Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Reverse (-)

61744595 .. 61754534

Gene Structure 9940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5739 bp

ATGGATGGAGACGAGAAGAGGTCGGGGTTTAAGAAGAGATCGAAGTTAATGGAGGTTAATCACAATTCGGATGACGATGAGCCGATTGGGTCACTGCTGAAGAAGAGGCAGCGAAACCCTAAGAAGGTTAAGCCGGGGTTGGAGGGCGAAAGGGGCAAGAAGGTTGAGGCTGGAGAGGAGGATTTGGGGGGACTGGATGATACCTTGGCAAGTTTTAGGAAGAAGCTCAAGGGTCCTAAGAGGGATTCTGGGGCCGGAACCGGGAGGGGAAGGAGTTCTAGTTTGGATGTTGTGCAGTCTTCGGATCAGGATGGGGGGTCAGATGCAAAATCAGTGTCGAGGAGTATGGAGAAAGGTCCAGTCATTGATGGTGATGGAACCGATGTGATTATGGATGTAGAGGTGGAAAACAGGCTTAAGGGAAAGGGAAAGAGACCCAAGGTTTCAGGTCTGGTATCTGCGGAGGGTTCTAATAGCTCTTTGGATCATCATTCGCAAGATTCATTATCGGCATTTTTTCAGAAGGCACAGTCTGGTGTTACTAAGAAGTCTCATCCCTCTTCGAGTCTTAGAGAGAAGAGTGGTTCTCTGGATTTGGAGGATGGACTGAGCCCTAGTTCAGAAGGTGTTGGAGGAAATAGCATGCCTGTGGCTGTGCAGAGACATAGTTCTGTTTCAAAACTGAACCACGAAAATCCAAGATTTGAAGATAGTTTGCTCTTCGATTCTGGTTTTAATTCGTTGGATTCAGTCAACAATCAGTATAAGATAGAGGAACAAAACAGATTTTGCCAAGATTCTGACTGCAACAGTAATCAAGAGAGACCTCAAGGACTTTATTCTATTCCAGATGACATGACGAGACTTGAGGATAGAACGAATGAACCCACAGTGGATTATTCTGGTTTAAATCTTCAAGAGGAACTATGTAGCTTGGATAGATCTAATGGCGGAGATAGCCAGCACTTACAGAAAATTCAAACTTTTGAGAACCGACTGAGGCACCGCTCTGTGATAAACTCAAACACTCTAACGATTTGTGAACAGAAGGGGGAAATGCTTGAGGTCGGTACCAGTGACTCCAAAGGGTGCTTTCCTGATGCTTTGTCCATTCAATCCACGGATATTCTAGCTAGATGTACATCAGGTGCAGACTGTGAAATATCCTCTTCAACTGGAAAAGAAATTCCGATGCCTCATTGTAATGATGAGTTACTGAACAAATCTAACTTTGCCCCGGATACACTAAAGAGGGAAGAAACTCCTTGTAATCGTGTAATTGCTTACACTGAGTTGCAAGATCTTGCTTCCAGTCCTTTGCATGAAGAGAATGCCATGATAACTGATTGTCAGATATCTTCAATCCAGGTGAGTCATCAAGCGAAAGCCTTGCAAACTGCCTCAGTTCAGAAGGGGAGCTATTGTGAAGATTTATCTTCTGATGAAGCATCAAAAGAGAGAATTATTCCAAAACATGATTATATTACTAGTAATGAGGAGGTTGATGGAGCTTCTCCTCCTTTATATGCAACAGTAGATGAGAATGAGAGTTTCCCAGAAGACACAGTATCTCTACCTGATATTGAAAACAGAGATGGTAAGCTATCCGCTCTCCAGCGCATACCACGGAATGCTAGGAAACGCAGGCATGGAGACATGGCTTATGAGGGGGATGTTGATTGGGAGATCTCAGTAACTGATCAAGGATTGGATAGTGACAATTCAATTAGAGCGAGAGTGAAGTTTGATTCCTCTTCAAGTATTGGCACAGAAGCTGAAAGTGGTGGGGCTGCAGCAGTGTCTGCTGGTCTAAAAGCTCACGCAGTTGGTCCTGTTGAGAAGATTAAATTCAAGGAGATCTTGAAGCGCAGAGGCGGGCTTCAGGATTACTTGGAATGCAGGAATCAGATCTTAGCTCTGTGGAGCAAAGATGTTAGTCGAATTTTGCCTCTAACCGACTGTGGGGTCACAGAGCCGGCTTGTGTGAATGAACCTGGGCGTGCCTCCCTAATTAGGGATATTTATGCATTTCTAGATCTCAGTGGTTATATAAATGTTGGAATTGCTGCCGAGAAGGATAAAGCAGAACCTGGTTCTAAGCATGACTATAAAATAGTCAGAGAAAAACCTTTTGAGGAAATTTCTGGGGTTTCAATTGCTGACTCAGAGGATGGGGTTTCCTTCATCATTGGCCAGGTTAAGAATTCAAAAACTTCCACCAATGCTAAGAATGGAATTACATTTAATAGCGAAAACTTGACTGAGGGAGCCACAAAAGACAATGGGCATGTTGAGGCAGTGGCATTGGAATTGTTTGATGCGAAACATCCTGAAGAATGCCAAGCTGATTACCTGGAAAACTGTAGTGCTGATGCAAGGTTCCAAAGTCGATTGGACAATATGGATGTTTCTAGTAGTGATCCCTCTGGTGAGACATTGGATGGTGGAGTCATCCCTGTTGTAACTCCAGAGATAAAGAATGAATCGCAGAGTATTCAGTCAACACCACATGATCATGTACCGAGTAATGATACCCTGCAATGTGGTCCAGAAGTCAGAAAGGAAATCATTGTTGTAGGTGCTGGTCCTGCTGGCTTAACTGCTGCACGCCACTTGCAGCGTCAGGGGTTTTCAGTCAATGTACTTGAAGCTAGGAGTCGAATAGGAGGTCGTGTTTATACAGACCGGTCATCTCTATCAGTTGCAGTGGATCTTGGTGCTAGCATTATCACTGGTGTCGAGGCTGATTGGGCAACTGAAAGAAGACCCGATCCCTCCTCATTGGTTTGTGCTCAGTTGGGCCTTGAGTTGACTGTATTAAACAGTGATTGCCCTCTTTATGATATTGAAACAGGTCAAAAAGTTCCTGCAGATCTAGATGAGGCATTGGAAGCAGAGTTCAACAGCCTTCTTGATGACATGGTATTGCTTGTAGCACAGAAGGGAGAACGTGCAGCAAGAATGTCTCTTGAGGAAGGTTTTGAATATGTCCTTAAGAGGCGACGTATGGCACAATCAGGGAGTGCTAAAGAAAAAGAATTGCATGGTTCAAGGGATGGATTGATTAATGCTAGAACAAATATTGATGGTAGAGTTGCTGATAAAAGTTATTGTAAGCAAGAGCTCTTGAGTCCTCTTGAGAGGAGGGTTATGGATTGGCATTTTGCTAATTTGGAGTATGGTTGTGCAGCTCCGCTTAAGGAGGTATCTCTACCCCATTGGAACCAAGATGATGTATATGGTGGCTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGCACTGTTGTTGAGTCTCTCGGAGAAGGACTGCGCATTCACTTGAATCATGTAGTCACTGATATTTCGTATGGCCCTGAGGATGGTGAATTGAATAATAACCAGTGTAACAAAGTCAAAGTTTCCACATCAAATGGGACTATCTTTTGTGGAGATGCAGTCTTGATTACAGTGCCTCTTGGGTGCTTAAAAGCAGAAACCATAAAGTTTTCTCCACCATTGCCCCAGTGGAAACATTCTTCTATCACGCGGCTTGGATTTGGCGTTCTTAATAAAGTAGTTTTGGAATTTCCGGATGTCTTTTGGGATGACACCGTGGACTACTTTGGAGCAACTGCTGAAGAAACGGACCTGAGGGGTCAGTGCTTTATGTTCTGGAATATCAAGAAAACTGTTGGGGCTCCCGTTCTTATAGCTTTAGTGGTTGGTAAGGCAGCTATAGAAGGCCAAAATATGAGCTCTTCTGATCATGTTAACCATGCATTAGTGGCTCTCCGTAAATTGTTTGGAGAGGCGTCAGTACCTGATCCAGTTGCATCAGTTGTGACAGATTGGGGCAGGGATCCTTTCAGCTATGGTGCATACTCATACGTTGCTGTCGGAGCTTCTGGAAAAGACTATGACATACTAGGGAGACCTGTTGATAACTGCCTATTTTTCGCTGGTGAAGCTACCTGCAAGGAGCATCCCGACACTGTTGGTGGTGCAATGATGAGTGGGCTTCGAGAGTCAGTGCGTATAATTGACATACTGACAACTGGAAATGATTACACAGCAGAAGCAGAAGCAATGGAGTCGATACAGAGACAGTCAGCCTCTGAAAAGGATGAAGTTTGGGACATAACAAGGAGACTTGATGCGGTTGAACTTTCCAATGTCCTTTACAAGAACAGGGAAGCCTTACTCCAGGACTTGTTCTTTAGTGCAAAAACCACCAAAGGAAGGTTGCATCTGGCCAAAGAGTTATTGAGTCTTCCTGCTGAAACGTTGAAGTCCTTTGCTGGCACCAAAGAGGGGCTAACCACACTTAACTCATGGATACTGGACTCAATGGGGAAAGCGGGGACTCAACTCTTGCGGCATTGTGTTCGTCTTCTTGTTCTTGTGTCAACAGACCTGCTGGCTGTGCGCGTGTCTGGCATTGGGAAAACTGTAAGAGAGAAAGTTTGTGTACATACTAGCCGTGATATACGTGCCATTGCAAGTCAGCTAGTTAGTGTGTGGCTTGAAGTCTTCCGCAGAGAAAAAGCTTCTAATGGAGGATTGAAATTGTCAAGGCAAGCCAATGGTGTAGATTCATTGAAGAGAAAAACAGTCAGAGACCCATCTTCTGGAAAGCCGCCACTACACATGTATCATGGTGCTTTTGAGCATAAAGGAAGTTTACCAGATTCTGCATCCACGGGAAGCCAATTGCCTCCGAATCCAAACGTGAAGAAATTGAATGGCAAAGCCATTAAACTTGAAACAGCAAATTCCTCAAGATTTGGAGGTTCAACAGGCAGACCACATAATGATGACTTTGCTATGACTGAAGAAGAAAGAGCTGCCATTGCTGCTGCTGAAGCAGCGCGAGCTGCAGCACTTGCAGCTGCTAAGGCATATGCATCTTCAGAAGCCAAGAGCAGTTCGTTGCTTCAGCTTCCTAAGATTCCCTCGTTTCATAAATTTGCTCGACGGGAGCAGTACGCTCAAATGGATGAGTATGATTTTAGGAGGAAGTGGTCTGGTGGTGTTTTGGGTAGAGAAGATTGCATATCTGAAATTGACTCTAGGAACTGCAAAGTAAGGAACTGGTCTGTTGATTTCTCCGCTGCTTGTGTCAATCTTGACAGTTCAAGAAGGTCAGTTGATAACCTCTCAGAGCAGAGCCATCCCAATGAGATCGCTAGTCAGTTGAATTTCCGAGAGCACTCAGGGGAGAGTGCTGCTGTTGACAGTAGTATCTATACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGGGTAAAAGACTATCATGCCATTGAGATGTGGCAATCTCAAGCAGCGGCAGCTGACCCTGATTTCTTCCATCCTGATCCTTATGTAAAGGATGAGGAAGATTCAAATACAACTTCTAAAGGACTAAGCTGGAAGCATGAAGGACTAGTAAATGAGAGCTCTGTTTCGCAAGTTACTGTAAACAGGGGGTCATTGAAAAATCATCGTCGAGGAGCAGACCAAATTAAACATGCAGTTGTTGATTATGTGGCATCATTGCTTATGCCCCTCTATAAAGCTAAAAAGATTGATAGAGAGGGATACAAGTCAATCATGAAGAAAAGTGCTACCAAGGTCATGGAGTTAGCCACTGATGCAGAGAAAGCAATGGCTGTATCCGAGTTTCTTGATTTCAAGCGCAAGAACAAGATTCGTGCCTTTGTGGATAAATTGATTGAGAAGCACATGGCAGTGAAGCCTGTTGTGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

1912

Amino Acids

208.92

Weight (kDa)

5.55

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	607 - 685	2.5e-12	SWIRM domain
Thi4	PF01946	854 - 892	4e-06	Thi4 family
DAO	PF01266	856 - 890	3.6e-06	FAD dependent oxidoreductase
FAD_oxidored	PF12831	856 - 990	8.7e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	858 - 914	2.4e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	864 - 1342	1.7e-86	Flavin containing amine oxidoreductase
SCAF11-like_C	PF23030	1829 - 1883	9.4e-06	SCAF11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1964
Acc16I	TGCGCA	1 cut(s)	3317
Acc36I	ACCTGC	2 cut(s)	3965, 4407
Acc65I	GGTACC	1 cut(s)	1070
AccB1I	GGYRCC	3 cut(s)	1002, 1070, 4286
AccB7I	CCANNNNNTGG	1 cut(s)	4613
AccBSI	CCGCTC	2 cut(s)	1008, 1610
AccII	CGCG	3 cut(s)	3532, 4413, 4855
AccIII	TCCGGA	1 cut(s)	3574
AclI	AACGTT	1 cut(s)	4268
AclWI	GGATC	9 cut(s)	312, 492, 2414, 2718, 2765, 3803, 3839, 3852, 5336
AcoI	YGGCCR	2 cut(s)	2191, 4236
AcuI	CTGAAG	8 cut(s)	119, 1865, 2352, 3642, 4836, 4866, 4878, 4904
AcyI	GRCGYC	1 cut(s)	3797
AfaI	GTAC	7 cut(s)	1072, 1141, 2520, 2643, 3804, 4455, 4970
AfiI	CCNNNNNNNGG	9 cut(s)	124, 261, 1962, 2013, 2014, 3365, 4224, 4296, 4613
AflII	CTTAAG	3 cut(s)	416, 2993, 3197
AflIII	ACRYGT	1 cut(s)	4632
AgeI	ACCGGT	1 cut(s)	2685
AhlI	ACTAGT	2 cut(s)	1487, 5410
AjnI	CCWGG	6 cut(s)	1365, 1993, 2089, 2193, 2352, 4188
AloI	GAACNNNNNNTCC	4 cut(s)	2882, 2914, 3531, 3563
Alw21I	GWGCWC	6 cut(s)	2794, 3126, 3259, 3743, 5196, 5426
AlwI	GGATC	9 cut(s)	312, 492, 2414, 2718, 2765, 3803, 3839, 3852, 5336
AlwNI	CAGNNNCTG	7 cut(s)	1697, 1775, 1802, 2090, 3806, 4100, 4676
Aor13HI	TCCGGA	1 cut(s)	3574
AoxI	GGCC	6 cut(s)	252, 2191, 2800, 3355, 3727, 4236
ArsI	GACNNNNNNTTYG	4 cut(s)	320, 352, 2653, 2685
AseI	ATTAAT	1 cut(s)	3066
AsiGI	ACCGGT	1 cut(s)	2685
Asp700I	GAANNNNTTC	1 cut(s)	274
Asp718I	GGTACC	1 cut(s)	1070
AspLEI	GCGC	6 cut(s)	1620, 1869, 3318, 4413, 4855, 5664
AspS9I	GGNCC	9 cut(s)	233, 252, 356, 1829, 2546, 2585, 2800, 3356, 3631
AsuC2I	CCSGG	3 cut(s)	135, 262, 1238
AsuHPI	GGTGA	5 cut(s)	383, 1381, 2441, 3380, 3959
AsuNHI	GCTAGC	1 cut(s)	2720
AvaII	GGWCC	6 cut(s)	233, 356, 1829, 2546, 2585, 3631
AxyI	CCTNAGG	2 cut(s)	3360, 3635
BaeI	ACNNNNGTAYC	4 cut(s)	4619, 4652, 5209, 5242
BalI	TGGCCA	2 cut(s)	2193, 4238
BamHI	GGATCC	1 cut(s)	3844
BanI	GGYRCC	3 cut(s)	1002, 1070, 4286
BanII	GRGCYC	6 cut(s)	614, 3126, 3259, 3685, 3743, 5426
BbsI	GAAGAC	6 cut(s)	291, 1566, 2770, 4247, 4367, 4507
Bbv12I	GWGCWC	6 cut(s)	2794, 3126, 3259, 3743, 5196, 5426
BceAI	ACGGC	1 cut(s)	4449
BcgI	CGANNNNNNTGC	6 cut(s)	1372, 1406, 4059, 4093, 4352, 4386
BciT130I	CCWGG	6 cut(s)	1367, 1995, 2091, 2195, 2354, 4190
BciVI	GTATCC	4 cut(s)	1234, 4314, 5558, 5650
BclI	TGATCA	3 cut(s)	1699, 2512, 3748
BcnI	CCSGG	3 cut(s)	135, 262, 1238
BcuI	ACTAGT	2 cut(s)	1487, 5410
BfmI	CTRYAG	5 cut(s)	1791, 2362, 2868, 3720, 4860
BfrI	CTTAAG	3 cut(s)	416, 2993, 3197
BfuAI	ACCTGC	2 cut(s)	3965, 4407
BfuI	GTATCC	4 cut(s)	1234, 4314, 5558, 5650
BglII	AGATCT	7 cut(s)	941, 1300, 1686, 1857, 1908, 2035, 2872
Bme1390I	CCNGG	9 cut(s)	135, 262, 1238, 1367, 1995, 2091, 2195, 2354, 4190
Bme18I	GGWCC	6 cut(s)	233, 356, 1829, 2546, 2585, 3631
BmgT120I	GGNCC	9 cut(s)	233, 252, 356, 1829, 2546, 2585, 2800, 3356, 3631
BmrFI	CCNGG	9 cut(s)	135, 262, 1238, 1367, 1995, 2091, 2195, 2354, 4190
BmrI	ACTGGG	1 cut(s)	3502
BmtI	GCTAGC	1 cut(s)	2724
BmuI	ACTGGG	1 cut(s)	3502
BpiI	GAAGAC	6 cut(s)	291, 1566, 2770, 4247, 4367, 4507
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
BpmI	CTGGAG	4 cut(s)	192, 1598, 2451, 4172
Bpu10I	CCTNAGC	1 cut(s)	4878
BpuMI	CCSGG	3 cut(s)	135, 262, 1238
BsaAI	YACGTR	1 cut(s)	4475
BsaBI	GATNNNNATC	1 cut(s)	1141
BsaHI	GRCGYC	1 cut(s)	3797
BsaI	GGTCTC	4 cut(s)	427, 817, 3910, 4596
BsaWI	WCCGGW	2 cut(s)	2685, 3574
BsaXI	ACNNNNNCTCC	8 cut(s)	265, 295, 1408, 1438, 2658, 2688, 3426, 3456
Bsc4I	CCNNNNNNNGG	9 cut(s)	124, 261, 1962, 2013, 2014, 3365, 4224, 4296, 4613
Bse118I	RCCGGY	2 cut(s)	1975, 2685
Bse21I	CCTNAGG	2 cut(s)	3360, 3635
Bse3DI	GCAATG	8 cut(s)	2546, 3500, 3996, 4077, 4479, 4833, 5519, 5637
Bse8I	GATNNNNATC	1 cut(s)	1141
BseAI	TCCGGA	1 cut(s)	3574
BseBI	CCWGG	6 cut(s)	1367, 1995, 2091, 2195, 2354, 4190
BseJI	GATNNNNATC	1 cut(s)	1141
BseLI	CCNNNNNNNGG	9 cut(s)	124, 261, 1962, 2013, 2014, 3365, 4224, 4296, 4613
BseMI	GCAATG	8 cut(s)	2546, 3500, 3996, 4077, 4479, 4833, 5519, 5637
BseRI	GAGGAG	7 cut(s)	191, 355, 1506, 1511, 2767, 3157, 5490
BsgI	GTGCAG	6 cut(s)	314, 677, 1170, 2589, 2973, 3207
Bsh1236I	CGCG	3 cut(s)	3532, 4413, 4855
BshFI	GGCC	6 cut(s)	254, 2193, 2802, 3357, 3729, 4238
BshNI	GGYRCC	3 cut(s)	1002, 1070, 4286
BshTI	ACCGGT	1 cut(s)	2685
BsiHKAI	GWGCWC	6 cut(s)	2794, 3126, 3259, 3743, 5196, 5426
BsiSI	CCGG	7 cut(s)	134, 255, 261, 1238, 1976, 2686, 3575
BslFI	GGGAC	4 cut(s)	204, 3433, 4133, 4360
BslI	CCNNNNNNNGG	9 cut(s)	124, 261, 1962, 2013, 2014, 3365, 4224, 4296, 4613
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	4 cut(s)	204, 3433, 4133, 4360
BsmI	GAATGC	5 cut(s)	1336, 1636, 1901, 2342, 3318
BsnI	GGCC	6 cut(s)	254, 2193, 2802, 3357, 3729, 4238
Bso31I	GGTCTC	4 cut(s)	427, 817, 3910, 4596
Bsp1286I	GDGCHC	8 cut(s)	614, 2794, 3126, 3259, 3685, 3743, 5196, 5426
Bsp13I	TCCGGA	1 cut(s)	3574
Bsp1407I	TGTACA	2 cut(s)	1139, 4453
BspANI	GGCC	6 cut(s)	254, 2193, 2802, 3357, 3729, 4238
BspEI	TCCGGA	1 cut(s)	3574
BspFNI	CGCG	3 cut(s)	3532, 4413, 4855
BspHI	TCATGA	1 cut(s)	5577
BspMAI	CTGCAG	3 cut(s)	1795, 2872, 4864
BspMI	ACCTGC	2 cut(s)	3965, 4407
BspOI	GCTAGC	1 cut(s)	2724
BspPI	GGATC	9 cut(s)	312, 492, 2414, 2718, 2765, 3803, 3839, 3852, 5336
BspQI	GCTCTTC	2 cut(s)	725, 3748
BspT107I	GGYRCC	3 cut(s)	1002, 1070, 4286
BspTI	CTTAAG	3 cut(s)	416, 2993, 3197
BspTNI	GGTCTC	4 cut(s)	427, 817, 3910, 4596
BsrBI	CCGCTC	2 cut(s)	1008, 1610
BsrDI	GCAATG	8 cut(s)	2546, 3500, 3996, 4077, 4479, 4833, 5519, 5637
BsrFI	RCCGGY	2 cut(s)	1975, 2685
BsrGI	TGTACA	2 cut(s)	1139, 4453
BssAI	RCCGGY	2 cut(s)	1975, 2685
BssNI	GRCGYC	1 cut(s)	3797
BssT1I	CCWWGG	3 cut(s)	204, 438, 5595
Bst2UI	CCWGG	6 cut(s)	1367, 1995, 2091, 2195, 2354, 4190
BstACI	GRCGYC	1 cut(s)	3797
BstAFI	CTTAAG	3 cut(s)	416, 2993, 3197
BstAPI	GCANNNNNTGC	2 cut(s)	1802, 4868
BstAUI	TGTACA	2 cut(s)	1139, 4453
BstBAI	YACGTR	1 cut(s)	4475
BstDSI	CCRYGG	4 cut(s)	1119, 1625, 3597, 4683
BstFNI	CGCG	3 cut(s)	3532, 4413, 4855
BstHHI	GCGC	6 cut(s)	1620, 1869, 3318, 4413, 4855, 5664
BstNI	CCWGG	6 cut(s)	1367, 1995, 2091, 2195, 2354, 4190
BstNSI	RCATGY	4 cut(s)	646, 2291, 4636, 5498
BstSCI	CCNGG	9 cut(s)	133, 260, 1236, 1365, 1993, 2089, 2193, 2352, 4188
BstSFI	CTRYAG	5 cut(s)	1791, 2362, 2868, 3720, 4860
BstUI	CGCG	3 cut(s)	3532, 4413, 4855
BstV2I	GAAGAC	6 cut(s)	291, 1566, 2770, 4247, 4367, 4507
BstX2I	RGATCY	9 cut(s)	941, 1300, 1686, 1857, 1908, 2035, 2710, 2872, 3844
BstXI	CCANNNNNNTGG	1 cut(s)	5602
BstYI	RGATCY	9 cut(s)	941, 1300, 1686, 1857, 1908, 2035, 2710, 2872, 3844
Bsu36I	CCTNAGG	2 cut(s)	3360, 3635
BsuI	GTATCC	4 cut(s)	1234, 4314, 5558, 5650
BsuRI	GGCC	6 cut(s)	254, 2193, 2802, 3357, 3729, 4238
BtgI	CCRYGG	4 cut(s)	1119, 1625, 3597, 4683
BtsI	GCAGTG	5 cut(s)	92, 1803, 2304, 2712, 5721
BveI	ACCTGC	2 cut(s)	3965, 4407
CaiI	CAGNNNCTG	7 cut(s)	1697, 1775, 1802, 2090, 3806, 4100, 4676
CciI	TCATGA	1 cut(s)	5577
CfoI	GCGC	6 cut(s)	1620, 1869, 3318, 4413, 4855, 5664
Cfr10I	RCCGGY	2 cut(s)	1975, 2685
Cfr13I	GGNCC	9 cut(s)	233, 252, 356, 1829, 2546, 2585, 2800, 3356, 3631
CseI	GACGC	2 cut(s)	2609, 3786
CsiI	ACCWGGT	1 cut(s)	2089
Csp6I	GTAC	7 cut(s)	1071, 1140, 2519, 2642, 3803, 4454, 4969
CspAI	ACCGGT	1 cut(s)	2685
CviQI	GTAC	7 cut(s)	1071, 1140, 2519, 2642, 3803, 4454, 4969
DraI	TTTAAA	1 cut(s)	909
DrdI	GACNNNNNNGTC	1 cut(s)	1964
DseDI	GACNNNNNNGTC	1 cut(s)	1964
EaeI	YGGCCR	2 cut(s)	2191, 4236
EciI	GGCGGA	1 cut(s)	966
Ecl136II	GAGCTC	4 cut(s)	3124, 3257, 3741, 5424
Eco130I	CCWWGG	3 cut(s)	204, 438, 5595
Eco24I	GRGCYC	6 cut(s)	614, 3126, 3259, 3685, 3743, 5426
Eco31I	GGTCTC	4 cut(s)	427, 817, 3910, 4596
Eco32I	GATATC	1 cut(s)	1356
Eco47I	GGWCC	6 cut(s)	233, 356, 1829, 2546, 2585, 3631
Eco53kI	GAGCTC	4 cut(s)	3124, 3257, 3741, 5424
Eco57I	CTGAAG	8 cut(s)	119, 1865, 2352, 3642, 4836, 4866, 4878, 4904
Eco81I	CCTNAGG	2 cut(s)	3360, 3635
EcoICRI	GAGCTC	4 cut(s)	3124, 3257, 3741, 5424
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	2203
EcoRII	CCWGG	6 cut(s)	1365, 1993, 2089, 2193, 2352, 4188
EcoRV	GATATC	1 cut(s)	1356
EcoT14I	CCWWGG	3 cut(s)	204, 438, 5595
EcoT22I	ATGCAT	3 cut(s)	2029, 3766, 4891
EcoT38I	GRGCYC	6 cut(s)	614, 3126, 3259, 3685, 3743, 5426
ErhI	CCWWGG	3 cut(s)	204, 438, 5595
Esp3I	CGTCTC	1 cut(s)	3
FalI	AAGNNNNNCTT	2 cut(s)	1844, 1876
FaqI	GGGAC	4 cut(s)	204, 3433, 4133, 4360
FauI	CCCGC	2 cut(s)	1868, 4336
FauNDI	CATATG	1 cut(s)	4885
FbaI	TGATCA	3 cut(s)	1699, 2512, 3748
FriOI	GRGCYC	6 cut(s)	614, 3126, 3259, 3685, 3743, 5426
FspI	TGCGCA	1 cut(s)	3317
GlaI	GCGC	6 cut(s)	1619, 1868, 3317, 4412, 4854, 5663
GsuI	CTGGAG	4 cut(s)	192, 1598, 2451, 4172
HaeIII	GGCC	6 cut(s)	254, 2193, 2802, 3357, 3729, 4238
HapII	CCGG	7 cut(s)	134, 255, 261, 1238, 1976, 2686, 3575
HgaI	GACGC	2 cut(s)	2609, 3786
HhaI	GCGC	6 cut(s)	1620, 1869, 3318, 4413, 4855, 5664
Hin1I	GRCGYC	1 cut(s)	3797
Hin6I	GCGC	6 cut(s)	1618, 1867, 3316, 4411, 4853, 5662
HinP1I	GCGC	6 cut(s)	1618, 1867, 3316, 4411, 4853, 5662
HincII	GTYRAC	6 cut(s)	754, 2502, 2811, 3757, 4392, 5218
HindII	GTYRAC	6 cut(s)	754, 2502, 2811, 3757, 4392, 5218
HindIII	AAGCTT	1 cut(s)	4530
HpaI	GTTAAC	1 cut(s)	3757
HpaII	CCGG	7 cut(s)	134, 255, 261, 1238, 1976, 2686, 3575
HphI	GGTGA	5 cut(s)	383, 1381, 2441, 3380, 3959
Hpy99I	CGWCG	3 cut(s)	3006, 4962, 5475
HpyCH4IV	ACGT	6 cut(s)	2950, 3004, 3873, 4268, 4474, 4713
HpySE526I	ACGT	6 cut(s)	2950, 3004, 3873, 4268, 4474, 4713
Hsp92I	GRCGYC	1 cut(s)	3797
HspAI	GCGC	6 cut(s)	1618, 1867, 3316, 4411, 4853, 5662
Kpn2I	TCCGGA	1 cut(s)	3574
KpnI	GGTACC	1 cut(s)	1074
KroI	GCCGGC	1 cut(s)	1975
KroNI	GCCGGC	1 cut(s)	1977
Ksp22I	TGATCA	3 cut(s)	1699, 2512, 3748
KspAI	GTTAAC	1 cut(s)	3757
LguI	GCTCTTC	2 cut(s)	725, 3748
MabI	ACCWGGT	1 cut(s)	2089
MaeII	ACGT	6 cut(s)	2950, 3004, 3873, 4268, 4474, 4713
MbiI	CCGCTC	2 cut(s)	1008, 1610
MfeI	CAATTG	2 cut(s)	2154, 4694
MflI	RGATCY	9 cut(s)	941, 1300, 1686, 1857, 1908, 2035, 2710, 2872, 3844
MhlI	GDGCHC	8 cut(s)	614, 2794, 3126, 3259, 3685, 3743, 5196, 5426
MlsI	TGGCCA	2 cut(s)	2193, 4238
MluNI	TGGCCA	2 cut(s)	2193, 4238
MmeI	TCCRAC	5 cut(s)	120, 610, 723, 2038, 3862
Mox20I	TGGCCA	2 cut(s)	2193, 4238
Mph1103I	ATGCAT	3 cut(s)	2029, 3766, 4891
MroI	TCCGGA	1 cut(s)	3574
MroNI	GCCGGC	1 cut(s)	1975
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	2 cut(s)	2193, 4238
MslI	CAYNNNNRTG	7 cut(s)	647, 1203, 2514, 4797, 5160, 5291, 5714
Msp20I	TGGCCA	2 cut(s)	2193, 4238
MspA1I	CMGCKG	5 cut(s)	4874, 5096, 5255, 5312, 5318
MspCI	CTTAAG	3 cut(s)	416, 2993, 3197
MspI	CCGG	7 cut(s)	134, 255, 261, 1238, 1976, 2686, 3575
MspR9I	CCNGG	9 cut(s)	135, 262, 1238, 1367, 1995, 2091, 2195, 2354, 4190
MunI	CAATTG	2 cut(s)	2154, 4694
Mva1269I	GAATGC	5 cut(s)	1336, 1636, 1901, 2342, 3318
MvaI	CCWGG	6 cut(s)	1367, 1995, 2091, 2195, 2354, 4190
MvnI	CGCG	3 cut(s)	3532, 4413, 4855
NaeI	GCCGGC	1 cut(s)	1977
NciI	CCSGG	3 cut(s)	135, 262, 1238
NdeI	CATATG	1 cut(s)	4885
NgoMIV	GCCGGC	1 cut(s)	1975
NheI	GCTAGC	1 cut(s)	2720
NmeAIII	GCCGAG	1 cut(s)	2095
NmuCI	GTSAC	6 cut(s)	90, 1076, 1715, 1966, 3337, 3826
NsbI	TGCGCA	1 cut(s)	3317
NsiI	ATGCAT	3 cut(s)	2029, 3766, 4891
NspI	RCATGY	4 cut(s)	646, 2291, 4636, 5498
PaeI	GCATGC	1 cut(s)	646
PagI	TCATGA	1 cut(s)	5577
PciI	ACATGT	1 cut(s)	4632
PciSI	GCTCTTC	2 cut(s)	725, 3748
PctI	GAATGC	5 cut(s)	1336, 1636, 1901, 2342, 3318
PdiI	GCCGGC	1 cut(s)	1977
PdmI	GAANNNNTTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	4613
PfoI	TCCNGGA	1 cut(s)	4188
PinAI	ACCGGT	1 cut(s)	2685
Ppu21I	YACGTR	1 cut(s)	4475
PpuMI	RGGWCCY	1 cut(s)	233
PscI	ACATGT	1 cut(s)	4632
PshBI	ATTAAT	1 cut(s)	3066
Psp124BI	GAGCTC	4 cut(s)	3126, 3259, 3743, 5426
Psp1406I	AACGTT	1 cut(s)	4268
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	6 cut(s)	1365, 1993, 2089, 2193, 2352, 4188
PspGI	CCWGG	6 cut(s)	1365, 1993, 2089, 2193, 2352, 4188
PspPI	GGNCC	9 cut(s)	233, 252, 356, 1829, 2546, 2585, 2800, 3356, 3631
PspPPI	RGGWCCY	1 cut(s)	233
PstI	CTGCAG	3 cut(s)	1795, 2872, 4864
PstNI	CAGNNNCTG	7 cut(s)	1697, 1775, 1802, 2090, 3806, 4100, 4676
PsuI	RGATCY	9 cut(s)	941, 1300, 1686, 1857, 1908, 2035, 2710, 2872, 3844
PvuII	CAGCTG	3 cut(s)	4874, 5255, 5318
RsaI	GTAC	7 cut(s)	1072, 1141, 2520, 2643, 3804, 4455, 4970
RsaNI	GTAC	7 cut(s)	1071, 1140, 2519, 2642, 3803, 4454, 4969
RseI	CAYNNNNRTG	7 cut(s)	647, 1203, 2514, 4797, 5160, 5291, 5714
SacI	GAGCTC	4 cut(s)	3126, 3259, 3743, 5426
SapI	GCTCTTC	2 cut(s)	725, 3748
Sau96I	GGNCC	9 cut(s)	233, 252, 356, 1829, 2546, 2585, 2800, 3356, 3631
ScrFI	CCNGG	9 cut(s)	135, 262, 1238, 1367, 1995, 2091, 2195, 2354, 4190
SduI	GDGCHC	8 cut(s)	614, 2794, 3126, 3259, 3685, 3743, 5196, 5426
SexAI	ACCWGGT	1 cut(s)	2089
SfcI	CTRYAG	5 cut(s)	1791, 2362, 2868, 3720, 4860
SinI	GGWCC	6 cut(s)	233, 356, 1829, 2546, 2585, 3631
SmiMI	CAYNNNNRTG	7 cut(s)	647, 1203, 2514, 4797, 5160, 5291, 5714
SpeI	ACTAGT	2 cut(s)	1487, 5410
SphI	GCATGC	1 cut(s)	646
SspI	AATATT	1 cut(s)	3082
SstI	GAGCTC	4 cut(s)	3126, 3259, 3743, 5426
StyD4I	CCNGG	9 cut(s)	133, 260, 1236, 1365, 1993, 2089, 2193, 2352, 4188
StyI	CCWWGG	3 cut(s)	204, 438, 5595
TaiI	ACGT	6 cut(s)	2953, 3007, 3876, 4271, 4477, 4716
TatI	WGTACW	3 cut(s)	1139, 2641, 4453
TauI	GCSGC	4 cut(s)	3535, 4363, 4624, 5315
TseFI	GTSAC	6 cut(s)	90, 1076, 1715, 1966, 3337, 3826
Tsp45I	GTSAC	6 cut(s)	90, 1076, 1715, 1966, 3337, 3826
TspGWI	ACGGA	4 cut(s)	1136, 1642, 3644, 3767
Van91I	CCANNNNNTGG	1 cut(s)	4613
Vha464I	CTTAAG	3 cut(s)	416, 2993, 3197
VpaK11BI	GGWCC	6 cut(s)	233, 356, 1829, 2546, 2585, 3631
VspI	ATTAAT	1 cut(s)	3066
XbaI	TCTAGA	2 cut(s)	2032, 2875
XceI	RCATGY	4 cut(s)	646, 2291, 4636, 5498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3507
XmnI	GAANNNNTTC	1 cut(s)	274
Zsp2I	ATGCAT	3 cut(s)	2029, 3766, 4891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.