Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Forward (+)

821961 .. 823299

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCAGTTGGTCCTGTTGAGAAGATCAAATTCAAGGATCGATCTTGAAGCGCAGAGGTGGGGTTCAGGACTATTTGGGATGAATCAGATCCTTGCTCTGTGGAATAAAGATGTTAGTCGAATTTTGCCTCTCGCTGACTGTGGGGTAACATATACTGCTTGTGCGGATGAACCACCTCGTGCTTCCCTAATTAGGGATATTTATACATTCCTTGATCTCAGTGGCTATATAAATATTGGAATTGCTCGTGAGAAGGATAAAGCAGAATCTGGTCCCAAGCATGACTATAAAATTCTGAGAGAAAAAAATTTTGAGGAAATTTTTGGGGTTTCAGTTGCTGATTCAGAGGATGGAGTTTCCTTTATCACAGGCCAGGTTAAGAGTTCTAAAACTAAAATTGATGCGAAGAGTGGTGTCATAATTAAAAGTGACAACTTGACTCAGGAAGTCACAAAAGACAACGGGCTTGTAACCACAGCGGCATTGGAATTGTCCAATACAAAAAACCATGCTGAGTGTGAGACTGATCACCCGGAAAACACCAGTGTTGATGCAAGGTTACAAAGTAAATTGGACAATATGGATGTTTCAAGTAGTGATCCGGTTAGTGAGACATTGGGTGATGGAGGCATCCCTCTTGAAACTCCAGAGTTAAAGAATGTATCACACAGTACTCAGTGTGCATCACAAGATCGATGCAGTGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

237

Amino Acids

25.86

Weight (kDa)

4.85

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	164, 479
AclWI	GGATC	3 cut(s)	44, 82, 593
AcsI	RAATTY	5 cut(s)	28, 120, 291, 307, 318
AdeI	CACNNNGTG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	2 cut(s)	192, 193
AgsI	TTSAA	4 cut(s)	33, 47, 591, 641
AjnI	CCWGG	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	515, 605
AlwI	GGATC	3 cut(s)	44, 82, 593
AlwNI	CAGNNNCTG	2 cut(s)	269, 338
AoxI	GGCC	1 cut(s)	370
ApoI	RAATTY	5 cut(s)	28, 120, 291, 307, 318
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	10, 272
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	521, 632
AvaII	GGWCC	2 cut(s)	10, 272
BauI	CACGAG	2 cut(s)	177, 246
BccI	CCATC	2 cut(s)	344, 617
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	526
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	2 cut(s)	515, 605
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	374, 533
Bme18I	GGWCC	2 cut(s)	10, 272
BmgT120I	GGNCC	2 cut(s)	10, 272
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	2 cut(s)	374, 533
BmsI	GCATC	5 cut(s)	391, 541, 639, 686, 692
BpmI	CTGGAG	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	533
Bsa29I	ATCGAT	2 cut(s)	39, 694
BsaWI	WCCGGW	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 193
Bse1I	ACTGG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	374
BseCI	ATCGAT	2 cut(s)	39, 694
BseGI	GGATG	5 cut(s)	84, 172, 355, 589, 630
BseLI	CCNNNNNNNGG	2 cut(s)	192, 193
BseMII	CTCAG	5 cut(s)	232, 287, 455, 504, 689
BseNI	ACTGG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	372
BshVI	ATCGAT	2 cut(s)	39, 694
BsiSI	CCGG	2 cut(s)	533, 602
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	192, 193
BsmAI	GTCTC	2 cut(s)	515, 605
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	372
Bsp143I	GATC	8 cut(s)	23, 36, 40, 87, 214, 526, 598, 691
BspACI	CCGC	2 cut(s)	164, 479
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	5 cut(s)	231, 288, 454, 505, 688
BspDI	ATCGAT	2 cut(s)	39, 694
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	3 cut(s)	44, 82, 593
BsrI	ACTGG	1 cut(s)	543
BssMI	GATC	8 cut(s)	23, 36, 40, 87, 214, 526, 598, 691
BssSI	CACGAG	2 cut(s)	177, 246
Bst2BI	CACGAG	2 cut(s)	177, 246
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	140, 671
Bst6I	CTCTTC	1 cut(s)	401
BstDEI	CTNAG	5 cut(s)	218, 296, 441, 513, 675
BstF5I	GGATG	5 cut(s)	84, 172, 355, 589, 630
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	8 cut(s)	26, 39, 43, 90, 217, 529, 601, 694
BstMAI	GTCTC	2 cut(s)	515, 605
BstMBI	GATC	8 cut(s)	23, 36, 40, 87, 214, 526, 598, 691
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	372, 531
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu15I	ATCGAT	2 cut(s)	39, 694
BsuRI	GGCC	1 cut(s)	372
BsuTUI	ATCGAT	2 cut(s)	39, 694
BtsCI	GGATG	5 cut(s)	84, 172, 355, 589, 630
BtsI	GCAGTG	1 cut(s)	706
BtsIMutI	CAGTG	4 cut(s)	226, 550, 683, 706
CaiI	CAGNNNCTG	2 cut(s)	269, 338
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	10, 272
ClaI	ATCGAT	2 cut(s)	39, 694
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	2 cut(s)	281, 509
CviJI	RGCY	3 cut(s)	225, 372, 466
CviKI_1	RGCY	3 cut(s)	225, 372, 466
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	5 cut(s)	218, 296, 441, 513, 675
DpnI	GATC	8 cut(s)	25, 38, 42, 89, 216, 528, 600, 693
DpnII	GATC	8 cut(s)	23, 36, 40, 87, 214, 526, 598, 691
DraIII	CACNNNGTG	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	10, 272
EcoRII	CCWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	284, 512
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	2 cut(s)	280, 508
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	5 cut(s)	91, 179, 362, 596, 617
Fsp4HI	GCNGC	1 cut(s)	480
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	2 cut(s)	533, 602
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	284, 512
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	4 cut(s)	82, 266, 341, 439
HpaII	CCGG	2 cut(s)	533, 602
HphI	GGTGA	2 cut(s)	521, 632
Hpy188I	TCNGA	3 cut(s)	87, 297, 346
Hpy188III	TCNNGA	6 cut(s)	44, 66, 248, 443, 638, 647
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	2 cut(s)	140, 671
HpyCH4V	TGCA	4 cut(s)	4, 554, 683, 699
HpyF3I	CTNAG	5 cut(s)	218, 296, 441, 513, 675
Hsp92II	CATG	2 cut(s)	284, 512
HspAI	GCGC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	8 cut(s)	23, 36, 40, 87, 214, 526, 598, 691
LweI	GCATC	5 cut(s)	391, 541, 639, 686, 692
MaeIII	GTNAC	5 cut(s)	145, 428, 448, 469, 558
MalI	GATC	8 cut(s)	25, 38, 42, 89, 216, 528, 600, 693
MboI	GATC	8 cut(s)	23, 36, 40, 87, 214, 526, 598, 691
MboII	GAAGA	2 cut(s)	33, 418
MflI	RGATCY	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	433
MnlI	CCTC	8 cut(s)	48, 138, 186, 307, 340, 620, 645, 697
MseI	TTAA	3 cut(s)	378, 423, 653
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	2 cut(s)	533, 602
MspR9I	CCNGG	2 cut(s)	374, 533
MvaI	CCWGG	1 cut(s)	374
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	8 cut(s)	23, 36, 40, 87, 214, 526, 598, 691
NlaIII	CATG	2 cut(s)	284, 512
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	428, 448
PfeI	GAWTC	3 cut(s)	82, 266, 341
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	2 cut(s)	10, 272
PstNI	CAGNNNCTG	2 cut(s)	269, 338
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
SaqAI	TTAA	3 cut(s)	378, 423, 653
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	8 cut(s)	23, 36, 40, 87, 214, 526, 598, 691
Sau96I	GGNCC	2 cut(s)	10, 272
ScaI	AGTACT	1 cut(s)	673
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	2 cut(s)	374, 533
SetI	ASST	4 cut(s)	59, 178, 378, 560
SfaNI	GCATC	5 cut(s)	391, 541, 639, 686, 692
SinI	GGWCC	2 cut(s)	10, 272
SsiI	CCGC	2 cut(s)	164, 479
SspI	AATATT	1 cut(s)	235
StyD4I	CCNGG	2 cut(s)	372, 531
TaaI	ACNGT	2 cut(s)	140, 671
TaqI	TCGA	3 cut(s)	39, 118, 694
TatI	WGTACW	1 cut(s)	671
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	82, 266, 341
Tru1I	TTAA	3 cut(s)	378, 423, 653
Tru9I	TTAA	3 cut(s)	378, 423, 653
TscAI	CASTG	4 cut(s)	226, 550, 683, 706
TseFI	GTSAC	2 cut(s)	428, 448
Tsp45I	GTSAC	2 cut(s)	428, 448
TspDTI	ATGAA	2 cut(s)	95, 183
TspRI	CASTG	4 cut(s)	226, 550, 683, 706
VpaK11BI	GGWCC	2 cut(s)	10, 272
XapI	RAATTY	5 cut(s)	28, 120, 291, 307, 318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.