Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004779

Physical Location & Seq

Genomic Coordinates Forward (+)

68328166 .. 68335448

Gene Structure 7283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG476500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4950 bp

ATGGATGGAGACGAGAAGAGGTCGGGGTTAAAGAAGAGATCGAAGTTAATGGAGGTTAATCACAATTCGGATGACGATGAGCCGATTGGGTCACTGCTGAAGAAGAGGCAGCGAAACCCTAAGAAGGTTAAGCCAGGGTTGGAGGGCGAAAGGGGCAAGAAGTTTGAGGCTGGAGAGGAGGATTTGGGGGGACTGGATGATACCTTGGCAAGTTTTAGGAAGAAGCTCAAGGGTCCTAAGAGGGATTCTGGGGCCGGAACCGGGAGGGGAAGGAGTTCTAGTTTGGATGTTGTGCAGTCTTCGGATCAGGATGGGGGGTCGGATGCAAAATCAGTGTCGAGGAGTATGGAGAAAGGTCCGGTCATCGATGATGATGGAACCGATGTGATTATGGATGTAGAGGTGGAAAACAGGCTTAAGGGAAAGGGAAAGAGACCCAAGGTTTCAGGTCTGGTATCTGGGGAGGGTTCTAATAGCACTTTGGATCATCATTCGCAAGATTCGTTATCGGCATTTTTTCAGAAGGCACAGTCTGGTGTTACTAAGAAGTCTCATCCCTCTCCGAGTCTTAGAGAGAAGAGTGGTTCTCTGGATTTGGAGGATGGACTGAGCCCTAGTCCAGAAGGTGTTGGAGGAAATAGCATGCCTGTGGCTGTGCGGAGACATAGTTCTGTTTCAAAACTGAACCAGGAAAATCCAAGATTTGAAGATAGTTTGCTCTTCGATTCTGGTTTTAATTCGTTGGATTCAGTCAATGATCAGTATAAGATAGAGGAACAAAACAGATTTTGCCAAGATTCTGACTGCAACAGACAGAATCAAGAGAGATCTCAAGGACTTTATTCTATTCCAGATGACATGACGAGACTTGAGGATAGAAAGAATGAACCCACAGTGGATCATTCTGGTTTAAATGTTCAAGAGGAACTATGTAGCTTGGATAGATCTAATGGCGGAGATAGCCAGCACTTACAGAAAATTCAAACTTCTGAGAACCAACTGAGGCACTGCTCTGTGACAAACTCAAACACTCTAACGATTTGTGAACAGAAGGGGGAAATGCTTGGGGTCGGTACCAGTGACTCCAAAGGGGGCTTTCCTGATGCTTTGTCCATTCAGTCCACGGATGTTCTAGCTAGATGTACATCAGGTGCAGACTGTGAAATATCTTCTTCAACTGGAAAAGAAATTTCGATGCCTCATTATAATGATGAGTTACTGAACAAATCTAACTTTGCCCCATATACACTAAAGAGGGAAGAAACTCCTTGTAATCGAGTAATTGCTTACACTGAGGGGCAAGATCTTGCTTCCAGTCCTTTGCATGAAGAGAATGCCATAATAACTGATTGTCAGATATCTTCAATCCAGGTGAGTCATCAAGCGAAAGCCTTGCAAACTGCCTCAGTTCAGAAGGGGAGCTATTGTGAAGATTTATCTTCTGATGAAGCATCAAAAGAGAGAATTATTCCAAAACATGATTATATTACTAGTAATGAGGAGGTTGATGGAGCTTCTCCTCCTTTATATGCAACAGTAGATGAGAATGAGAGTTTCCCAGAAGACACAGTATCTCTACCTGATATTGAAAACAGAGACGGTAAGCTATCCGCTCTCCAGCGCATACCACGGAATGCTAGGAAACGCAGGCATGGAGACATGGCTTATGAGGGGGATGTTGATTGGGAGATCTCAGTAACTGATCAAGGATTGGATAGTGACAATTCAATTAGAGCGAAAGTGAAGTTTGATTCCTCTTCAAGTATTGGCACAGAAGCTGAAAGTGGTGGGGCTGCAGCAGTGTCTGCTGGTCTAAAAGCTCACGCAGTTGGTCCTGTTGAGAAGATTAAATTCAAGGAGATCTTGAAGCGCAGAGGCGGGCTTCAGGATTACTTGGAATGCAGGAATCAGATCTTAGCTCTGTGGAGCAAAGATGTTAGTCGAATTTTGCCTCTCACCGACTGTGGGGTCACAGAGCCTGCTTGTGTGAATGAACCTGGGCGTGCCTCCCTAATTAGGGATATTTATGCATTTCTAGATCTCAGTGGTTATATAAATGTTGGAATTGCTGCCGAGAAGGATAAAGCAGAACCTGGTTCTAAGCATGACTATAAAATAGTCAGAGAAAAACCTTTTGAGGAAATTTCTGGGGTTTCAATTGCTGACTCAGAGGATGGGGTTTCCTTCATCATTGGCCAGGTTAAGAATTCAAAAACTTCCACCGATGCTAAGAATGGAATTACATTTAATAGCGAAAACTTGACTGAGGGAGCCACAAAAGACAATGGGCATGTTGAGGCAGTGGCATTGGAATTATTTGATGCGAAACATCCTGAAGAATGCCAAACTGATTACCTGGAAAACTGTAGTGCTGATGCAAGGTTCCAAAGTCGATTGGACAATATGGATGTTTCTAGTAGTGATCCCTCTGGTGAGACATTGGATGGTGGAGTCATCCCTGTTGTAACTCCAGAGATAAAGAATGAATCACAGAGTATTCAGTCAACACCACATGATCATGTACCGAGTAATGATACCCTGCAATGTGGTCCAGAAGTTAGAAAGGAGATCATTGTCATAGGTGCTGGTCCTGCTGGCTTAACTGCTGCACGCCACTTGCAGCGTCAGGGGTTTTCAGTCAATGTACTTGAAGCTAGGAGTCGAATAGGAGGTCGTGTTTATACAGACCGGTCATCCCTATCAGTTGCAGTGGATCTTGGTGCTAGCATTATTACTGGTGTCGAGGCTGATTGGGCAACTGAAAGAAGACCCGATCCCTCCTCATTGGTTTGTGCTCAGTTGGGCCTTGAGTTGACTGTATTAAACAGTGATTGCCCTCTTTATGATATTGAAACAGGTCAAAAAGTTCCTGCAGATCTGGATGAGGCATTGGAAGCAGAGTTCAACAGCCTTCTTGATGACATGGTATTGCTTGTAGCACAGAAGGGAGAACGTGCAGCAAGAATGTCTCTTGAGGAAGGTTTTGAATATGTCCTTAAGAGGCGACGTATGGCACAATCAGGGAGTGCTAAAGAAAAAGAATTGCATGGTTCAAGGGATGGTTTGATTAATGCTAGAACAAATATTGATGGTAGAGTTGCTGATAAAAGTTATTGTAAGCAAGAGCTCTTGAGTCCTCTTGAGAGGAGGGTTATGGATTGGCATTTTGCTAATTTGGAGTATGGTTGTGCAGCTCCGCTTAAGGAGGTATCTCTACCCCATTGGAACCAAGATGATGTATATGGTGGCTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGCACTGTTGTTGAGTCTCTTGGAGAAGGACTGCGCATTCACTTGAATCATGTAGTCACTGATATTTCGTATGGCGCTGAGGATGGTGAATTGAATAATAACCAGTGTAACAAAGTCAAAGTTTCCACATCAAATGGGAGTATCTTTTGTGGAGATGCAGTCTTGATTACAGTGCCTCTTGGGTGCTTAAAAGCAGAAACCATAAAGTTTTCTCCACCATTGCCCCAGTGGAAACATTCTTCTATCACGCGGCTTGGATTTGGTGTTCTTAATAAAGTAGTTTTGGAATTTCCAGATGTCTTTTGGGATGACACTGTGGACTACTTTGGAGCAACTGCTGAAGAAACAGACCTGAGGGGTCAGTGCTTTATGTTCTGGAATATCAAGAAAACTGTTGGGGCTCCCGTTCTTATAGCTTTAGTGGTTGGTAAGGCAGCTATAGAAGGCCAAAATATGAGCTCTTCTGATCATGTTAACCATGCATTAGTGGCTCTCCGTAAATTGTTTGGAGAGGCATCAGTACCTGATCCAGTTGCATCAGTTGTGACAGATTGGGGCAGGGATCCTTTCAGCTATGGTGCATACTCATATGTTGCTGTCGGAGCTTCTGGAAAAGACTATGACATACTAGGGAGACCTGTTGATAACTGCCTATTTTTTGCTGGTGAAGCTACCTGCAAGGAGCATCCCGACACTGTTGGTGGTGCAATGATGAGTGGGCTTCGAGAGTCAGTGCGTATAATTGACATACTGACAACTGGAAATGATTACACAGCAGAAGCAGAAGCAATGGAGTCCATACAGAGACAGTCAGCCTCTGAAAAGGATGAAGTTTGGGACATAACAAGGAGACTTGATGCAGTTGAACTTTCCGATGTCCTTTACAAGAACAGGGAAGCCTTACTCCAGGACTTGTTCTTTAGTGCAAAAACCACCAAAGGAAGGTTGCATCTGGCCAAAGAGTTATTGAGTCTTCCTGTTGAAACGTTGAAGTCCTTTGCTGGCACCAAAGAGGGGCTAACCACACTTAACTTGTGGATACTGGACTCAATGGGGAAAGCGGGGACTCAACTCTTGCGGCATTGTGTTCGTCTTCTTGTTCTTGTGTCAACAGACCTACTGGCTGTGCGCTTGTCTGGCATTGGGAAAACCGTAAGAGAGAAAGTTTGTGTACATACTAGCCGTGATATACGTGCCATTGCAAGTCAGCTAGTTAGTGTGTGGCTTGAAGTCTTCCGCAGAGAAAAAGCTTCTAATGGAGGATTGAAATTGTCAAGGCAAGCCAATGGTGTAGATTCATTGAAGAGAAAAACAGTCAGAGACCCATCTTCTGGAAAGCCGCCACTACACATGTATCATGGTGCTTTTGAGCACAAAGGAAGTTTACAGGATTCTGCATCCACGGGAAGCCAATTGCCTCCGAATCCAAATGTGAAGAAATTGAATGGCAAAGGCATTAAACTTGAAACAGCAAATTCCTCAAGATTTGGAGATTCAACAGGCAGACCACATAATGATGACTTTGCTATGACTGAAGAAGAAAGAGCTGCCATTGCTGCTGCTGAAGCAGCGCGAGCTGCAGCACTTGCAGCTGCTAAGATTCGTGCCTTTGTGGATAAATTGATTGAGAAGCACATGGCAGTGAAGCCTGTTGTGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

1649

Amino Acids

179.4

Weight (kDa)

5.36

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	608 - 686	2.1e-12	SWIRM domain
Thi4	PF01946	855 - 893	6.3e-06	Thi4 family
DAO	PF01266	857 - 891	1.9e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	859 - 915	3.3e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	865 - 1343	1.1e-86	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16310 AT4G16310 AT4G16310 AT4G16310 AT4G16310
fragaria_vesca	FvH4_2g39110 FvH4_2g39110 FvH4_2g39110
malus_domestica	MD08G1017300.v1.1 MD15G1016200.v1.1 MD15G1018300.v1.1
prunus_persica	Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1 Prupe.1G370000_v2.0.a1
pyrus_communis	pycom08g01510 pycom15g01410 pycom15g01420
rosa_chinensis	RchiOBHm_Chr6g0302221
rosa_laevigata	RLG00000011185
rosa_multiflora	Rmu_sc0003633.1_g000002
rosa_roxburghii	Rroxscaffold_7G00165980
rosa_rugosa	Rorug06G0313100 Rorug06G0313200 Rorug06G0313300 Rorug06G0313300
rosa_samantha	Rh6AG425800 Rh6BG476500 Rh6CG438600 Rh6DG425700
rosa_wichuraiana	Rw6G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1206
AasI	GACNNNNNNGTC	1 cut(s)	1967
Acc16I	TGCGCA	1 cut(s)	3320
Acc36I	ACCTGC	1 cut(s)	3968
Acc65I	GGTACC	1 cut(s)	1073
AccB1I	GGYRCC	2 cut(s)	1073, 4289
AccB7I	CCANNNNNTGG	1 cut(s)	4616
AccBSI	CCGCTC	1 cut(s)	1613
AccII	CGCG	2 cut(s)	3535, 4858
AclI	AACGTT	1 cut(s)	4271
AclWI	GGATC	9 cut(s)	312, 492, 906, 2417, 2721, 2768, 3806, 3842, 3855
AcoI	YGGCCR	2 cut(s)	2194, 4239
AcsI	RAATTY	8 cut(s)	978, 1188, 1850, 1944, 2142, 2206, 3572, 4759
AcuI	CTGAAG	6 cut(s)	119, 1868, 2355, 3645, 4839, 4869
AfaI	GTAC	6 cut(s)	1075, 1144, 2523, 2646, 3807, 4458
AfiI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4227, 4299, 4616
AflII	CTTAAG	3 cut(s)	416, 2996, 3200
AflIII	ACRYGT	1 cut(s)	4635
AgeI	ACCGGT	1 cut(s)	2688
AhlI	ACTAGT	1 cut(s)	1490
AjnI	CCWGG	8 cut(s)	133, 687, 1368, 1996, 2092, 2196, 2355, 4191
AloI	GAACNNNNNNTCC	6 cut(s)	652, 684, 2885, 2917, 3534, 3566
Alw21I	GWGCWC	5 cut(s)	2797, 3129, 3262, 3746, 4659
AlwI	GGATC	9 cut(s)	312, 492, 906, 2417, 2721, 2768, 3806, 3842, 3855
AlwNI	CAGNNNCTG	7 cut(s)	1700, 1778, 1805, 1979, 2093, 3809, 4103
AoxI	GGCC	5 cut(s)	252, 2194, 2803, 3730, 4239
ApoI	RAATTY	8 cut(s)	978, 1188, 1850, 1944, 2142, 2206, 3572, 4759
ArsI	GACNNNNNNTTYG	4 cut(s)	320, 352, 2656, 2688
AseI	ATTAAT	1 cut(s)	3069
AsiGI	ACCGGT	1 cut(s)	2688
Asp700I	GAANNNNTTC	1 cut(s)	274
Asp718I	GGTACC	1 cut(s)	1073
AspLEI	GCGC	6 cut(s)	1623, 1872, 3321, 3362, 4416, 4858
AspS9I	GGNCC	7 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	5 cut(s)	1384, 1948, 2444, 3383, 3962
AsuNHI	GCTAGC	1 cut(s)	2723
AvaII	GGWCC	5 cut(s)	233, 356, 1832, 2549, 2588
AxyI	CCTNAGG	1 cut(s)	3638
BaeI	ACNNNNGTAYC	2 cut(s)	4622, 4655
BalI	TGGCCA	2 cut(s)	2196, 4241
BamHI	GGATCC	1 cut(s)	3847
BanI	GGYRCC	2 cut(s)	1073, 4289
BanII	GRGCYC	5 cut(s)	614, 3129, 3262, 3688, 3746
BbsI	GAAGAC	6 cut(s)	291, 1569, 2773, 4250, 4370, 4510
Bbv12I	GWGCWC	5 cut(s)	2797, 3129, 3262, 3746, 4659
BbvCI	CCTCAGC	1 cut(s)	3363
BceAI	ACGGC	1 cut(s)	4452
BcgI	CGANNNNNNTGC	4 cut(s)	1375, 1409, 4355, 4389
BciT130I	CCWGG	8 cut(s)	135, 689, 1370, 1998, 2094, 2198, 2357, 4193
BciVI	GTATCC	1 cut(s)	4317
BclI	TGATCA	4 cut(s)	757, 1702, 2515, 3751
BcnI	CCSGG	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	1490
BfmI	CTRYAG	5 cut(s)	1794, 2365, 2871, 3723, 4863
BfoI	RGCGCY	1 cut(s)	3363
BfrI	CTTAAG	3 cut(s)	416, 2996, 3200
BfuAI	ACCTGC	1 cut(s)	3968
BfuI	GTATCC	1 cut(s)	4317
BglII	AGATCT	8 cut(s)	827, 944, 1303, 1689, 1860, 1911, 2038, 2875
Bme1390I	CCNGG	9 cut(s)	135, 262, 689, 1370, 1998, 2094, 2198, 2357, 4193
Bme18I	GGWCC	5 cut(s)	233, 356, 1832, 2549, 2588
BmgT120I	GGNCC	7 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803
BmrFI	CCNGG	9 cut(s)	135, 262, 689, 1370, 1998, 2094, 2198, 2357, 4193
BmrI	ACTGGG	1 cut(s)	3505
BmtI	GCTAGC	1 cut(s)	2727
BmuI	ACTGGG	1 cut(s)	3505
BpiI	GAAGAC	6 cut(s)	291, 1569, 2773, 4250, 4370, 4510
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
BpmI	CTGGAG	4 cut(s)	192, 1601, 2454, 4175
Bpu10I	CCTNAGC	1 cut(s)	3363
BpuEI	CTTGAG	8 cut(s)	212, 816, 890, 2828, 2993, 3151, 3161, 4750
BpuMI	CCSGG	1 cut(s)	262
Bsa29I	ATCGAT	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	4478
BsaBI	GATNNNNATC	1 cut(s)	1144
BsaI	GGTCTC	3 cut(s)	427, 3913, 4599
BsaJI	CCNNGG	7 cut(s)	134, 204, 438, 1122, 1628, 1997, 4686
BsaWI	WCCGGW	2 cut(s)	358, 2688
Bsc4I	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4227, 4299, 4616
Bse118I	RCCGGY	1 cut(s)	2688
Bse21I	CCTNAGG	1 cut(s)	3638
Bse3DI	GCAATG	6 cut(s)	2549, 3503, 3999, 4080, 4482, 4836
Bse8I	GATNNNNATC	1 cut(s)	1144
BseBI	CCWGG	8 cut(s)	135, 689, 1370, 1998, 2094, 2198, 2357, 4193
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	7 cut(s)	134, 204, 438, 1122, 1628, 1997, 4686
BseJI	GATNNNNATC	1 cut(s)	1144
BseLI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4227, 4299, 4616
BseMI	GCAATG	6 cut(s)	2549, 3503, 3999, 4080, 4482, 4836
BseRI	GAGGAG	6 cut(s)	191, 355, 1509, 1514, 2770, 3160
BsgI	GTGCAG	5 cut(s)	314, 1173, 2592, 2976, 3210
Bsh1236I	CGCG	2 cut(s)	3535, 4858
BshFI	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
BshNI	GGYRCC	2 cut(s)	1073, 4289
BshTI	ACCGGT	1 cut(s)	2688
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	5 cut(s)	2797, 3129, 3262, 3746, 4659
BsiSI	CCGG	4 cut(s)	255, 261, 359, 2689
BslFI	GGGAC	3 cut(s)	204, 4136, 4363
BslI	CCNNNNNNNGG	8 cut(s)	124, 261, 1965, 2016, 2017, 4227, 4299, 4616
BsmBI	CGTCTC	2 cut(s)	3, 1590
BsmFI	GGGAC	3 cut(s)	204, 4136, 4363
BsmI	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3321
BsnI	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
Bso31I	GGTCTC	3 cut(s)	427, 3913, 4599
Bsp1286I	GDGCHC	7 cut(s)	614, 2797, 3129, 3262, 3688, 3746, 4659
Bsp1407I	TGTACA	2 cut(s)	1142, 4456
BspANI	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	2 cut(s)	3535, 4858
BspMAI	CTGCAG	3 cut(s)	1798, 2875, 4867
BspMI	ACCTGC	1 cut(s)	3968
BspOI	GCTAGC	1 cut(s)	2727
BspPI	GGATC	9 cut(s)	312, 492, 906, 2417, 2721, 2768, 3806, 3842, 3855
BspQI	GCTCTTC	2 cut(s)	725, 3751
BspT107I	GGYRCC	2 cut(s)	1073, 4289
BspTI	CTTAAG	3 cut(s)	416, 2996, 3200
BspTNI	GGTCTC	3 cut(s)	427, 3913, 4599
BsrBI	CCGCTC	1 cut(s)	1613
BsrDI	GCAATG	6 cut(s)	2549, 3503, 3999, 4080, 4482, 4836
BsrFI	RCCGGY	1 cut(s)	2688
BsrGI	TGTACA	2 cut(s)	1142, 4456
BssAI	RCCGGY	1 cut(s)	2688
BssECI	CCNNGG	7 cut(s)	134, 204, 438, 1122, 1628, 1997, 4686
BssT1I	CCWWGG	2 cut(s)	204, 438
Bst2UI	CCWGG	8 cut(s)	135, 689, 1370, 1998, 2094, 2198, 2357, 4193
Bst6I	CTCTTC	9 cut(s)	11, 29, 98, 572, 725, 1323, 1762, 3751, 4583
BstAFI	CTTAAG	3 cut(s)	416, 2996, 3200
BstAPI	GCANNNNNTGC	2 cut(s)	1805, 4871
BstAUI	TGTACA	2 cut(s)	1142, 4456
BstBAI	YACGTR	1 cut(s)	4478
BstDSI	CCRYGG	3 cut(s)	1122, 1628, 4686
BstFNI	CGCG	2 cut(s)	3535, 4858
BstH2I	RGCGCY	1 cut(s)	3363
BstHHI	GCGC	6 cut(s)	1623, 1872, 3321, 3362, 4416, 4858
BstNI	CCWGG	8 cut(s)	135, 689, 1370, 1998, 2094, 2198, 2357, 4193
BstNSI	RCATGY	3 cut(s)	646, 2294, 4639
BstSCI	CCNGG	9 cut(s)	133, 260, 687, 1368, 1996, 2092, 2196, 2355, 4191
BstSFI	CTRYAG	5 cut(s)	1794, 2365, 2871, 3723, 4863
BstUI	CGCG	2 cut(s)	3535, 4858
BstV2I	GAAGAC	6 cut(s)	291, 1569, 2773, 4250, 4370, 4510
Bsu15I	ATCGAT	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	3638
BsuI	GTATCC	1 cut(s)	4317
BsuRI	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	3 cut(s)	1122, 1628, 4686
BtsI	GCAGTG	6 cut(s)	92, 1006, 1806, 2307, 2715, 4932
BveI	ACCTGC	1 cut(s)	3968
CaiI	CAGNNNCTG	7 cut(s)	1700, 1778, 1805, 1979, 2093, 3809, 4103
CfoI	GCGC	6 cut(s)	1623, 1872, 3321, 3362, 4416, 4858
Cfr10I	RCCGGY	1 cut(s)	2688
Cfr13I	GGNCC	7 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	1 cut(s)	2612
CsiI	ACCWGGT	1 cut(s)	2092
Csp6I	GTAC	6 cut(s)	1074, 1143, 2522, 2645, 3806, 4457
CspAI	ACCGGT	1 cut(s)	2688
CviQI	GTAC	6 cut(s)	1074, 1143, 2522, 2645, 3806, 4457
DraI	TTTAAA	1 cut(s)	912
DrdI	GACNNNNNNGTC	1 cut(s)	1967
DseDI	GACNNNNNNGTC	1 cut(s)	1967
EaeI	YGGCCR	2 cut(s)	2194, 4239
Eam1104I	CTCTTC	9 cut(s)	11, 29, 98, 572, 725, 1323, 1762, 3751, 4583
EarI	CTCTTC	9 cut(s)	11, 29, 98, 572, 725, 1323, 1762, 3751, 4583
EciI	GGCGGA	1 cut(s)	969
Ecl136II	GAGCTC	3 cut(s)	3127, 3260, 3744
Eco130I	CCWWGG	2 cut(s)	204, 438
Eco24I	GRGCYC	5 cut(s)	614, 3129, 3262, 3688, 3746
Eco31I	GGTCTC	3 cut(s)	427, 3913, 4599
Eco32I	GATATC	1 cut(s)	1359
Eco47I	GGWCC	5 cut(s)	233, 356, 1832, 2549, 2588
Eco53kI	GAGCTC	3 cut(s)	3127, 3260, 3744
Eco57I	CTGAAG	6 cut(s)	119, 1868, 2355, 3645, 4839, 4869
Eco81I	CCTNAGG	1 cut(s)	3638
EcoICRI	GAGCTC	3 cut(s)	3127, 3260, 3744
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	2206
EcoRII	CCWGG	8 cut(s)	133, 687, 1368, 1996, 2092, 2196, 2355, 4191
EcoRV	GATATC	1 cut(s)	1359
EcoT14I	CCWWGG	2 cut(s)	204, 438
EcoT22I	ATGCAT	2 cut(s)	2032, 3769
EcoT38I	GRGCYC	5 cut(s)	614, 3129, 3262, 3688, 3746
ErhI	CCWWGG	2 cut(s)	204, 438
Esp3I	CGTCTC	2 cut(s)	3, 1590
FalI	AAGNNNNNCTT	2 cut(s)	1847, 1879
FaqI	GGGAC	3 cut(s)	204, 4136, 4363
FauI	CCCGC	2 cut(s)	1871, 4339
FauNDI	CATATG	1 cut(s)	3874
FbaI	TGATCA	4 cut(s)	757, 1702, 2515, 3751
FriOI	GRGCYC	5 cut(s)	614, 3129, 3262, 3688, 3746
FspI	TGCGCA	1 cut(s)	3320
GlaI	GCGC	6 cut(s)	1622, 1871, 3320, 3361, 4415, 4857
GsuI	CTGGAG	4 cut(s)	192, 1601, 2454, 4175
HaeII	RGCGCY	1 cut(s)	3363
HaeIII	GGCC	5 cut(s)	254, 2196, 2805, 3732, 4241
HapII	CCGG	4 cut(s)	255, 261, 359, 2689
HgaI	GACGC	1 cut(s)	2612
HhaI	GCGC	6 cut(s)	1623, 1872, 3321, 3362, 4416, 4858
Hin6I	GCGC	6 cut(s)	1621, 1870, 3319, 3360, 4414, 4856
HinP1I	GCGC	6 cut(s)	1621, 1870, 3319, 3360, 4414, 4856
HincII	GTYRAC	4 cut(s)	2505, 2814, 3760, 4395
HindII	GTYRAC	4 cut(s)	2505, 2814, 3760, 4395
HindIII	AAGCTT	1 cut(s)	4533
HpaI	GTTAAC	1 cut(s)	3760
HpaII	CCGG	4 cut(s)	255, 261, 359, 2689
HphI	GGTGA	5 cut(s)	1384, 1948, 2444, 3383, 3962
Hpy166II	GTNNAC	9 cut(s)	1046, 1122, 2505, 2814, 3604, 3760, 4395, 4457, 4670
Hpy8I	GTNNAC	9 cut(s)	1046, 1122, 2505, 2814, 3604, 3760, 4395, 4457, 4670
Hpy99I	CGWCG	1 cut(s)	3009
HpyCH4IV	ACGT	4 cut(s)	2953, 3007, 4271, 4477
HpySE526I	ACGT	4 cut(s)	2953, 3007, 4271, 4477
HspAI	GCGC	6 cut(s)	1621, 1870, 3319, 3360, 4414, 4856
KpnI	GGTACC	1 cut(s)	1077
Ksp22I	TGATCA	4 cut(s)	757, 1702, 2515, 3751
KspAI	GTTAAC	1 cut(s)	3760
LguI	GCTCTTC	2 cut(s)	725, 3751
MabI	ACCWGGT	1 cut(s)	2092
MaeII	ACGT	4 cut(s)	2953, 3007, 4271, 4477
MbiI	CCGCTC	1 cut(s)	1613
MfeI	CAATTG	2 cut(s)	2157, 4697
MhlI	GDGCHC	7 cut(s)	614, 2797, 3129, 3262, 3688, 3746, 4659
MlsI	TGGCCA	2 cut(s)	2196, 4241
MluNI	TGGCCA	2 cut(s)	2196, 4241
MmeI	TCCRAC	6 cut(s)	120, 300, 610, 723, 2041, 3865
Mox20I	TGGCCA	2 cut(s)	2196, 4241
Mph1103I	ATGCAT	2 cut(s)	2032, 3769
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	2 cut(s)	2196, 4241
MslI	CAYNNNNRTG	5 cut(s)	647, 1206, 2517, 4800, 4925
Msp20I	TGGCCA	2 cut(s)	2196, 4241
MspA1I	CMGCKG	1 cut(s)	4877
MspCI	CTTAAG	3 cut(s)	416, 2996, 3200
MspI	CCGG	4 cut(s)	255, 261, 359, 2689
MspR9I	CCNGG	9 cut(s)	135, 262, 689, 1370, 1998, 2094, 2198, 2357, 4193
MunI	CAATTG	2 cut(s)	2157, 4697
Mva1269I	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3321
MvaI	CCWGG	8 cut(s)	135, 689, 1370, 1998, 2094, 2198, 2357, 4193
MvnI	CGCG	2 cut(s)	3535, 4858
NciI	CCSGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	3874
NheI	GCTAGC	1 cut(s)	2723
NmeAIII	GCCGAG	1 cut(s)	2098
NmuCI	GTSAC	7 cut(s)	90, 1015, 1079, 1718, 1969, 3340, 3829
NsbI	TGCGCA	1 cut(s)	3320
NsiI	ATGCAT	2 cut(s)	2032, 3769
NspI	RCATGY	3 cut(s)	646, 2294, 4639
PaeI	GCATGC	1 cut(s)	646
PciI	ACATGT	1 cut(s)	4635
PciSI	GCTCTTC	2 cut(s)	725, 3751
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PctI	GAATGC	5 cut(s)	1339, 1639, 1904, 2345, 3321
PdmI	GAANNNNTTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	4616
PfoI	TCCNGGA	1 cut(s)	4191
PinAI	ACCGGT	1 cut(s)	2688
Ppu21I	YACGTR	1 cut(s)	4478
PpuMI	RGGWCCY	1 cut(s)	233
PscI	ACATGT	1 cut(s)	4635
PshBI	ATTAAT	1 cut(s)	3069
PsiI	TTATAA	1 cut(s)	1206
Psp124BI	GAGCTC	3 cut(s)	3129, 3262, 3746
Psp1406I	AACGTT	1 cut(s)	4271
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	8 cut(s)	133, 687, 1368, 1996, 2092, 2196, 2355, 4191
PspGI	CCWGG	8 cut(s)	133, 687, 1368, 1996, 2092, 2196, 2355, 4191
PspPI	GGNCC	7 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803
PspPPI	RGGWCCY	1 cut(s)	233
PstI	CTGCAG	3 cut(s)	1798, 2875, 4867
PstNI	CAGNNNCTG	7 cut(s)	1700, 1778, 1805, 1979, 2093, 3809, 4103
PvuII	CAGCTG	1 cut(s)	4877
RsaI	GTAC	6 cut(s)	1075, 1144, 2523, 2646, 3807, 4458
RsaNI	GTAC	6 cut(s)	1074, 1143, 2522, 2645, 3806, 4457
RseI	CAYNNNNRTG	5 cut(s)	647, 1206, 2517, 4800, 4925
SacI	GAGCTC	3 cut(s)	3129, 3262, 3746
SapI	GCTCTTC	2 cut(s)	725, 3751
Sau96I	GGNCC	7 cut(s)	233, 252, 356, 1832, 2549, 2588, 2803
ScrFI	CCNGG	9 cut(s)	135, 262, 689, 1370, 1998, 2094, 2198, 2357, 4193
SduI	GDGCHC	7 cut(s)	614, 2797, 3129, 3262, 3688, 3746, 4659
SexAI	ACCWGGT	1 cut(s)	2092
SfcI	CTRYAG	5 cut(s)	1794, 2365, 2871, 3723, 4863
SinI	GGWCC	5 cut(s)	233, 356, 1832, 2549, 2588
SmiMI	CAYNNNNRTG	5 cut(s)	647, 1206, 2517, 4800, 4925
SpeI	ACTAGT	1 cut(s)	1490
SphI	GCATGC	1 cut(s)	646
SspI	AATATT	1 cut(s)	3085
SstI	GAGCTC	3 cut(s)	3129, 3262, 3746
StyD4I	CCNGG	9 cut(s)	133, 260, 687, 1368, 1996, 2092, 2196, 2355, 4191
StyI	CCWWGG	2 cut(s)	204, 438
TaiI	ACGT	4 cut(s)	2956, 3010, 4274, 4480
TatI	WGTACW	3 cut(s)	1142, 2644, 4456
TauI	GCSGC	3 cut(s)	3538, 4366, 4627
TseFI	GTSAC	7 cut(s)	90, 1015, 1079, 1718, 1969, 3340, 3829
Tsp45I	GTSAC	7 cut(s)	90, 1015, 1079, 1718, 1969, 3340, 3829
TspDTI	ATGAA	8 cut(s)	900, 1341, 1461, 2007, 2176, 2499, 4128, 4572
TspGWI	ACGGA	3 cut(s)	1139, 1645, 3770
Van91I	CCANNNNNTGG	1 cut(s)	4616
Vha464I	CTTAAG	3 cut(s)	416, 2996, 3200
VpaK11BI	GGWCC	5 cut(s)	233, 356, 1832, 2549, 2588
VspI	ATTAAT	1 cut(s)	3069
XapI	RAATTY	8 cut(s)	978, 1188, 1850, 1944, 2142, 2206, 3572, 4759
XbaI	TCTAGA	1 cut(s)	2035
XceI	RCATGY	3 cut(s)	646, 2294, 4639
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3510, 3585
XmnI	GAANNNNTTC	1 cut(s)	274
Zsp2I	ATGCAT	2 cut(s)	2032, 3769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.