTGGTGCAATGATGAGTGGGCTTCGAGAGTCAGTGCGTATAATTGACATACTGACAACTGGAAATGATTACACAGCAGAAGCAGAAGCAATGGAGTCGATACAGAGACAGTCAGCCTCTGAAAAGGATGAAGTTTGGGACATAACAAGGAGACTTGATGCAGTTGAACTTTCCGATGTCCTTTACAAGAACAGGGAAGCCTTACTCCAGGACTTGTTCTTTAGTGCAAAAACCACCAAAGGAAGGTTGCATCTGGCCAAAGAGTTATTGAGTCTTCCTGCTGAAACGTTGAAGTCCTTTGCTGGCACCAAAGAGGGGCTAACCACACTTAACTCATGGATACTGGACTCAATGGGGAAAGCGGGGACTCAACTCTTGCGGCATTGTGTTCGTCTTCTTGTTCTTGTGTCAACAGACCTACTGGCTGTGCGCTTGTCTGGCATTGGGAAAACTGTAAGAGAGAAAGTTTGTGTACATACTAGCCGTGATATACGTGCCATTGCAAGTCAGCTAGTTAGTGTGTGGCTTGAAGTCTTCCGAAGAGAAAAAGCTTCTAATGGAGGATTGAAATTGTCAAGGCAAGCCAATGGTGTAGATTCATTGAAGAGAAAAACAGTCAGAGACCCATCTTCTGGAAAGCCGCCACTACACATGTATCATGGTGCTTTTGAGCATAAAGGAAGTTTACAGGATTCTGCATCCACGGGAAGCCAATTGCCTCCAAATCCAAATGTGAAGAAATTGAATGGCAAAGCCATTAAACTTGAAACAGCAAATTCCTCAAGATTTGGAGGTTCAACAGGCAGACCACATAATGATGACTTTGCTATGACTGAAGAAGAAAGAGCTGCCATTGCTGCTGCTGAAGCAGCGCGAGCTGCAGCACTTGCAGCTGCTAAGGCATATGCATCTTCAGAAGCCAAGAGCAGTTCGTTGCTTCAGCTTCCTAAGATTCCCTCGTTTCATAAATTTGCTCGACGGGAGCAGTACGCTCAAATGGATGAGTATGATTTTAGGAGGAAGTGGTCTGGTGGTGTTTTGGGTAGAGAAGATTGCATATCTGAAATTGACTCTAGGAACTGCAAAGTAAGGAACTGGTCTGTTGATTTCTCCGCTGCTTGTGTCAATCTTGACAGTTCAAGAAGGTCAGTTGATAACCTCTCAGAGCGGAGCCATCCCAATGAGATCGCTAGTCAGTTGAATTTCCGAGAGCACTCAGGGGAGAGTGCTGCTGTTGACAGTAGTATCTATACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGGGTAAAAGACTATCATGCCATTGAGATGTGGCAATCTCAAGCAGCAGCAGCTGACCCTGATTTCTTCCATCCTGATCCGTATGTAAAGGATGAGGAAGATTCAAATACAACTTCTAAAGGACTAAGCTGGAAGCATGAAGGACTAGTAAATGAGAGCTCTGTTTCACAAGTTACTGTAAACAGGGGGTCATCGAAAAATCATCGTCGAGGAGCAGACCAAATTAAACATGCAGTTGTTGATTATGTGGCATCATTGCTTATGCCCCTCTATAAAGCTAAAAAGATTGATAGAGAGGGATACAAGTCAATCATGAAGAAAAGTGCTACCAAGGTCATGGAGCTAGCCACTGATGCAGAGAAAGCAATGGCTGTATCCGAGTTTCTTGATTTCAAGCGCAAGAACAAGATTCGTGCCTTTGTGGATAAATTGATTGAGAAGCACATGGCAGTGAAGCCTGTTGTGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

1913

Amino Acids

209.13

Weight (kDa)

5.54

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	608 - 686	2.5e-12	SWIRM domain
Thi4	PF01946	855 - 893	7.4e-06	Thi4 family
DAO	PF01266	857 - 891	2.2e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	859 - 915	3.9e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	865 - 1343	1.4e-86	Flavin containing amine oxidoreductase
SCAF11-like_C	PF23030	1830 - 1884	7.2e-06	SCAF11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1206
AasI	GACNNNNNNGTC	1 cut(s)	1967
Acc16I	TGCGCA	1 cut(s)	3320
Acc36I	ACCTGC	1 cut(s)	3968
Acc65I	GGTACC	1 cut(s)	1073
AccB1I	GGYRCC	3 cut(s)	1005, 1073, 4289
AccB7I	CCANNNNNTGG	1 cut(s)	4616
AccBSI	CCGCTC	3 cut(s)	1011, 1613, 5152
AccII	CGCG	2 cut(s)	3535, 4858
AclI	AACGTT	1 cut(s)	4271
AclWI	GGATC	9 cut(s)	312, 492, 2417, 2721, 2768, 3806, 3842, 3855, 5339
AcoI	YGGCCR	2 cut(s)	2194, 4239
AcuI	CTGAAG	8 cut(s)	119, 1868, 2355, 3645, 4839, 4869, 4881, 4907
AcyI	GRCGYC	1 cut(s)	3800
AfaI	GTAC	7 cut(s)	1075, 1144, 2523, 2646, 3807, 4458, 4973
AfiI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4227, 4299, 4616
AflII	CTTAAG	3 cut(s)	416, 2996, 3200
AflIII	ACRYGT	1 cut(s)	4635
AgeI	ACCGGT	2 cut(s)	358, 2688
AhlI	ACTAGT	2 cut(s)	1490, 5413
AjnI	CCWGG	7 cut(s)	687, 1368, 1996, 2092, 2196, 2355, 4191
AloI	GAACNNNNNNTCC	4 cut(s)	2885, 2917, 3534, 3566
Alw21I	GWGCWC	6 cut(s)	2797, 3129, 3262, 3746, 5199, 5429
AlwI	GGATC	9 cut(s)	312, 492, 2417, 2721, 2768, 3806, 3842, 3855, 5339
AlwNI	CAGNNNCTG	7 cut(s)	1700, 1778, 1805, 2093, 3809, 4103, 5321
AoxI	GGCC	5 cut(s)	252, 2194, 2803, 3730, 4239
ArsI	GACNNNNNNTTYG	4 cut(s)	320, 352, 2656, 2688
AseI	ATTAAT	1 cut(s)	3069
AsiGI	ACCGGT	2 cut(s)	358, 2688
Asp700I	GAANNNNTTC	1 cut(s)	274
Asp718I	GGTACC	1 cut(s)	1073
AspLEI	GCGC	6 cut(s)	1623, 3321, 3362, 4416, 4858, 5667
AspS9I	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3634
AsuC2I	CCSGG	2 cut(s)	262, 1241
AsuHPI	GGTGA	5 cut(s)	1384, 1948, 2444, 3383, 3962
AsuNHI	GCTAGC	2 cut(s)	2723, 5611
AvaII	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3634
AxyI	CCTNAGG	1 cut(s)	3638
BaeI	ACNNNNGTAYC	4 cut(s)	4622, 4655, 5212, 5245
BalI	TGGCCA	2 cut(s)	2196, 4241
BamHI	GGATCC	1 cut(s)	3847
BanI	GGYRCC	3 cut(s)	1005, 1073, 4289
BanII	GRGCYC	6 cut(s)	614, 3129, 3262, 3688, 3746, 5429
BbsI	GAAGAC	6 cut(s)	291, 1569, 2773, 4250, 4370, 4510
Bbv12I	GWGCWC	6 cut(s)	2797, 3129, 3262, 3746, 5199, 5429
BbvCI	CCTCAGC	1 cut(s)	3363
BceAI	ACGGC	1 cut(s)	4452
BcgI	CGANNNNNNTGC	6 cut(s)	1375, 1409, 4062, 4096, 4355, 4389
BciT130I	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4193
BciVI	GTATCC	4 cut(s)	1237, 4317, 5561, 5653
BclI	TGATCA	3 cut(s)	1702, 2515, 3751
BcnI	CCSGG	2 cut(s)	262, 1241
BcuI	ACTAGT	2 cut(s)	1490, 5413
BfmI	CTRYAG	6 cut(s)	459, 1794, 2365, 2871, 3723, 4863
BfoI	RGCGCY	1 cut(s)	3363
BfrI	CTTAAG	3 cut(s)	416, 2996, 3200
BfuAI	ACCTGC	1 cut(s)	3968
BfuI	GTATCC	4 cut(s)	1237, 4317, 5561, 5653
BglII	AGATCT	8 cut(s)	827, 944, 1303, 1689, 1860, 1911, 2038, 2875
Bme1390I	CCNGG	9 cut(s)	262, 689, 1241, 1370, 1998, 2094, 2198, 2357, 4193
Bme18I	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3634
BmgT120I	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3634
BmrFI	CCNGG	9 cut(s)	262, 689, 1241, 1370, 1998, 2094, 2198, 2357, 4193
BmrI	ACTGGG	1 cut(s)	3505
BmtI	GCTAGC	2 cut(s)	2727, 5615
BmuI	ACTGGG	1 cut(s)	3505
BpiI	GAAGAC	6 cut(s)	291, 1569, 2773, 4250, 4370, 4510
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
BpmI	CTGGAG	4 cut(s)	192, 1601, 2454, 4175
Bpu10I	CCTNAGC	2 cut(s)	3363, 4881
BpuMI	CCSGG	2 cut(s)	262, 1241
BsaAI	YACGTR	1 cut(s)	4478
BsaBI	GATNNNNATC	1 cut(s)	1144
BsaHI	GRCGYC	1 cut(s)	3800
BsaI	GGTCTC	3 cut(s)	427, 3913, 4599
BsaJI	CCNNGG	9 cut(s)	204, 438, 1122, 1239, 1628, 1997, 3600, 4686, 5598
BsaWI	WCCGGW	2 cut(s)	358, 2688
BsaXI	ACNNNNNCTCC	8 cut(s)	265, 295, 1411, 1441, 2661, 2691, 3429, 3459
Bsc4I	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4227, 4299, 4616
Bse118I	RCCGGY	3 cut(s)	358, 1978, 2688
Bse21I	CCTNAGG	1 cut(s)	3638
Bse3DI	GCAATG	8 cut(s)	2549, 3503, 3999, 4080, 4482, 4836, 5522, 5640
Bse8I	GATNNNNATC	1 cut(s)	1144
BseBI	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4193
BseDI	CCNNGG	9 cut(s)	204, 438, 1122, 1239, 1628, 1997, 3600, 4686, 5598
BseJI	GATNNNNATC	1 cut(s)	1144
BseLI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4227, 4299, 4616
BseMI	GCAATG	8 cut(s)	2549, 3503, 3999, 4080, 4482, 4836, 5522, 5640
BseRI	GAGGAG	7 cut(s)	191, 355, 1509, 1514, 2770, 3160, 5493
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	6 cut(s)	314, 677, 1173, 2592, 2976, 3210
Bsh1236I	CGCG	2 cut(s)	3535, 4858
BshFI	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
BshNI	GGYRCC	3 cut(s)	1005, 1073, 4289
BshTI	ACCGGT	2 cut(s)	358, 2688
BsiHKAI	GWGCWC	6 cut(s)	2797, 3129, 3262, 3746, 5199, 5429
BsiSI	CCGG	6 cut(s)	255, 261, 359, 1241, 1979, 2689
BslFI	GGGAC	3 cut(s)	204, 4136, 4363
BslI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4227, 4299, 4616
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	3 cut(s)	204, 4136, 4363
BsmI	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3321
BsnI	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
Bso31I	GGTCTC	3 cut(s)	427, 3913, 4599
Bsp1286I	GDGCHC	8 cut(s)	614, 2797, 3129, 3262, 3688, 3746, 5199, 5429
Bsp1407I	TGTACA	2 cut(s)	1142, 4456
BspANI	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
BspFNI	CGCG	2 cut(s)	3535, 4858
BspHI	TCATGA	1 cut(s)	5580
BspMAI	CTGCAG	4 cut(s)	463, 1798, 2875, 4867
BspMI	ACCTGC	1 cut(s)	3968
BspOI	GCTAGC	2 cut(s)	2727, 5615
BspPI	GGATC	9 cut(s)	312, 492, 2417, 2721, 2768, 3806, 3842, 3855, 5339
BspQI	GCTCTTC	2 cut(s)	725, 3751
BspT107I	GGYRCC	3 cut(s)	1005, 1073, 4289
BspTI	CTTAAG	3 cut(s)	416, 2996, 3200
BspTNI	GGTCTC	3 cut(s)	427, 3913, 4599
BsrBI	CCGCTC	3 cut(s)	1011, 1613, 5152
BsrDI	GCAATG	8 cut(s)	2549, 3503, 3999, 4080, 4482, 4836, 5522, 5640
BsrFI	RCCGGY	3 cut(s)	358, 1978, 2688
BsrGI	TGTACA	2 cut(s)	1142, 4456
BssAI	RCCGGY	3 cut(s)	358, 1978, 2688
BssECI	CCNNGG	9 cut(s)	204, 438, 1122, 1239, 1628, 1997, 3600, 4686, 5598
BssNI	GRCGYC	1 cut(s)	3800
BssT1I	CCWWGG	3 cut(s)	204, 438, 5598
Bst2UI	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4193
BstACI	GRCGYC	1 cut(s)	3800
BstAFI	CTTAAG	3 cut(s)	416, 2996, 3200
BstAPI	GCANNNNNTGC	2 cut(s)	1805, 4871
BstAUI	TGTACA	2 cut(s)	1142, 4456
BstBAI	YACGTR	1 cut(s)	4478
BstDSI	CCRYGG	4 cut(s)	1122, 1628, 3600, 4686
BstFNI	CGCG	2 cut(s)	3535, 4858
BstH2I	RGCGCY	1 cut(s)	3363
BstHHI	GCGC	6 cut(s)	1623, 3321, 3362, 4416, 4858, 5667
BstNI	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4193
BstNSI	RCATGY	4 cut(s)	646, 2294, 4639, 5501
BstSCI	CCNGG	9 cut(s)	260, 687, 1239, 1368, 1996, 2092, 2196, 2355, 4191
BstSFI	CTRYAG	6 cut(s)	459, 1794, 2365, 2871, 3723, 4863
BstUI	CGCG	2 cut(s)	3535, 4858
BstV2I	GAAGAC	6 cut(s)	291, 1569, 2773, 4250, 4370, 4510
BstXI	CCANNNNNNTGG	1 cut(s)	5605
Bsu36I	CCTNAGG	1 cut(s)	3638
BsuI	GTATCC	4 cut(s)	1237, 4317, 5561, 5653
BsuRI	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
BtgI	CCRYGG	4 cut(s)	1122, 1628, 3600, 4686
BtsI	GCAGTG	5 cut(s)	92, 1806, 2307, 2715, 5724
BveI	ACCTGC	1 cut(s)	3968
CaiI	CAGNNNCTG	7 cut(s)	1700, 1778, 1805, 2093, 3809, 4103, 5321
CciI	TCATGA	1 cut(s)	5580
CfoI	GCGC	6 cut(s)	1623, 3321, 3362, 4416, 4858, 5667
Cfr10I	RCCGGY	3 cut(s)	358, 1978, 2688
Cfr13I	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3634
CseI	GACGC	2 cut(s)	2612, 3789
CsiI	ACCWGGT	1 cut(s)	2092
Csp6I	GTAC	7 cut(s)	1074, 1143, 2522, 2645, 3806, 4457, 4972
CspAI	ACCGGT	2 cut(s)	358, 2688
CviQI	GTAC	7 cut(s)	1074, 1143, 2522, 2645, 3806, 4457, 4972
DraI	TTTAAA	1 cut(s)	912
DrdI	GACNNNNNNGTC	1 cut(s)	1967
DseDI	GACNNNNNNGTC	1 cut(s)	1967
EaeI	YGGCCR	2 cut(s)	2194, 4239
EciI	GGCGGA	1 cut(s)	969
Ecl136II	GAGCTC	4 cut(s)	3127, 3260, 3744, 5427
Eco130I	CCWWGG	3 cut(s)	204, 438, 5598
Eco24I	GRGCYC	6 cut(s)	614, 3129, 3262, 3688, 3746, 5429
Eco31I	GGTCTC	3 cut(s)	427, 3913, 4599
Eco32I	GATATC	1 cut(s)	1359
Eco47I	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3634
Eco53kI	GAGCTC	4 cut(s)	3127, 3260, 3744, 5427
Eco57I	CTGAAG	8 cut(s)	119, 1868, 2355, 3645, 4839, 4869, 4881, 4907
Eco81I	CCTNAGG	1 cut(s)	3638
EcoICRI	GAGCTC	4 cut(s)	3127, 3260, 3744, 5427
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	2206
EcoRII	CCWGG	7 cut(s)	687, 1368, 1996, 2092, 2196, 2355, 4191
EcoRV	GATATC	1 cut(s)	1359
EcoT14I	CCWWGG	3 cut(s)	204, 438, 5598
EcoT22I	ATGCAT	3 cut(s)	2032, 3769, 4894
EcoT38I	GRGCYC	6 cut(s)	614, 3129, 3262, 3688, 3746, 5429
ErhI	CCWWGG	3 cut(s)	204, 438, 5598
Esp3I	CGTCTC	1 cut(s)	3
FalI	AAGNNNNNCTT	2 cut(s)	1847, 1879
FaqI	GGGAC	3 cut(s)	204, 4136, 4363
FauI	CCCGC	2 cut(s)	1871, 4339
FauNDI	CATATG	1 cut(s)	4888
FbaI	TGATCA	3 cut(s)	1702, 2515, 3751
FriOI	GRGCYC	6 cut(s)	614, 3129, 3262, 3688, 3746, 5429
FspI	TGCGCA	1 cut(s)	3320
GlaI	GCGC	6 cut(s)	1622, 3320, 3361, 4415, 4857, 5666
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	4 cut(s)	192, 1601, 2454, 4175
HaeII	RGCGCY	1 cut(s)	3363
HaeIII	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
HapII	CCGG	6 cut(s)	255, 261, 359, 1241, 1979, 2689
HgaI	GACGC	2 cut(s)	2612, 3789
HhaI	GCGC	6 cut(s)	1623, 3321, 3362, 4416, 4858, 5667
Hin1I	GRCGYC	1 cut(s)	3800
Hin6I	GCGC	6 cut(s)	1621, 3319, 3360, 4414, 4856, 5665
HinP1I	GCGC	6 cut(s)	1621, 3319, 3360, 4414, 4856, 5665
HincII	GTYRAC	6 cut(s)	754, 2505, 2814, 3760, 4395, 5221
HindII	GTYRAC	6 cut(s)	754, 2505, 2814, 3760, 4395, 5221
HindIII	AAGCTT	1 cut(s)	4533
HpaI	GTTAAC	1 cut(s)	3760
HpaII	CCGG	6 cut(s)	255, 261, 359, 1241, 1979, 2689
HphI	GGTGA	5 cut(s)	1384, 1948, 2444, 3383, 3962
Hpy99I	CGWCG	3 cut(s)	3009, 4965, 5478
HpyCH4IV	ACGT	5 cut(s)	2953, 3007, 3876, 4271, 4477
HpySE526I	ACGT	5 cut(s)	2953, 3007, 3876, 4271, 4477
Hsp92I	GRCGYC	1 cut(s)	3800
HspAI	GCGC	6 cut(s)	1621, 3319, 3360, 4414, 4856, 5665
KpnI	GGTACC	1 cut(s)	1077
KroI	GCCGGC	1 cut(s)	1978
KroNI	GCCGGC	1 cut(s)	1980
Ksp22I	TGATCA	3 cut(s)	1702, 2515, 3751
KspAI	GTTAAC	1 cut(s)	3760
LguI	GCTCTTC	2 cut(s)	725, 3751
MabI	ACCWGGT	1 cut(s)	2092
MaeII	ACGT	5 cut(s)	2953, 3007, 3876, 4271, 4477
MbiI	CCGCTC	3 cut(s)	1011, 1613, 5152
MfeI	CAATTG	2 cut(s)	2157, 4697
MhlI	GDGCHC	8 cut(s)	614, 2797, 3129, 3262, 3688, 3746, 5199, 5429
MlsI	TGGCCA	2 cut(s)	2196, 4241
MluNI	TGGCCA	2 cut(s)	2196, 4241
MmeI	TCCRAC	6 cut(s)	120, 300, 610, 723, 2041, 3865
Mox20I	TGGCCA	2 cut(s)	2196, 4241
Mph1103I	ATGCAT	3 cut(s)	2032, 3769, 4894
MroNI	GCCGGC	1 cut(s)	1978
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	2 cut(s)	2196, 4241
MslI	CAYNNNNRTG	7 cut(s)	647, 1206, 2517, 4800, 5163, 5294, 5717
Msp20I	TGGCCA	2 cut(s)	2196, 4241
MspA1I	CMGCKG	4 cut(s)	4877, 5099, 5258, 5321
MspCI	CTTAAG	3 cut(s)	416, 2996, 3200
MspI	CCGG	6 cut(s)	255, 261, 359, 1241, 1979, 2689
MspR9I	CCNGG	9 cut(s)	262, 689, 1241, 1370, 1998, 2094, 2198, 2357, 4193
MunI	CAATTG	2 cut(s)	2157, 4697
Mva1269I	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3321
MvaI	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4193
MvnI	CGCG	2 cut(s)	3535, 4858
NaeI	GCCGGC	1 cut(s)	1980
NciI	CCSGG	2 cut(s)	262, 1241
NdeI	CATATG	1 cut(s)	4888
NgoMIV	GCCGGC	1 cut(s)	1978
NheI	GCTAGC	2 cut(s)	2723, 5611
NmeAIII	GCCGAG	1 cut(s)	2098
NmuCI	GTSAC	7 cut(s)	90, 649, 1079, 1718, 1969, 3340, 3829
NsbI	TGCGCA	1 cut(s)	3320
NsiI	ATGCAT	3 cut(s)	2032, 3769, 4894
NspI	RCATGY	4 cut(s)	646, 2294, 4639, 5501
PaeI	GCATGC	1 cut(s)	646
PagI	TCATGA	1 cut(s)	5580
PciI	ACATGT	1 cut(s)	4635
PciSI	GCTCTTC	2 cut(s)	725, 3751
PctI	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3321
PdiI	GCCGGC	1 cut(s)	1980
PdmI	GAANNNNTTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	4616
PfoI	TCCNGGA	1 cut(s)	4191
PinAI	ACCGGT	2 cut(s)	358, 2688
Ppu21I	YACGTR	1 cut(s)	4478
PpuMI	RGGWCCY	1 cut(s)	233
PscI	ACATGT	1 cut(s)	4635
PshBI	ATTAAT	1 cut(s)	3069
PsiI	TTATAA	1 cut(s)	1206
Psp124BI	GAGCTC	4 cut(s)	3129, 3262, 3746, 5429
Psp1406I	AACGTT	1 cut(s)	4271
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	7 cut(s)	687, 1368, 1996, 2092, 2196, 2355, 4191
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	7 cut(s)	687, 1368, 1996, 2092, 2196, 2355, 4191
PspPI	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3634
PspPPI	RGGWCCY	1 cut(s)	233
PstI	CTGCAG	4 cut(s)	463, 1798, 2875, 4867
PstNI	CAGNNNCTG	7 cut(s)	1700, 1778, 1805, 2093, 3809, 4103, 5321
PvuII	CAGCTG	3 cut(s)	4877, 5258, 5321
RsaI	GTAC	7 cut(s)	1075, 1144, 2523, 2646, 3807, 4458, 4973
RsaNI	GTAC	7 cut(s)	1074, 1143, 2522, 2645, 3806, 4457, 4972
RseI	CAYNNNNRTG	7 cut(s)	647, 1206, 2517, 4800, 5163, 5294, 5717
SacI	GAGCTC	4 cut(s)	3129, 3262, 3746, 5429
SapI	GCTCTTC	2 cut(s)	725, 3751
Sau96I	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3634
ScrFI	CCNGG	9 cut(s)	262, 689, 1241, 1370, 1998, 2094, 2198, 2357, 4193
SduI	GDGCHC	8 cut(s)	614, 2797, 3129, 3262, 3688, 3746, 5199, 5429
SexAI	ACCWGGT	1 cut(s)	2092
SfcI	CTRYAG	6 cut(s)	459, 1794, 2365, 2871, 3723, 4863
SinI	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3634
SmiMI	CAYNNNNRTG	7 cut(s)	647, 1206, 2517, 4800, 5163, 5294, 5717
SpeI	ACTAGT	2 cut(s)	1490, 5413
SphI	GCATGC	1 cut(s)	646
SspI	AATATT	1 cut(s)	3085
SstI	GAGCTC	4 cut(s)	3129, 3262, 3746, 5429
StyD4I	CCNGG	9 cut(s)	260, 687, 1239, 1368, 1996, 2092, 2196, 2355, 4191
StyI	CCWWGG	3 cut(s)	204, 438, 5598
TaiI	ACGT	5 cut(s)	2956, 3010, 3879, 4274, 4480
TatI	WGTACW	3 cut(s)	1142, 2644, 4456
TauI	GCSGC	3 cut(s)	3538, 4366, 4627
TseFI	GTSAC	7 cut(s)	90, 649, 1079, 1718, 1969, 3340, 3829
Tsp45I	GTSAC	7 cut(s)	90, 649, 1079, 1718, 1969, 3340, 3829
TspGWI	ACGGA	5 cut(s)	1139, 1645, 3647, 3770, 5337
Van91I	CCANNNNNTGG	1 cut(s)	4616
Vha464I	CTTAAG	3 cut(s)	416, 2996, 3200
VpaK11BI	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3634
VspI	ATTAAT	1 cut(s)	3069
XbaI	TCTAGA	1 cut(s)	2035
XceI	RCATGY	4 cut(s)	646, 2294, 4639, 5501
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3510, 3585
XmnI	GAANNNNTTC	1 cut(s)	274
Zsp2I	ATGCAT	3 cut(s)	2032, 3769, 4894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.