Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Reverse (-)

61734763 .. 61742051

Gene Structure 7289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG438600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5685 bp

ATGGATGGAGACGAGAAGAGGTCGGGGTTTAAGAAGAGATCGAAGTTAATGGAGGTTAATCACAATTCGGATGACGATGAGCCGATTGGGTCACTGCTGAAGAAGAGGCAGCGAAACCCTAAGAAGGTTAAGCCGGGGTTGGAGGGCGAAAGGGGCAAGAAGGTTGAGGCTGGAGAGGAGGATTTGGGGGGACTGGATGATACCTTGGCAAGTTTTAGGAAGAAGCTCAAGGGTCCTAAGAGGGATTCTGGGGCCGGAACCGGGAGGGGAAGGAGTTCTAGTTTGGATGTTGTGCAGTCTTCGGATCAGGATGGGGGGTCGGATGCAAAATCAGTGTCGAGGAGTATGGAGAAAGGTCCGGTCATCGATGATGATGGAACCGATGTGATTATGGATGTAGAGGTGGAAAACAGGCTTAAGGGAAAGGGAAAGAGACCCAAGGTTTCAGGTCTGGTATCTGCGGAGCGTTCTAATAGCTCTTTGGATCATCATTCGCAAGATTCATTATCGGCATTTTTTCAGAAGGCACAGTCTGGTGTTACTAAGAAGTCTCATCCCTCTTTGAGTCTTAGAGAGAAGAGTGGTTCTCTGGATTTGGAGGATGGACTGAGCCCTAGTTCAGAAGGTGTTGGAGGAAATAGCATGCCTGTGGCTGTGCAGAGACATAGTTCTGTTTCAAAACTGAACCAGGAAAATCCAAGATTTGAAGATAGTTTGCTGTTCGATTCTGGTTTTAATTCGTTGGATTCAGTCAACAATCAGTATAAGATAGAAGAACAAAACAGATTTTGCCAAGATTCTGACTGCAACAGACAGAATCAAGAGAGATCTCAAGGACTTTATTCTATTCCAGATGACATGACGAGACTTGAGGATAGAAAGAATGAACCCACAGTGGATTATTCTGGTTTAAATCTTCAAGAGGAACTATGTAGCTTGGATAGATCTAATGGCGGAGATAGCCAGCACTTACAGAAAATTCAAACTTTTGAGAACCGACTGAGGCACCGCTCTGTGATAAACTCAAACACTCTAACGATTTGTGAACAGAAGGGGGAAATGCTTGAGGTCGGTACCAGTGACTCCAAAGGGGGCTTTCCTGATGCTTTGTCCATTCAGTCCACGGATGTTCTAGCTAGATGTACATCAGGTGCAGACTGTGAAATATCTTCTTCAACTGGAAAAGAAATTCCGATGCCTCATTTTAATGATGAGTTACTGAACAAATCTAACTTTGCCCCGGATACACTAAAGAGGGAAGAAACTCCTTGTAATCGTGTAATTGCTTACACTGAGGGGCAAGATCTTGCTTCCAGTCCTTTACATGAAGAGAATGCCATGATAATTGATTGTCAGATATCTTCAATCCAGGTGAGTCATCAAGCGAAAGCCTTGCAAACTGCCTCAGTTCAGAAGGGGAGCTATTGTGAAGATTTATCTTCTGATGAAGCATCAAAAGAGAGAATTATTCCAAAACATGATTATATTACTAGTAATGAGGAGGTTGATGGAGCTTCTCCTCCTTTATATGCAACAGTAGATGAGAATGAGAGTTTCCCAGAAGACACAGTATCTCTACCTGATATTGAAAACAGAGATGGTAAGCTATCCGCTCTCCAGCGCATACCACGGAATGCTAGGAAACGCAGGCATGGAGACATGGCTTATGAGGGGGATGTTGATTGGGAGATCTCAGTAACTGATCAAGGATTGGATAGTGACAATTCAATTAGAGCAAGAGTGAAGTTTGATTCCTCTTCAAGTATTGGCACAGAAGCTGAAAGTGGTGGGGCTGCAGCAGTGTCTGCTGGTCTAAAAGCTCACGCAGTTGGTCCTGTTGAGAAGATTAAATTCAAGGAGATCTTGAAGCGCAGAGGCGGGCTTCAGGATTACTTGGAATGCAGGAATCAGATCTTAGCTCTGTGGAGCAAAGATGTTAGTCGAATTTTGCCTCTCACCGACTGTGGGGTCACAGAGCCGGCTTGTGTGAATGAACCTGGGCGTGCCTCCCTAATTAGGGATATTTATGCATTTCTAGATCTCAGTGGTTATATAAATGTTGGAATTGCTGCTGAGAAGGATAAAGCAGAACCTGGTTCTAAGCATGACTATAAAATTGTCAGAGAAAAACCTTTTGAGGAAATTTCTGGGGTTTCAATTGCTGACTCAGAGGATGGGGTTTCCTTCATCATTGGCCAGGTTAAGAATTCAAAAACTTCCACCGATGCTAAGAATGGAGTTACATTTAATAGCGAAAACTTGACTGAGGGAGCCACAAAAGACAATGGGCATGTTGAGGCAGTGGCATTGGAATTGTTTGATGCGAAACATCCTGAAGAATGCCAAGCTGATTACCTGGAAAACTGTAGTGCTGATGCAAGGTTCCAAAGTCGATTGGACAATATGGATGTTTCTAGTAGCGATCCCTCTGGTGAGACATTGGATGGTGGAGTCATCCCTGTTGTAACTCCAGAGATAAAGAATGAATCACAGAGTATTCAGTCAACGCCACATGATCATGTACCGAGTAATGATACCCTGCAATGTGGTCCAGAAGTCAGAAAGGAAATCATTGTCATAGGTGCTGGTCCTGCTGGCTTAACTGCTGCACGCCACTTGCAGCGTCAGGGGTTTTCAGTCAATGTACTTGAAGCTAGGAGTCGAATAGGAGGTCGTGTTTATACAGACCGGTCATCTCTATCAGTTGCAGTGGATCTTGGTGCTAGCATTATCACTGGTGTCGAGGCTGATTGGGCAACTGAAAGAAGACCCGATCCCTCCTCATTGGTTTGTGCTCAGTTGGGCCTTGAGTTGACTGTATTAAACAGTGATTGCCCTCTTTATGATATTGAAACAGGTCAAAAAGTTCCTGCAGATCTGGATGAGGCATTGGAAGCAGAGTTCAACAGCCTTCTTGATGACATGGTATTGCTTGTAGCACAGAAGGGAGAACGTGCAGCAAGAATGTCTCTTGAGGAAGGTTTTGAATATGTCCTTAAGAGGCGACGTATGGCACAATCAGGGAGTGCTAAAGAAAAAGAATTGCATGGTTCAAGGGATGGTTTGATTAATGCTAGAACAAATATTGATGGTAGAGTTGCTATTGATGGTAGAGTTGCTGATAAAAGTTATTGTAAGCAAGAGCTCTTGAGTCCTCTTGAGAGGAGGGTTATGGATTGGCATTTTGCTAATTTGGAGTATGGTTGTGCAGCTCCGCTTAAGGAGGTATCTCTACCCCATTGGAACCAAGATGATGTATATGGTGGCTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGCACTGTTGTTGAGTCTCTAGGAGATGGACTGCGCATTCACTTGAATCATGTAGTCACTGATATTTCGTATGGCGCTGAGGATGGTGAATTGAATAATAACCAGTGTAACAAAGTCAAAGTTTCCACATCAAATGGGAGTATCTTTTGTGGAGATGCAGTCTTGATTACAGTGCCTCTTGGGTGCTTAAAAGCAGAAACCATAAAGTTTTCTCCACCATTGCCCCAGTGGAAACATTCTTCTATCACGCGGCTTGGATTTGGCGTTCTTAATAAAGTAGTTTTGGAATTTCCAGATGTCTTTTGGGATGACACCGTGGACTACTTTGGAGCAACTGCTGAAGAAACGGACCTGAGGGGTCAGTGCTTTATGTTCTGGAATATCAAGAAAACTGTTGGGGCTCCCGTTCTTATAGCTTTAGTGGTTGGTAAGGCAGCTATAGAAGGCCAAAATATGAGCTCTTCTGATCATGTTAACCATGCATTAGTGGCTCTCCGTAAATTGTTTGGAGAGGCATCAGTACCTGATCCAGTTGCATCAGTTGTGACAGATTGGGGCAGGGATCCTTTCAGCTATGGTGCATACTCATACGTTGCTGTCGGAGCTTCTGGAAAAGACTATGACATACTAGGGAGACCTGTTGATAACTGCCTATTTTTCGCTGGTGAAGCTACCTGCAAGGAGCATCCCGACACTGTTGGTGGTGCAATGATGAGTGGGCTTCGAGAGTCGGTGCGTATAATTGACATACTGACAACTGGAAATGATTACACAGCAGAAGCAGAAGCAATGGAGTCGATACAGAGACAGTCAGCCTCTGAAAAGGATGAAGTTTGGGACATAACAAGGAGACTTGATGCAGTTGAACTTTCCGATGTCCTTTACAAGAACAGGGAAGCCTTACTCCAGGACTTGTTCTTTAGTGCAAAAACCACCAAAGGAAGGTTGCATCTGGCCAAAGAGTTATTGAGTCTTCCTGCTGAAACGTTGAAGTCCTTTGCTGGCACCAAAGAGGGGCTAACCACACTTAACTCATGGATACTGGACTCAATGGGGAAAGCGGGGACTCAACTCTTGCGGCATTGTGTTCGTCTTCTTGTTCTTGTGTCAACAGACCTACTGGCTGTGCGCTTGTCTGGCATTGGGAAAACTGTAAGAGAGAAAGTTTGTGTACATACTAGCCGTGATATACGCGCCATTGCAAGTCAGCTAGTTAGTGTGTGGCTTGAAGTCTTCCGCAGAGAAAAAGCTTCTAATGGAGGATTGAAATTGTCAAGGCAAGCCAATGGTGTAGATTCATTGAAGAGAAAAACAGTCAGAGACCCATCTTCTGGAAAGCCGCCACTACACATGTATCATGGTGCTTTTGAGCATAAAGGAAGTTTACAGGATTCTGCATCCACGGGAAGCCAATTGCCTCCGAATCCAAATGTGAAGAAATTGAATGGCAAAGCCATTAAACTTGAAACAGCAAATTCCTCAAGATTTGGAGGTTCAACAGGCAGACCACATAATGATGACTTTGCTATGACTGAAGAAGAAAGAGCTGCCATTGCTGCTGCTGAAGCAGCGCGAGCTGCAGCACTTGCAGCTGCTAAGGCATATGCTTCTTCAGAAGCCAAGAGCAGTTCGTTGCTTCAGCTTCCTAAGATTCCCTCGTTTCATAAATTTGCTCGACGGGAGCAGTACGCTCAAATGGATGAGTATGATTTTAGGAGGAAGTGGTCTGGTGGTGTTTTGGGTAGAGAAGATTGCATATCTGAAATTGACTCTAGGAACTGCAAAGTAAGGAACTGGTCTGTTGATTTCTCCGCTGCTTGTGTCAATCTTGACAGTTCAAGAAGGTCAGTTGATAACCTCTCAGAGCGGAGCCATCCCAATGAGATCGCTAGTCAGTTGAATTTCCGAGAGCACTCAGGGGAGAGTGCTGCTGTTGACAGTAGTATCTATACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGGGTAAAAGACTATCATGCCATTGAGATGTGGCAATCTCAAGCAGCGGCAGCTGACCCTGATTTCTTCCATCCTGATCCGTATGTAAAGGATGAGGAAGATTCAAATACAACTTCTAAAGGACTAAGCTGGAAGCATGAAGGACTAGTAAATGAGAGCTCTGTTTCGCAAGTTACTGTAAACAGGGGGTCATCGAAAAATCATCGTCGAGGAGCAGACCAAATTAAACATGCAGTTGTTGATTATGTGGCATCATTGCTTATGCCCCTCTATAAAGCTAAAAAGATTGATAGAGAGGGATACAAGTCAATCATGAAGAAAAGTGCTACCAAGATTCGTGCCTTTGTGGATAAATTGATTGAGAAGCACATGGCAGTGAAGCCTGTTGTGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

1894

Amino Acids

207.0

Weight (kDa)

5.56

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	608 - 686	2.5e-12	SWIRM domain
Thi4	PF01946	855 - 893	7.4e-06	Thi4 family
DAO	PF01266	857 - 891	2.2e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	859 - 915	3.9e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	865 - 1349	7.8e-86	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1967
Acc16I	TGCGCA	1 cut(s)	3338
Acc36I	ACCTGC	1 cut(s)	3986
Acc65I	GGTACC	1 cut(s)	1073
AccB1I	GGYRCC	3 cut(s)	1005, 1073, 4307
AccB7I	CCANNNNNTGG	1 cut(s)	4634
AccBSI	CCGCTC	3 cut(s)	1011, 1613, 5170
AccII	CGCG	3 cut(s)	3553, 4497, 4876
AclI	AACGTT	1 cut(s)	4289
AclWI	GGATC	9 cut(s)	312, 492, 2417, 2721, 2768, 3824, 3860, 3873, 5357
AcoI	YGGCCR	2 cut(s)	2194, 4257
AcuI	CTGAAG	8 cut(s)	119, 1868, 2355, 3663, 4857, 4887, 4899, 4925
AfaI	GTAC	7 cut(s)	1075, 1144, 2523, 2646, 3825, 4476, 4991
AfiI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4245, 4317, 4634
AflII	CTTAAG	3 cut(s)	416, 2996, 3218
AflIII	ACRYGT	1 cut(s)	4653
AgeI	ACCGGT	1 cut(s)	2688
AhlI	ACTAGT	2 cut(s)	1490, 5431
AjnI	CCWGG	7 cut(s)	687, 1368, 1996, 2092, 2196, 2355, 4209
AloI	GAACNNNNNNTCC	4 cut(s)	2885, 2917, 3552, 3584
Alw21I	GWGCWC	6 cut(s)	2797, 3147, 3280, 3764, 5217, 5447
AlwI	GGATC	9 cut(s)	312, 492, 2417, 2721, 2768, 3824, 3860, 3873, 5357
AlwNI	CAGNNNCTG	6 cut(s)	1700, 1778, 1805, 2093, 3827, 4121
AoxI	GGCC	5 cut(s)	252, 2194, 2803, 3748, 4257
ArsI	GACNNNNNNTTYG	4 cut(s)	320, 352, 2656, 2688
AseI	ATTAAT	1 cut(s)	3069
AsiGI	ACCGGT	1 cut(s)	2688
Asp700I	GAANNNNTTC	1 cut(s)	274
Asp718I	GGTACC	1 cut(s)	1073
AspLEI	GCGC	7 cut(s)	1623, 1872, 3339, 3380, 4434, 4499, 4876
AspS9I	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3652
AsuC2I	CCSGG	3 cut(s)	135, 262, 1241
AsuHPI	GGTGA	5 cut(s)	1384, 1948, 2444, 3401, 3980
AsuNHI	GCTAGC	1 cut(s)	2723
AvaII	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3652
AxyI	CCTNAGG	1 cut(s)	3656
BaeI	ACNNNNGTAYC	4 cut(s)	4640, 4673, 5230, 5263
BalI	TGGCCA	2 cut(s)	2196, 4259
BamHI	GGATCC	1 cut(s)	3865
BanI	GGYRCC	3 cut(s)	1005, 1073, 4307
BanII	GRGCYC	6 cut(s)	614, 3147, 3280, 3706, 3764, 5447
BbsI	GAAGAC	6 cut(s)	291, 1569, 2773, 4268, 4388, 4528
Bbv12I	GWGCWC	6 cut(s)	2797, 3147, 3280, 3764, 5217, 5447
BbvCI	CCTCAGC	1 cut(s)	3381
BceAI	ACGGC	1 cut(s)	4470
BcgI	CGANNNNNNTGC	6 cut(s)	1375, 1409, 4080, 4114, 4373, 4407
BciT130I	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4211
BciVI	GTATCC	3 cut(s)	1237, 4335, 5579
BclI	TGATCA	3 cut(s)	1702, 2515, 3769
BcnI	CCSGG	3 cut(s)	135, 262, 1241
BcuI	ACTAGT	2 cut(s)	1490, 5431
BfmI	CTRYAG	5 cut(s)	1794, 2365, 2871, 3741, 4881
BfoI	RGCGCY	1 cut(s)	3381
BfrI	CTTAAG	3 cut(s)	416, 2996, 3218
BfuAI	ACCTGC	1 cut(s)	3986
BfuI	GTATCC	3 cut(s)	1237, 4335, 5579
BglII	AGATCT	8 cut(s)	827, 944, 1303, 1689, 1860, 1911, 2038, 2875
Bme18I	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3652
BmgT120I	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3652
BmrI	ACTGGG	1 cut(s)	3523
BmtI	GCTAGC	1 cut(s)	2727
BmuI	ACTGGG	1 cut(s)	3523
BpiI	GAAGAC	6 cut(s)	291, 1569, 2773, 4268, 4388, 4528
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
BpmI	CTGGAG	4 cut(s)	192, 1601, 2454, 4193
Bpu10I	CCTNAGC	2 cut(s)	3381, 4899
BpuMI	CCSGG	3 cut(s)	135, 262, 1241
Bsa29I	ATCGAT	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	1144
BsaI	GGTCTC	3 cut(s)	427, 3931, 4617
BsaJI	CCNNGG	9 cut(s)	134, 204, 438, 1122, 1239, 1628, 1997, 3618, 4704
BsaWI	WCCGGW	2 cut(s)	358, 2688
BsaXI	ACNNNNNCTCC	8 cut(s)	265, 295, 1411, 1441, 2661, 2691, 3447, 3477
Bsc4I	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4245, 4317, 4634
Bse118I	RCCGGY	2 cut(s)	1978, 2688
Bse21I	CCTNAGG	1 cut(s)	3656
Bse3DI	GCAATG	7 cut(s)	2549, 3521, 4017, 4098, 4500, 4854, 5540
Bse8I	GATNNNNATC	1 cut(s)	1144
BseBI	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4211
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	9 cut(s)	134, 204, 438, 1122, 1239, 1628, 1997, 3618, 4704
BseJI	GATNNNNATC	1 cut(s)	1144
BseLI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4245, 4317, 4634
BseMI	GCAATG	7 cut(s)	2549, 3521, 4017, 4098, 4500, 4854, 5540
BseRI	GAGGAG	7 cut(s)	191, 355, 1509, 1514, 2770, 3178, 5511
BsgI	GTGCAG	6 cut(s)	314, 677, 1173, 2592, 2976, 3228
Bsh1236I	CGCG	3 cut(s)	3553, 4497, 4876
BshFI	GGCC	5 cut(s)	254, 2196, 2805, 3750, 4259
BshNI	GGYRCC	3 cut(s)	1005, 1073, 4307
BshTI	ACCGGT	1 cut(s)	2688
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	6 cut(s)	2797, 3147, 3280, 3764, 5217, 5447
BsiSI	CCGG	7 cut(s)	134, 255, 261, 359, 1241, 1979, 2689
BslFI	GGGAC	3 cut(s)	204, 4154, 4381
BslI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4245, 4317, 4634
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	3 cut(s)	204, 4154, 4381
BsmI	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3339
BsnI	GGCC	5 cut(s)	254, 2196, 2805, 3750, 4259
Bso31I	GGTCTC	3 cut(s)	427, 3931, 4617
Bsp1286I	GDGCHC	8 cut(s)	614, 2797, 3147, 3280, 3706, 3764, 5217, 5447
Bsp1407I	TGTACA	2 cut(s)	1142, 4474
BspANI	GGCC	5 cut(s)	254, 2196, 2805, 3750, 4259
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	3 cut(s)	3553, 4497, 4876
BspHI	TCATGA	1 cut(s)	5598
BspMAI	CTGCAG	3 cut(s)	1798, 2875, 4885
BspMI	ACCTGC	1 cut(s)	3986
BspOI	GCTAGC	1 cut(s)	2727
BspPI	GGATC	9 cut(s)	312, 492, 2417, 2721, 2768, 3824, 3860, 3873, 5357
BspQI	GCTCTTC	1 cut(s)	3769
BspT107I	GGYRCC	3 cut(s)	1005, 1073, 4307
BspTI	CTTAAG	3 cut(s)	416, 2996, 3218
BspTNI	GGTCTC	3 cut(s)	427, 3931, 4617
BsrBI	CCGCTC	3 cut(s)	1011, 1613, 5170
BsrDI	GCAATG	7 cut(s)	2549, 3521, 4017, 4098, 4500, 4854, 5540
BsrFI	RCCGGY	2 cut(s)	1978, 2688
BsrGI	TGTACA	2 cut(s)	1142, 4474
BssAI	RCCGGY	2 cut(s)	1978, 2688
BssECI	CCNNGG	9 cut(s)	134, 204, 438, 1122, 1239, 1628, 1997, 3618, 4704
BssT1I	CCWWGG	2 cut(s)	204, 438
Bst2UI	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4211
Bst6I	CTCTTC	8 cut(s)	11, 29, 98, 572, 1323, 1762, 3769, 4601
BstAFI	CTTAAG	3 cut(s)	416, 2996, 3218
BstAPI	GCANNNNNTGC	2 cut(s)	1805, 4889
BstAUI	TGTACA	2 cut(s)	1142, 4474
BstDSI	CCRYGG	4 cut(s)	1122, 1628, 3618, 4704
BstFNI	CGCG	3 cut(s)	3553, 4497, 4876
BstH2I	RGCGCY	1 cut(s)	3381
BstHHI	GCGC	7 cut(s)	1623, 1872, 3339, 3380, 4434, 4499, 4876
BstNI	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4211
BstNSI	RCATGY	4 cut(s)	646, 2294, 4657, 5519
BstSFI	CTRYAG	5 cut(s)	1794, 2365, 2871, 3741, 4881
BstUI	CGCG	3 cut(s)	3553, 4497, 4876
BstV2I	GAAGAC	6 cut(s)	291, 1569, 2773, 4268, 4388, 4528
Bsu15I	ATCGAT	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	3656
BsuI	GTATCC	3 cut(s)	1237, 4335, 5579
BsuRI	GGCC	5 cut(s)	254, 2196, 2805, 3750, 4259
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	4 cut(s)	1122, 1628, 3618, 4704
BtsI	GCAGTG	5 cut(s)	92, 1806, 2307, 2715, 5667
BveI	ACCTGC	1 cut(s)	3986
CaiI	CAGNNNCTG	6 cut(s)	1700, 1778, 1805, 2093, 3827, 4121
CciI	TCATGA	1 cut(s)	5598
CfoI	GCGC	7 cut(s)	1623, 1872, 3339, 3380, 4434, 4499, 4876
Cfr10I	RCCGGY	2 cut(s)	1978, 2688
Cfr13I	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3652
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	1 cut(s)	2612
CsiI	ACCWGGT	1 cut(s)	2092
Csp6I	GTAC	7 cut(s)	1074, 1143, 2522, 2645, 3824, 4475, 4990
CspAI	ACCGGT	1 cut(s)	2688
CviQI	GTAC	7 cut(s)	1074, 1143, 2522, 2645, 3824, 4475, 4990
DraI	TTTAAA	1 cut(s)	912
DrdI	GACNNNNNNGTC	1 cut(s)	1967
DseDI	GACNNNNNNGTC	1 cut(s)	1967
EaeI	YGGCCR	2 cut(s)	2194, 4257
Eam1104I	CTCTTC	8 cut(s)	11, 29, 98, 572, 1323, 1762, 3769, 4601
EarI	CTCTTC	8 cut(s)	11, 29, 98, 572, 1323, 1762, 3769, 4601
EciI	GGCGGA	1 cut(s)	969
Ecl136II	GAGCTC	4 cut(s)	3145, 3278, 3762, 5445
Eco130I	CCWWGG	2 cut(s)	204, 438
Eco24I	GRGCYC	6 cut(s)	614, 3147, 3280, 3706, 3764, 5447
Eco31I	GGTCTC	3 cut(s)	427, 3931, 4617
Eco32I	GATATC	1 cut(s)	1359
Eco47I	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3652
Eco53kI	GAGCTC	4 cut(s)	3145, 3278, 3762, 5445
Eco57I	CTGAAG	8 cut(s)	119, 1868, 2355, 3663, 4857, 4887, 4899, 4925
Eco81I	CCTNAGG	1 cut(s)	3656
EcoICRI	GAGCTC	4 cut(s)	3145, 3278, 3762, 5445
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	2206
EcoRII	CCWGG	7 cut(s)	687, 1368, 1996, 2092, 2196, 2355, 4209
EcoRV	GATATC	1 cut(s)	1359
EcoT14I	CCWWGG	2 cut(s)	204, 438
EcoT22I	ATGCAT	2 cut(s)	2032, 3787
EcoT38I	GRGCYC	6 cut(s)	614, 3147, 3280, 3706, 3764, 5447
ErhI	CCWWGG	2 cut(s)	204, 438
Esp3I	CGTCTC	1 cut(s)	3
FalI	AAGNNNNNCTT	2 cut(s)	1847, 1879
FaqI	GGGAC	3 cut(s)	204, 4154, 4381
FauI	CCCGC	2 cut(s)	1871, 4357
FauNDI	CATATG	1 cut(s)	4906
FbaI	TGATCA	3 cut(s)	1702, 2515, 3769
FriOI	GRGCYC	6 cut(s)	614, 3147, 3280, 3706, 3764, 5447
FspI	TGCGCA	1 cut(s)	3338
GlaI	GCGC	7 cut(s)	1622, 1871, 3338, 3379, 4433, 4498, 4875
GsuI	CTGGAG	4 cut(s)	192, 1601, 2454, 4193
HaeII	RGCGCY	1 cut(s)	3381
HaeIII	GGCC	5 cut(s)	254, 2196, 2805, 3750, 4259
HapII	CCGG	7 cut(s)	134, 255, 261, 359, 1241, 1979, 2689
HgaI	GACGC	1 cut(s)	2612
HhaI	GCGC	7 cut(s)	1623, 1872, 3339, 3380, 4434, 4499, 4876
Hin6I	GCGC	7 cut(s)	1621, 1870, 3337, 3378, 4432, 4497, 4874
HinP1I	GCGC	7 cut(s)	1621, 1870, 3337, 3378, 4432, 4497, 4874
HincII	GTYRAC	6 cut(s)	754, 2505, 2814, 3778, 4413, 5239
HindII	GTYRAC	6 cut(s)	754, 2505, 2814, 3778, 4413, 5239
HindIII	AAGCTT	1 cut(s)	4551
HpaI	GTTAAC	1 cut(s)	3778
HpaII	CCGG	7 cut(s)	134, 255, 261, 359, 1241, 1979, 2689
HphI	GGTGA	5 cut(s)	1384, 1948, 2444, 3401, 3980
Hpy99I	CGWCG	3 cut(s)	3009, 4983, 5496
HpyCH4IV	ACGT	4 cut(s)	2953, 3007, 3894, 4289
HpySE526I	ACGT	4 cut(s)	2953, 3007, 3894, 4289
HspAI	GCGC	7 cut(s)	1621, 1870, 3337, 3378, 4432, 4497, 4874
KpnI	GGTACC	1 cut(s)	1077
KroI	GCCGGC	1 cut(s)	1978
KroNI	GCCGGC	1 cut(s)	1980
Ksp22I	TGATCA	3 cut(s)	1702, 2515, 3769
KspAI	GTTAAC	1 cut(s)	3778
LguI	GCTCTTC	1 cut(s)	3769
MabI	ACCWGGT	1 cut(s)	2092
MaeII	ACGT	4 cut(s)	2953, 3007, 3894, 4289
MbiI	CCGCTC	3 cut(s)	1011, 1613, 5170
MfeI	CAATTG	2 cut(s)	2157, 4715
MhlI	GDGCHC	8 cut(s)	614, 2797, 3147, 3280, 3706, 3764, 5217, 5447
MlsI	TGGCCA	2 cut(s)	2196, 4259
MluNI	TGGCCA	2 cut(s)	2196, 4259
MmeI	TCCRAC	6 cut(s)	120, 300, 610, 723, 2041, 3883
Mox20I	TGGCCA	2 cut(s)	2196, 4259
Mph1103I	ATGCAT	2 cut(s)	2032, 3787
MroNI	GCCGGC	1 cut(s)	1978
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	2 cut(s)	2196, 4259
MslI	CAYNNNNRTG	7 cut(s)	647, 1206, 2517, 4818, 5181, 5312, 5660
Msp20I	TGGCCA	2 cut(s)	2196, 4259
MspA1I	CMGCKG	5 cut(s)	4895, 5117, 5276, 5333, 5339
MspCI	CTTAAG	3 cut(s)	416, 2996, 3218
MspI	CCGG	7 cut(s)	134, 255, 261, 359, 1241, 1979, 2689
MunI	CAATTG	2 cut(s)	2157, 4715
Mva1269I	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3339
MvaI	CCWGG	7 cut(s)	689, 1370, 1998, 2094, 2198, 2357, 4211
MvnI	CGCG	3 cut(s)	3553, 4497, 4876
NaeI	GCCGGC	1 cut(s)	1980
NciI	CCSGG	3 cut(s)	135, 262, 1241
NdeI	CATATG	1 cut(s)	4906
NgoMIV	GCCGGC	1 cut(s)	1978
NheI	GCTAGC	1 cut(s)	2723
NmuCI	GTSAC	6 cut(s)	90, 1079, 1718, 1969, 3358, 3847
NsbI	TGCGCA	1 cut(s)	3338
NsiI	ATGCAT	2 cut(s)	2032, 3787
NspI	RCATGY	4 cut(s)	646, 2294, 4657, 5519
PaeI	GCATGC	1 cut(s)	646
PagI	TCATGA	1 cut(s)	5598
PciI	ACATGT	1 cut(s)	4653
PciSI	GCTCTTC	1 cut(s)	3769
PctI	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3339
PdiI	GCCGGC	1 cut(s)	1980
PdmI	GAANNNNTTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	4634
PfoI	TCCNGGA	1 cut(s)	4209
PinAI	ACCGGT	1 cut(s)	2688
PpuMI	RGGWCCY	1 cut(s)	233
PscI	ACATGT	1 cut(s)	4653
PshBI	ATTAAT	1 cut(s)	3069
Psp124BI	GAGCTC	4 cut(s)	3147, 3280, 3764, 5447
Psp1406I	AACGTT	1 cut(s)	4289
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	7 cut(s)	687, 1368, 1996, 2092, 2196, 2355, 4209
PspGI	CCWGG	7 cut(s)	687, 1368, 1996, 2092, 2196, 2355, 4209
PspPI	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3652
PspPPI	RGGWCCY	1 cut(s)	233
PstI	CTGCAG	3 cut(s)	1798, 2875, 4885
PstNI	CAGNNNCTG	6 cut(s)	1700, 1778, 1805, 2093, 3827, 4121
PvuII	CAGCTG	3 cut(s)	4895, 5276, 5339
RsaI	GTAC	7 cut(s)	1075, 1144, 2523, 2646, 3825, 4476, 4991
RsaNI	GTAC	7 cut(s)	1074, 1143, 2522, 2645, 3824, 4475, 4990
RseI	CAYNNNNRTG	7 cut(s)	647, 1206, 2517, 4818, 5181, 5312, 5660
SacI	GAGCTC	4 cut(s)	3147, 3280, 3764, 5447
SapI	GCTCTTC	1 cut(s)	3769
Sau96I	GGNCC	8 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803, 3652
SduI	GDGCHC	8 cut(s)	614, 2797, 3147, 3280, 3706, 3764, 5217, 5447
SexAI	ACCWGGT	1 cut(s)	2092
SfcI	CTRYAG	5 cut(s)	1794, 2365, 2871, 3741, 4881
SinI	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3652
SmiMI	CAYNNNNRTG	7 cut(s)	647, 1206, 2517, 4818, 5181, 5312, 5660
SpeI	ACTAGT	2 cut(s)	1490, 5431
SphI	GCATGC	1 cut(s)	646
SspI	AATATT	1 cut(s)	3085
SstI	GAGCTC	4 cut(s)	3147, 3280, 3764, 5447
StyI	CCWWGG	2 cut(s)	204, 438
TaiI	ACGT	4 cut(s)	2956, 3010, 3897, 4292
TatI	WGTACW	3 cut(s)	1142, 2644, 4474
TauI	GCSGC	4 cut(s)	3556, 4384, 4645, 5336
TseFI	GTSAC	6 cut(s)	90, 1079, 1718, 1969, 3358, 3847
Tsp45I	GTSAC	6 cut(s)	90, 1079, 1718, 1969, 3358, 3847
TspGWI	ACGGA	5 cut(s)	1139, 1645, 3665, 3788, 5355
Van91I	CCANNNNNTGG	1 cut(s)	4634
Vha464I	CTTAAG	3 cut(s)	416, 2996, 3218
VpaK11BI	GGWCC	6 cut(s)	233, 356, 1832, 2549, 2588, 3652
VspI	ATTAAT	1 cut(s)	3069
XbaI	TCTAGA	1 cut(s)	2035
XceI	RCATGY	4 cut(s)	646, 2294, 4657, 5519
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3528, 3603
XmnI	GAANNNNTTC	1 cut(s)	274
Zsp2I	ATGCAT	2 cut(s)	2032, 3787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.