Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Forward (+)

46456726 .. 46459922

Gene Structure 3197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0313200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGGCAACTACTGAGGTCCTTCACGAGGCTCGGAGGTGTTAGGAGTTACAGCGCCGTAAAAAAGGACCTTCGGATTGAGGGTGTTAAGCATGCCATAGCTGTTGCTTCTGGTAAAGGCGGTGTGGGCAAGTCCACCACTGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGTGGAATGAAGGTCGGCTTGCTTGATGCCGATGTATATGGACCAAATGTTCCGATCATGATGAAGCTCGAAGGAAAGCCAGAAGTGACCAAAGATAAAAAAATGATTCCAATAGAGAGCTATGGAATCAAGTGTATGTCGATTGGACTTCTTGTGGATAAGGATGCACCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAAAAAATGACAAGGGGGGTTGACTGGGGAAATCTTGATATTCTTGTGGTAGACATGCCTCCTGGCACTGGTGATGCTCATATAACTGTATCCCAAAGGCTGCAATTATCTGGTGCATTGATTGTTTCAACACCTCAAGATGTTGCACTAATGGATGCTCGCAGAGGAATTAATATGTTCTCTAAAGTTGAAGTGCCGATTTTGGGGATTGTTGAGAACATGAGCTGTTTTAAGTGTCCAAACTGTGCTGAACGATGGTTCATCTTTGGGGAAGGAGGATCTCGTAAGACGGCAGCAGAGATGGGAATAGAAGTTGCTGGTGAGATACCATTAGAACTGGGGATCAGAAAAGGCTCTGATGACGGTGTCCCAATAGTAATATCAGCTCCTGATTCTGATGTCTCGAAAGCATATATTGAGGTGGCTCAGAAAGTTGTCAGCAGACTTGAGGAATTATCAAAGGAACAACATTCACGTCCTGAGATTTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

291

Amino Acids

31.26

Weight (kDa)

8.51

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	29 - 272	2.7e-100	NUBPL iron-transfer P-loop NTPase
MipZ	PF09140	31 - 91	1.8e-07	ATPase MipZ
AAA_31	PF13614	32 - 70	1.1e-08	AAA domain
CbiA	PF01656	33 - 200	9e-14	CobQ/CobB/MinD/ParA nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	667, 731
AfiI	CCNNNNNNNGG	3 cut(s)	27, 449, 584
AgsI	TTSAA	3 cut(s)	383, 510, 572
AjiI	CACGTC	1 cut(s)	857
AjnI	CCWGG	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	5 cut(s)	101, 241, 294, 606, 767
AluI	AGCT	5 cut(s)	101, 241, 294, 606, 767
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	787
AlwI	GGATC	2 cut(s)	667, 731
AlwNI	CAGNNNCTG	1 cut(s)	770
ApeKI	GCWGC	2 cut(s)	481, 674
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	4 cut(s)	18, 67, 215, 359
AsuHPI	GGTGA	2 cut(s)	464, 713
AvaII	GGWCC	4 cut(s)	18, 67, 215, 359
BauI	CACGAG	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	468, 686
BccI	CCATC	2 cut(s)	630, 676
BceAI	ACGGC	2 cut(s)	41, 687
BciT130I	CCWGG	1 cut(s)	444
BciVI	GTATCC	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	787
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	482, 675
BlsI	GCNGC	2 cut(s)	483, 676
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	4 cut(s)	18, 67, 215, 359
BmgBI	CACGTC	1 cut(s)	857
BmgT120I	GGNCC	4 cut(s)	18, 67, 215, 359
BmrFI	CCNGG	1 cut(s)	444
BmrI	ACTGGG	2 cut(s)	415, 728
BmsI	GCATC	4 cut(s)	190, 328, 445, 526
BmuI	ACTGGG	2 cut(s)	415, 728
BpuEI	CTTGAG	2 cut(s)	501, 848
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 449, 584
Bse1I	ACTGG	3 cut(s)	410, 454, 723
BseBI	CCWGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	343, 541
BseLI	CCNNNNNNNGG	3 cut(s)	27, 449, 584
BseMII	CTCAG	3 cut(s)	5, 821, 852
BseNI	ACTGG	3 cut(s)	410, 454, 723
BseXI	GCAGC	2 cut(s)	468, 686
BsiHKAI	GWGCWC	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	3 cut(s)	27, 449, 584
BsmAI	GTCTC	1 cut(s)	787
BsmFI	GGGAC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	228, 659, 723
BspACI	CCGC	1 cut(s)	120
BspCNI	CTCAG	3 cut(s)	6, 820, 853
BspHI	TCATGA	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	667, 731
BsrI	ACTGG	3 cut(s)	410, 454, 723
BssMI	GATC	3 cut(s)	228, 659, 723
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	469, 626, 746
BstC8I	GCNNGC	3 cut(s)	93, 194, 541
BstDEI	CTNAG	3 cut(s)	14, 807, 861
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	343, 541
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	231, 662, 726
BstMAI	GTCTC	1 cut(s)	787
BstMBI	GATC	3 cut(s)	228, 659, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	2 cut(s)	95, 439
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	468, 686
BstX2I	RGATCY	1 cut(s)	659
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	659
BsuI	GTATCC	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	857
BtsCI	GGATG	2 cut(s)	343, 541
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 447
Cac8I	GCNNGC	3 cut(s)	93, 194, 541
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	4 cut(s)	18, 67, 215, 359
CviAII	CATG	4 cut(s)	92, 232, 436, 601
DdeI	CTNAG	3 cut(s)	14, 807, 861
DpnI	GATC	3 cut(s)	230, 661, 725
DpnII	GATC	3 cut(s)	228, 659, 723
Eco47I	GGWCC	4 cut(s)	18, 67, 215, 359
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoO109I	RGGNCCY	3 cut(s)	18, 67, 359
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	4 cut(s)	95, 235, 439, 604
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	4 cut(s)	91, 231, 435, 600
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	482, 675
FokI	GGATG	2 cut(s)	350, 548
Fsp4HI	GCNGC	2 cut(s)	482, 675
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	482, 675
HaeII	RGCGCY	1 cut(s)	57
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	95, 235, 439, 604
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	280, 300, 773
HphI	GGTGA	2 cut(s)	464, 713
Hpy166II	GTNNAC	3 cut(s)	135, 403, 433
Hpy188I	TCNGA	7 cut(s)	35, 75, 228, 728, 739, 778, 810
Hpy188III	TCNNGA	8 cut(s)	25, 232, 380, 416, 518, 770, 784, 860
Hpy8I	GTNNAC	3 cut(s)	135, 403, 433
HpyAV	CCTTC	5 cut(s)	31, 80, 178, 239, 647
HpyCH4III	ACNGT	3 cut(s)	469, 626, 746
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	6 cut(s)	143, 161, 341, 484, 497, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	3 cut(s)	14, 807, 861
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	4 cut(s)	95, 235, 439, 604
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	228, 659, 723
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	2 cut(s)	468, 686
LweI	GCATC	4 cut(s)	190, 328, 445, 526
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	2 cut(s)	47, 259
MalI	GATC	3 cut(s)	230, 661, 725
MboI	GATC	3 cut(s)	228, 659, 723
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	3 cut(s)	485, 549, 833
MseI	TTAA	4 cut(s)	87, 147, 552, 612
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	3 cut(s)	228, 659, 723
NlaIII	CATG	4 cut(s)	95, 235, 439, 604
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	2 cut(s)	95, 439
PaeI	GCATGC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	280, 300, 773
PflFI	GACNNNGTC	1 cut(s)	746
PkrI	GCNGC	2 cut(s)	483, 676
PpuMI	RGGWCCY	3 cut(s)	18, 67, 359
PshBI	ATTAAT	1 cut(s)	552
Psp5II	RGGWCCY	3 cut(s)	18, 67, 359
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspPI	GGNCC	4 cut(s)	18, 67, 215, 359
PspPPI	RGGWCCY	3 cut(s)	18, 67, 359
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	659
PsyI	GACNNNGTC	1 cut(s)	746
SaqAI	TTAA	4 cut(s)	87, 147, 552, 612
SatI	GCNGC	2 cut(s)	482, 675
Sau3AI	GATC	3 cut(s)	228, 659, 723
Sau96I	GGNCC	4 cut(s)	18, 67, 215, 359
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	4 cut(s)	190, 328, 445, 526
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	4 cut(s)	18, 67, 215, 359
SmlI	CTYRAG	2 cut(s)	516, 827
SmoI	CTYRAG	2 cut(s)	516, 827
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	3 cut(s)	485, 549, 833
SsiI	CCGC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	469, 626, 746
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	3 cut(s)	243, 314, 785
TasI	AATT	3 cut(s)	485, 549, 833
TfiI	GAWTC	3 cut(s)	280, 300, 773
Tru1I	TTAA	4 cut(s)	87, 147, 552, 612
Tru9I	TTAA	4 cut(s)	87, 147, 552, 612
TscAI	CASTG	2 cut(s)	145, 454
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	481, 674
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	3 cut(s)	197, 251, 631
TspRI	CASTG	2 cut(s)	145, 454
Tth111I	GACNNNGTC	1 cut(s)	746
VpaK11BI	GGWCC	4 cut(s)	18, 67, 215, 359
VspI	ATTAAT	1 cut(s)	552
XagI	CCTNNNNNAGG	1 cut(s)	25
XceI	RCATGY	2 cut(s)	95, 439
XmiI	GTMKAC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.