DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31210 AT4G31210 AT4G31210 |
| fragaria_vesca | FvH4_2g36580 FvH4_2g36580 FvH4_2g36580 FvH4_2g36580 FvH4_2g36580 |
| malus_domestica | MD08G1125900.v1.1 MD15G1105700.v1.1 |
| prunus_persica | Prupe.1G457500_v2.0.a1 Prupe.1G457500_v2.0.a1 Prupe.1G457500_v2.0.a1 Prupe.1G457500_v2.0.a1 |
| pyrus_communis | pycom08g10500 pycom15g09590 |
| rosa_chinensis | RchiOBHm_Chr6g0305241 |
| rosa_laevigata | RLG00000010838 RLG00000010906 |
| rosa_roxburghii | Rroxscaffold_7G00163020 |
| rosa_rugosa | Rorug06G0338800 Rorug06G0338900 |
| rosa_samantha | Rh6AG450500 Rh6BG450900 Rh6CG464400 Rh6DG451100 |
| rosa_wichuraiana | Rw6G039260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 3440 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3335 |
| AccBSI | CCGCTC | 2 cut(s) | 105, 2361 |
| AccI | GTMKAC | 2 cut(s) | 189, 3490 |
| AccII | CGCG | 3 cut(s) | 431, 1475, 2496 |
| AccIII | TCCGGA | 1 cut(s) | 224 |
| AclWI | GGATC | 5 cut(s) | 694, 1231, 1337, 2495, 2508 |
| AcoI | YGGCCR | 2 cut(s) | 111, 246 |
| AcuI | CTGAAG | 3 cut(s) | 1100, 1904, 3191 |
| AdeI | CACNNNGTG | 1 cut(s) | 1532 |
| AfaI | GTAC | 5 cut(s) | 1230, 2258, 2475, 2863, 3198 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 109, 300, 1100, 1101, 1190, 1603, 3256, 3331, 3335 |
| AflIII | ACRYGT | 1 cut(s) | 1167 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3344 |
| AjnI | CCWGG | 5 cut(s) | 1277, 1430, 1588, 2386, 3145 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 262, 294, 437, 469, 2895, 2927 |
| Alw21I | GWGCWC | 3 cut(s) | 1537, 2372, 2538 |
| Alw26I | GTCTC | 5 cut(s) | 101, 391, 733, 2910, 3315 |
| AlwI | GGATC | 5 cut(s) | 694, 1231, 1337, 2495, 2508 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 809, 1226, 1346, 2132 |
| Ama87I | CYCGRG | 1 cut(s) | 3440 |
| Aor13HI | TCCGGA | 1 cut(s) | 224 |
| AoxI | GGCC | 8 cut(s) | 111, 246, 266, 362, 1458, 2172, 2397, 2815 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2909, 2941 |
| AseI | ATTAAT | 1 cut(s) | 1836 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 199, 1179, 1848, 2611, 3162 |
| AspLEI | GCGC | 7 cut(s) | 431, 1475, 1477, 2088, 2496, 3289, 3393 |
| AspS9I | GGNCC | 8 cut(s) | 24, 266, 362, 1510, 2173, 2835, 3095, 3179 |
| AsuHPI | GGTGA | 5 cut(s) | 1175, 1557, 3083, 3218, 3427 |
| AsuII | TTCGAA | 1 cut(s) | 2203 |
| AsuNHI | GCTAGC | 1 cut(s) | 2624 |
| AvaI | CYCGRG | 1 cut(s) | 3440 |
| AvaII | GGWCC | 5 cut(s) | 24, 1510, 2835, 3095, 3179 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 711, 744 |
| BalI | TGGCCA | 1 cut(s) | 113 |
| BamHI | GGATCC | 1 cut(s) | 2500 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1073, 1105, 3032, 3064 |
| BauI | CACGAG | 1 cut(s) | 1488 |
| BbsI | GAAGAC | 3 cut(s) | 2614, 3216, 3224 |
| Bbv12I | GWGCWC | 3 cut(s) | 1537, 2372, 2538 |
| BceAI | ACGGC | 5 cut(s) | 261, 1544, 1885, 2384, 2658 |
| BciT130I | CCWGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| BciVI | GTATCC | 2 cut(s) | 2223, 3256 |
| BclI | TGATCA | 3 cut(s) | 240, 2028, 3028 |
| BcoDI | GTCTC | 5 cut(s) | 101, 391, 733, 2910, 3315 |
| BfaI | CTAG | 5 cut(s) | 609, 1185, 1215, 2625, 3134 |
| BfmI | CTRYAG | 2 cut(s) | 1425, 1692 |
| BfuI | GTATCC | 2 cut(s) | 2223, 3256 |
| Bme1390I | CCNGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| Bme18I | GGWCC | 5 cut(s) | 24, 1510, 2835, 3095, 3179 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3344 |
| BmeT110I | CYCGRG | 1 cut(s) | 3440 |
| BmgT120I | GGNCC | 8 cut(s) | 24, 266, 362, 1510, 2173, 2835, 3095, 3179 |
| BmiI | GGNNCC | 5 cut(s) | 2298, 2502, 2837, 3123, 3151 |
| BmrFI | CCNGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| BmrI | ACTGGG | 1 cut(s) | 1110 |
| BmsI | GCATC | 9 cut(s) | 108, 621, 1346, 1377, 1393, 1918, 2132, 3179, 3436 |
| BmtI | GCTAGC | 1 cut(s) | 2628 |
| BmuI | ACTGGG | 1 cut(s) | 1110 |
| BpiI | GAAGAC | 3 cut(s) | 2614, 3216, 3224 |
| BpmI | CTGGAG | 2 cut(s) | 783, 3311 |
| Bpu10I | CCTNAGC | 2 cut(s) | 76, 209 |
| Bpu14I | TTCGAA | 1 cut(s) | 2203 |
| BpuEI | CTTGAG | 5 cut(s) | 444, 2151, 2356, 2406, 2513 |
| BsaAI | YACGTR | 1 cut(s) | 1412 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1347, 2212 |
| BsaI | GGTCTC | 2 cut(s) | 733, 3315 |
| BsaJI | CCNNGG | 8 cut(s) | 108, 723, 1431, 1809, 2091, 2386, 2736, 3315 |
| BsaWI | WCCGGW | 1 cut(s) | 224 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 477, 507, 2533, 2563 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 109, 300, 1100, 1101, 1190, 1603, 3256, 3331, 3335 |
| Bse1I | ACTGG | 5 cut(s) | 294, 1105, 1597, 2580, 3344 |
| Bse3DI | GCAATG | 1 cut(s) | 3051 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1347, 2212 |
| BseAI | TCCGGA | 1 cut(s) | 224 |
| BseBI | CCWGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| BseDI | CCNNGG | 8 cut(s) | 108, 723, 1431, 1809, 2091, 2386, 2736, 3315 |
| BseJI | GATNNNNATC | 2 cut(s) | 1347, 2212 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 109, 300, 1100, 1101, 1190, 1603, 3256, 3331, 3335 |
| BseMI | GCAATG | 1 cut(s) | 3051 |
| BseMII | CTCAG | 3 cut(s) | 218, 1446, 2556 |
| BseNI | ACTGG | 5 cut(s) | 294, 1105, 1597, 2580, 3344 |
| BsePI | GCGCGC | 1 cut(s) | 1473 |
| BseRI | GAGGAG | 2 cut(s) | 2541, 2606 |
| BseYI | CCCAGC | 2 cut(s) | 954, 1747 |
| BsgI | GTGCAG | 2 cut(s) | 2118, 3027 |
| Bsh1236I | CGCG | 3 cut(s) | 431, 1475, 2496 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3490 |
| BshFI | GGCC | 8 cut(s) | 113, 248, 268, 364, 1460, 2174, 2399, 2817 |
| BsiEI | CGRYCG | 1 cut(s) | 3490 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1537, 2372, 2538 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3440 |
| BsiSI | CCGG | 1 cut(s) | 225 |
| BslFI | GGGAC | 1 cut(s) | 1217 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 109, 300, 1100, 1101, 1190, 1603, 3256, 3331, 3335 |
| BsmAI | GTCTC | 5 cut(s) | 101, 391, 733, 2910, 3315 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmFI | GGGAC | 1 cut(s) | 1217 |
| BsmI | GAATGC | 2 cut(s) | 1738, 2167 |
| BsnI | GGCC | 8 cut(s) | 113, 248, 268, 364, 1460, 2174, 2399, 2817 |
| Bso31I | GGTCTC | 2 cut(s) | 733, 3315 |
| BsoBI | CYCGRG | 1 cut(s) | 3440 |
| Bsp119I | TTCGAA | 1 cut(s) | 2203 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1537, 2372, 2538 |
| Bsp13I | TCCGGA | 1 cut(s) | 224 |
| Bsp1407I | TGTACA | 2 cut(s) | 2256, 3196 |
| Bsp143I | GATC | 8 cut(s) | 240, 686, 1223, 1342, 1348, 2028, 2500, 3028 |
| Bsp19I | CCATGG | 2 cut(s) | 108, 2091 |
| BspANI | GGCC | 8 cut(s) | 113, 248, 268, 364, 1460, 2174, 2399, 2817 |
| BspCNI | CTCAG | 3 cut(s) | 217, 1447, 2557 |
| BspEI | TCCGGA | 1 cut(s) | 224 |
| BspFNI | CGCG | 3 cut(s) | 431, 1475, 2496 |
| BspHI | TCATGA | 2 cut(s) | 1444, 2458 |
| BspLI | GGNNCC | 5 cut(s) | 2298, 2502, 2837, 3123, 3151 |
| BspMAI | CTGCAG | 1 cut(s) | 1696 |
| BspOI | GCTAGC | 1 cut(s) | 2628 |
| BspPI | GGATC | 5 cut(s) | 694, 1231, 1337, 2495, 2508 |
| BspQI | GCTCTTC | 2 cut(s) | 1638, 2368 |
| BspT104I | TTCGAA | 1 cut(s) | 2203 |
| BspTNI | GGTCTC | 2 cut(s) | 733, 3315 |
| BsrBI | CCGCTC | 2 cut(s) | 105, 2361 |
| BsrDI | GCAATG | 1 cut(s) | 3051 |
| BsrGI | TGTACA | 2 cut(s) | 2256, 3196 |
| BsrI | ACTGG | 5 cut(s) | 294, 1105, 1597, 2580, 3344 |
| BssECI | CCNNGG | 8 cut(s) | 108, 723, 1431, 1809, 2091, 2386, 2736, 3315 |
| BssHII | GCGCGC | 1 cut(s) | 1473 |
| BssMI | GATC | 8 cut(s) | 240, 686, 1223, 1342, 1348, 2028, 2500, 3028 |
| BssNAI | GTATAC | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 1488 |
| BssT1I | CCWWGG | 4 cut(s) | 108, 723, 2091, 3315 |
| Bst1107I | GTATAC | 1 cut(s) | 190 |
| Bst2BI | CACGAG | 1 cut(s) | 1488 |
| Bst2UI | CCWGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| Bst6I | CTCTTC | 4 cut(s) | 1638, 2368, 2447, 2940 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 809, 1532, 2955 |
| BstAUI | TGTACA | 2 cut(s) | 2256, 3196 |
| BstBAI | YACGTR | 1 cut(s) | 1412 |
| BstBI | TTCGAA | 1 cut(s) | 2203 |
| BstDSI | CCRYGG | 2 cut(s) | 108, 2091 |
| BstFNI | CGCG | 3 cut(s) | 431, 1475, 2496 |
| BstHHI | GCGC | 7 cut(s) | 431, 1475, 1477, 2088, 2496, 3289, 3393 |
| BstKTI | GATC | 8 cut(s) | 243, 689, 1226, 1345, 1351, 2031, 2503, 3031 |
| BstMAI | GTCTC | 5 cut(s) | 101, 391, 733, 2910, 3315 |
| BstMBI | GATC | 8 cut(s) | 240, 686, 1223, 1342, 1348, 2028, 2500, 3028 |
| BstMCI | CGRYCG | 1 cut(s) | 3490 |
| BstNI | CCWGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| BstNSI | RCATGY | 3 cut(s) | 1171, 2289, 2958 |
| BstSCI | CCNGG | 5 cut(s) | 1277, 1430, 1588, 2386, 3145 |
| BstSFI | CTRYAG | 2 cut(s) | 1425, 1692 |
| BstUI | CGCG | 3 cut(s) | 431, 1475, 2496 |
| BstV2I | GAAGAC | 3 cut(s) | 2614, 3216, 3224 |
| BstX2I | RGATCY | 4 cut(s) | 686, 1223, 1342, 2500 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1575 |
| BstYI | RGATCY | 4 cut(s) | 686, 1223, 1342, 2500 |
| BstZ17I | GTATAC | 1 cut(s) | 190 |
| BsuI | GTATCC | 2 cut(s) | 2223, 3256 |
| BsuRI | GGCC | 8 cut(s) | 113, 248, 268, 364, 1460, 2174, 2399, 2817 |
| BtgI | CCRYGG | 2 cut(s) | 108, 2091 |
| BtgZI | GCGATG | 1 cut(s) | 20 |
| BtsI | GCAGTG | 1 cut(s) | 128 |
| CaiI | CAGNNNCTG | 4 cut(s) | 809, 1226, 1346, 2132 |
| CciI | TCATGA | 2 cut(s) | 1444, 2458 |
| CfoI | GCGC | 7 cut(s) | 431, 1475, 1477, 2088, 2496, 3289, 3393 |
| Cfr13I | GGNCC | 8 cut(s) | 24, 266, 362, 1510, 2173, 2835, 3095, 3179 |
| CsiI | ACCWGGT | 1 cut(s) | 1588 |
| Csp6I | GTAC | 5 cut(s) | 1229, 2257, 2474, 2862, 3197 |
| CviQI | GTAC | 5 cut(s) | 1229, 2257, 2474, 2862, 3197 |
| DpnI | GATC | 8 cut(s) | 242, 688, 1225, 1344, 1350, 2030, 2502, 3030 |
| DpnII | GATC | 8 cut(s) | 240, 686, 1223, 1342, 1348, 2028, 2500, 3028 |
| DraI | TTTAAA | 2 cut(s) | 1669, 3354 |
| DraIII | CACNNNGTG | 1 cut(s) | 1532 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3344 |
| EaeI | YGGCCR | 2 cut(s) | 111, 246 |
| Eam1104I | CTCTTC | 4 cut(s) | 1638, 2368, 2447, 2940 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3344 |
| EarI | CTCTTC | 4 cut(s) | 1638, 2368, 2447, 2940 |
| EciI | GGCGGA | 3 cut(s) | 76, 89, 899 |
| Eco130I | CCWWGG | 4 cut(s) | 108, 723, 2091, 3315 |
| Eco147I | AGGCCT | 2 cut(s) | 1460, 2817 |
| Eco31I | GGTCTC | 2 cut(s) | 733, 3315 |
| Eco32I | GATATC | 2 cut(s) | 2393, 3305 |
| Eco47I | GGWCC | 5 cut(s) | 24, 1510, 2835, 3095, 3179 |
| Eco57I | CTGAAG | 3 cut(s) | 1100, 1904, 3191 |
| Eco88I | CYCGRG | 1 cut(s) | 3440 |
| EcoO109I | RGGNCCY | 2 cut(s) | 362, 3179 |
| EcoRI | GAATTC | 1 cut(s) | 3265 |
| EcoRII | CCWGG | 5 cut(s) | 1277, 1430, 1588, 2386, 3145 |
| EcoRV | GATATC | 2 cut(s) | 2393, 3305 |
| EcoT14I | CCWWGG | 4 cut(s) | 108, 723, 2091, 3315 |
| EcoT22I | ATGCAT | 1 cut(s) | 3451 |
| ErhI | CCWWGG | 4 cut(s) | 108, 723, 2091, 3315 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2805, 2837 |
| FaqI | GGGAC | 1 cut(s) | 1217 |
| FauI | CCCGC | 8 cut(s) | 55, 424, 965, 1102, 1597, 2014, 2489, 2564 |
| FauNDI | CATATG | 1 cut(s) | 2620 |
| FbaI | TGATCA | 3 cut(s) | 240, 2028, 3028 |
| FblI | GTMKAC | 2 cut(s) | 189, 3490 |
| FspBI | CTAG | 5 cut(s) | 609, 1185, 1215, 2625, 3134 |
| GlaI | GCGC | 7 cut(s) | 430, 1474, 1476, 2087, 2495, 3288, 3392 |
| GsaI | CCCAGC | 2 cut(s) | 958, 1751 |
| GsuI | CTGGAG | 2 cut(s) | 783, 3311 |
| HaeIII | GGCC | 8 cut(s) | 113, 248, 268, 364, 1460, 2174, 2399, 2817 |
| HapII | CCGG | 1 cut(s) | 225 |
| HhaI | GCGC | 7 cut(s) | 431, 1475, 1477, 2088, 2496, 3289, 3393 |
| Hin6I | GCGC | 7 cut(s) | 429, 1473, 1475, 2086, 2494, 3287, 3391 |
| HinP1I | GCGC | 7 cut(s) | 429, 1473, 1475, 2086, 2494, 3287, 3391 |
| HincII | GTYRAC | 1 cut(s) | 3491 |
| HindII | GTYRAC | 1 cut(s) | 3491 |
| HindIII | AAGCTT | 4 cut(s) | 542, 636, 1970, 3455 |
| HpaII | CCGG | 1 cut(s) | 225 |
| HphI | GGTGA | 5 cut(s) | 1175, 1557, 3083, 3218, 3427 |
| Hpy166II | GTNNAC | 4 cut(s) | 39, 190, 2259, 3491 |
| Hpy8I | GTNNAC | 4 cut(s) | 39, 190, 2259, 3491 |
| HpyAV | CCTTC | 9 cut(s) | 661, 1135, 1349, 1753, 2441, 2622, 2629, 2966, 3358 |
| HpyCH4IV | ACGT | 4 cut(s) | 310, 1231, 1411, 3243 |
| HpySE526I | ACGT | 4 cut(s) | 310, 1231, 1411, 3243 |
| HspAI | GCGC | 7 cut(s) | 429, 1473, 1475, 2086, 2494, 3287, 3391 |
| Kpn2I | TCCGGA | 1 cut(s) | 224 |
| Ksp22I | TGATCA | 3 cut(s) | 240, 2028, 3028 |
| Kzo9I | GATC | 8 cut(s) | 240, 686, 1223, 1342, 1348, 2028, 2500, 3028 |
| LguI | GCTCTTC | 2 cut(s) | 1638, 2368 |
| LmnI | GCTCC | 8 cut(s) | 110, 434, 1316, 2093, 2296, 2533, 2593, 3155 |
| LweI | GCATC | 9 cut(s) | 108, 621, 1346, 1377, 1393, 1918, 2132, 3179, 3436 |
| MabI | ACCWGGT | 1 cut(s) | 1588 |
| MaeI | CTAG | 5 cut(s) | 609, 1185, 1215, 2625, 3134 |
| MaeII | ACGT | 4 cut(s) | 310, 1231, 1411, 3243 |
| MaeIII | GTNAC | 5 cut(s) | 832, 1163, 2659, 2740, 3310 |
| MalI | GATC | 8 cut(s) | 242, 688, 1225, 1344, 1350, 2030, 2502, 3030 |
| MbiI | CCGCTC | 2 cut(s) | 105, 2361 |
| MboI | GATC | 8 cut(s) | 240, 686, 1223, 1342, 1348, 2028, 2500, 3028 |
| MfeI | CAATTG | 2 cut(s) | 2307, 3396 |
| MflI | RGATCY | 4 cut(s) | 686, 1223, 1342, 2500 |
| MhlI | GDGCHC | 3 cut(s) | 1537, 2372, 2538 |
| MlsI | TGGCCA | 1 cut(s) | 113 |
| MluNI | TGGCCA | 1 cut(s) | 113 |
| MlyI | GAGTC | 6 cut(s) | 1133, 1276, 1620, 2354, 2464, 3004 |
| MmeI | TCCRAC | 1 cut(s) | 2255 |
| Mox20I | TGGCCA | 1 cut(s) | 113 |
| Mph1103I | ATGCAT | 1 cut(s) | 3451 |
| MroI | TCCGGA | 1 cut(s) | 224 |
| MroXI | GAANNNNTTC | 5 cut(s) | 199, 1179, 1848, 2611, 3162 |
| MscI | TGGCCA | 1 cut(s) | 113 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1573, 1950, 2959 |
| Msp20I | TGGCCA | 1 cut(s) | 113 |
| MspA1I | CMGCKG | 2 cut(s) | 2021, 3332 |
| MspI | CCGG | 1 cut(s) | 225 |
| MspR9I | CCNGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| MunI | CAATTG | 2 cut(s) | 2307, 3396 |
| Mva1269I | GAATGC | 2 cut(s) | 1738, 2167 |
| MvaI | CCWGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| MvnI | CGCG | 3 cut(s) | 431, 1475, 2496 |
| NcoI | CCATGG | 2 cut(s) | 108, 2091 |
| NdeI | CATATG | 1 cut(s) | 2620 |
| NdeII | GATC | 8 cut(s) | 240, 686, 1223, 1342, 1348, 2028, 2500, 3028 |
| NheI | GCTAGC | 1 cut(s) | 2624 |
| NlaIV | GGNNCC | 5 cut(s) | 2298, 2502, 2837, 3123, 3151 |
| NmuCI | GTSAC | 4 cut(s) | 1163, 2659, 2740, 3310 |
| NsiI | ATGCAT | 1 cut(s) | 3451 |
| NspI | RCATGY | 3 cut(s) | 1171, 2289, 2958 |
| NspV | TTCGAA | 1 cut(s) | 2203 |
| PaeR7I | CTCGAG | 1 cut(s) | 3440 |
| PagI | TCATGA | 2 cut(s) | 1444, 2458 |
| PauI | GCGCGC | 1 cut(s) | 1473 |
| PceI | AGGCCT | 2 cut(s) | 1460, 2817 |
| PciI | ACATGT | 1 cut(s) | 1167 |
| PciSI | GCTCTTC | 2 cut(s) | 1638, 2368 |
| PctI | GAATGC | 2 cut(s) | 1738, 2167 |
| PdmI | GAANNNNTTC | 5 cut(s) | 199, 1179, 1848, 2611, 3162 |
| PfeI | GAWTC | 5 cut(s) | 605, 1769, 1888, 2243, 2841 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3335 |
| PleI | GAGTC | 6 cut(s) | 1132, 1276, 1619, 2353, 2463, 3003 |
| PpsI | GAGTC | 6 cut(s) | 1132, 1276, 1619, 2353, 2463, 3003 |
| Ppu21I | YACGTR | 1 cut(s) | 1412 |
| PpuMI | RGGWCCY | 1 cut(s) | 3179 |
| PscI | ACATGT | 1 cut(s) | 1167 |
| PshBI | ATTAAT | 1 cut(s) | 1836 |
| Psp5II | RGGWCCY | 1 cut(s) | 3179 |
| Psp6I | CCWGG | 5 cut(s) | 1277, 1430, 1588, 2386, 3145 |
| PspFI | CCCAGC | 2 cut(s) | 954, 1747 |
| PspGI | CCWGG | 5 cut(s) | 1277, 1430, 1588, 2386, 3145 |
| PspN4I | GGNNCC | 5 cut(s) | 2298, 2502, 2837, 3123, 3151 |
| PspPI | GGNCC | 8 cut(s) | 24, 266, 362, 1510, 2173, 2835, 3095, 3179 |
| PspPPI | RGGWCCY | 1 cut(s) | 3179 |
| PspXI | VCTCGAGB | 1 cut(s) | 3440 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2457, 2489 |
| PstI | CTGCAG | 1 cut(s) | 1696 |
| PstNI | CAGNNNCTG | 4 cut(s) | 809, 1226, 1346, 2132 |
| PsuI | RGATCY | 4 cut(s) | 686, 1223, 1342, 2500 |
| PteI | GCGCGC | 1 cut(s) | 1473 |
| RsaI | GTAC | 5 cut(s) | 1230, 2258, 2475, 2863, 3198 |
| RsaNI | GTAC | 5 cut(s) | 1229, 2257, 2474, 2862, 3197 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1573, 1950, 2959 |
| SalI | GTCGAC | 1 cut(s) | 3489 |
| SapI | GCTCTTC | 2 cut(s) | 1638, 2368 |
| Sau3AI | GATC | 8 cut(s) | 240, 686, 1223, 1342, 1348, 2028, 2500, 3028 |
| Sau96I | GGNCC | 8 cut(s) | 24, 266, 362, 1510, 2173, 2835, 3095, 3179 |
| SchI | GAGTC | 6 cut(s) | 1133, 1276, 1620, 2354, 2464, 3004 |
| ScrFI | CCNGG | 5 cut(s) | 1279, 1432, 1590, 2388, 3147 |
| SduI | GDGCHC | 3 cut(s) | 1537, 2372, 2538 |
| SexAI | ACCWGGT | 1 cut(s) | 1588 |
| SfaNI | GCATC | 9 cut(s) | 108, 621, 1346, 1377, 1393, 1918, 2132, 3179, 3436 |
| SfcI | CTRYAG | 2 cut(s) | 1425, 1692 |
| Sfr274I | CTCGAG | 1 cut(s) | 3440 |
| SfuI | TTCGAA | 1 cut(s) | 2203 |
| SinI | GGWCC | 5 cut(s) | 24, 1510, 2835, 3095, 3179 |
| SlaI | CTCGAG | 1 cut(s) | 3440 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1573, 1950, 2959 |
| SmlI | CTYRAG | 6 cut(s) | 459, 2166, 2371, 2421, 2528, 3440 |
| SmoI | CTYRAG | 6 cut(s) | 459, 2166, 2371, 2421, 2528, 3440 |
| SseBI | AGGCCT | 2 cut(s) | 1460, 2817 |
| SspI | AATATT | 1 cut(s) | 1682 |
| SspMI | CTAG | 5 cut(s) | 609, 1185, 1215, 2625, 3134 |
| StuI | AGGCCT | 2 cut(s) | 1460, 2817 |
| StyD4I | CCNGG | 5 cut(s) | 1277, 1430, 1588, 2386, 3145 |
| StyI | CCWWGG | 4 cut(s) | 108, 723, 2091, 3315 |
| TaiI | ACGT | 4 cut(s) | 313, 1234, 1414, 3246 |
| TaqI | TCGA | 6 cut(s) | 2203, 2235, 2325, 3269, 3441, 3490 |
| TatI | WGTACW | 3 cut(s) | 2256, 2473, 3196 |
| TauI | GCSGC | 3 cut(s) | 105, 791, 1087 |
| TfiI | GAWTC | 5 cut(s) | 605, 1769, 1888, 2243, 2841 |
| TseFI | GTSAC | 4 cut(s) | 1163, 2659, 2740, 3310 |
| Tsp45I | GTSAC | 4 cut(s) | 1163, 2659, 2740, 3310 |
| TspGWI | ACGGA | 3 cut(s) | 37, 83, 3201 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3335 |
| VpaK11BI | GGWCC | 5 cut(s) | 24, 1510, 2835, 3095, 3179 |
| VspI | ATTAAT | 1 cut(s) | 1836 |
| XceI | RCATGY | 3 cut(s) | 1171, 2289, 2958 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 260, 1275, 3332 |
| XhoI | CTCGAG | 1 cut(s) | 3440 |
| XmiI | GTMKAC | 2 cut(s) | 189, 3490 |
| XmnI | GAANNNNTTC | 5 cut(s) | 199, 1179, 1848, 2611, 3162 |
| XspI | CTAG | 5 cut(s) | 609, 1185, 1215, 2625, 3134 |
| Zsp2I | ATGCAT | 1 cut(s) | 3451 |