DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31210 AT4G31210 AT4G31210 |
| fragaria_vesca | FvH4_2g36580 FvH4_2g36580 FvH4_2g36580 FvH4_2g36580 FvH4_2g36580 |
| malus_domestica | MD08G1125900.v1.1 MD15G1105700.v1.1 |
| prunus_persica | Prupe.1G457500_v2.0.a1 Prupe.1G457500_v2.0.a1 Prupe.1G457500_v2.0.a1 Prupe.1G457500_v2.0.a1 |
| pyrus_communis | pycom08g10500 pycom15g09590 |
| rosa_chinensis | RchiOBHm_Chr6g0305241 |
| rosa_laevigata | RLG00000010838 RLG00000010906 |
| rosa_roxburghii | Rroxscaffold_7G00163020 |
| rosa_rugosa | Rorug06G0338800 Rorug06G0338900 |
| rosa_samantha | Rh6AG450500 Rh6BG450900 Rh6CG464400 Rh6DG451100 |
| rosa_wichuraiana | Rw6G039260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 845 |
| AccB1I | GGYRCC | 1 cut(s) | 845 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3323 |
| AccBSI | CCGCTC | 1 cut(s) | 90 |
| AccI | GTMKAC | 2 cut(s) | 174, 3478 |
| AccIII | TCCGGA | 3 cut(s) | 209, 1205, 1330 |
| AclWI | GGATC | 6 cut(s) | 679, 1216, 1322, 1341, 2480, 2493 |
| AcoI | YGGCCR | 2 cut(s) | 96, 231 |
| AcuI | CTGAAG | 4 cut(s) | 1085, 1889, 2255, 2639 |
| AdeI | CACNNNGTG | 1 cut(s) | 1517 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 94, 1085, 1175, 1416, 1588, 2398, 3244, 3323 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3332 |
| AjnI | CCWGG | 5 cut(s) | 708, 1262, 1415, 1573, 2371 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 422, 454, 624, 656 |
| Alw21I | GWGCWC | 5 cut(s) | 1522, 2122, 2523, 2615, 3383 |
| Alw26I | GTCTC | 5 cut(s) | 86, 718, 2750, 2779, 2895 |
| Alw44I | GTGCAC | 2 cut(s) | 1518, 2118 |
| AlwI | GGATC | 6 cut(s) | 679, 1216, 1322, 1341, 2480, 2493 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 794 |
| Aor13HI | TCCGGA | 3 cut(s) | 209, 1205, 1330 |
| AoxI | GGCC | 7 cut(s) | 96, 231, 251, 1217, 1443, 1743, 2800 |
| ApaLI | GTGCAC | 2 cut(s) | 1518, 2118 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2894, 2926 |
| AseI | ATTAAT | 2 cut(s) | 983, 1821 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 184, 1164, 1833, 2596, 3150 |
| Asp718I | GGTACC | 1 cut(s) | 845 |
| AspLEI | GCGC | 6 cut(s) | 299, 1294, 1462, 2073, 2161, 3277 |
| AspS9I | GGNCC | 6 cut(s) | 251, 1203, 1495, 1744, 2820, 3167 |
| AsuC2I | CCSGG | 2 cut(s) | 2393, 2722 |
| AsuHPI | GGTGA | 5 cut(s) | 1160, 1542, 3068, 3206, 3415 |
| AsuII | TTCGAA | 2 cut(s) | 242, 2188 |
| AvaII | GGWCC | 4 cut(s) | 1203, 1495, 2820, 3167 |
| BaeGI | GKGCMC | 2 cut(s) | 1522, 2122 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 696, 729 |
| BalI | TGGCCA | 1 cut(s) | 98 |
| BamHI | GGATCC | 1 cut(s) | 2485 |
| BanI | GGYRCC | 1 cut(s) | 845 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1058, 1090, 2442, 2474 |
| BbsI | GAAGAC | 4 cut(s) | 2380, 2599, 3204, 3212 |
| Bbv12I | GWGCWC | 5 cut(s) | 1522, 2122, 2523, 2615, 3383 |
| BceAI | ACGGC | 6 cut(s) | 38, 246, 1232, 1529, 1870, 2643 |
| BciT130I | CCWGG | 5 cut(s) | 710, 1264, 1417, 1575, 2373 |
| BclI | TGATCA | 3 cut(s) | 225, 2013, 3013 |
| BcnI | CCSGG | 2 cut(s) | 2393, 2722 |
| BcoDI | GTCTC | 5 cut(s) | 86, 718, 2750, 2779, 2895 |
| BfaI | CTAG | 5 cut(s) | 594, 1170, 1200, 3122, 3219 |
| BfmI | CTRYAG | 2 cut(s) | 104, 756 |
| BmcAI | AGTACT | 1 cut(s) | 2854 |
| Bme1390I | CCNGG | 7 cut(s) | 710, 1264, 1417, 1575, 2373, 2393, 2722 |
| Bme18I | GGWCC | 4 cut(s) | 1203, 1495, 2820, 3167 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3332 |
| BmgT120I | GGNCC | 6 cut(s) | 251, 1203, 1495, 1744, 2820, 3167 |
| BmiI | GGNNCC | 5 cut(s) | 847, 2283, 2487, 2822, 3111 |
| BmrFI | CCNGG | 7 cut(s) | 710, 1264, 1417, 1575, 2373, 2393, 2722 |
| BmrI | ACTGGG | 1 cut(s) | 1095 |
| BmsI | GCATC | 7 cut(s) | 1331, 1362, 1378, 1903, 2117, 3167, 3242 |
| BmuI | ACTGGG | 1 cut(s) | 1095 |
| BpiI | GAAGAC | 4 cut(s) | 2380, 2599, 3204, 3212 |
| BpmI | CTGGAG | 3 cut(s) | 438, 768, 3299 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3399 |
| Bpu14I | TTCGAA | 2 cut(s) | 242, 2188 |
| BpuEI | CTTGAG | 5 cut(s) | 429, 2341, 2391, 2498, 3413 |
| BpuMI | CCSGG | 2 cut(s) | 2393, 2722 |
| BsaAI | YACGTR | 1 cut(s) | 1397 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1332, 2197 |
| BsaI | GGTCTC | 1 cut(s) | 718 |
| BsaJI | CCNNGG | 8 cut(s) | 93, 708, 906, 1416, 2076, 2209, 2371, 2721 |
| BsaWI | WCCGGW | 3 cut(s) | 209, 1205, 1330 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 462, 492, 2518, 2548 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 94, 1085, 1175, 1416, 1588, 2398, 3244, 3323 |
| Bse1I | ACTGG | 5 cut(s) | 1090, 1617, 2511, 2850, 3332 |
| Bse3DI | GCAATG | 3 cut(s) | 2010, 2201, 3036 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1332, 2197 |
| BseAI | TCCGGA | 3 cut(s) | 209, 1205, 1330 |
| BseBI | CCWGG | 5 cut(s) | 710, 1264, 1417, 1575, 2373 |
| BseDI | CCNNGG | 8 cut(s) | 93, 708, 906, 1416, 2076, 2209, 2371, 2721 |
| BseJI | GATNNNNATC | 2 cut(s) | 1332, 2197 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 94, 1085, 1175, 1416, 1588, 2398, 3244, 3323 |
| BseMI | GCAATG | 3 cut(s) | 2010, 2201, 3036 |
| BseMII | CTCAG | 5 cut(s) | 203, 1431, 2541, 2719, 2751 |
| BseNI | ACTGG | 5 cut(s) | 1090, 1617, 2511, 2850, 3332 |
| BseRI | GAGGAG | 3 cut(s) | 1260, 2526, 2591 |
| BseSI | GKGCMC | 2 cut(s) | 1522, 2122 |
| BseYI | CCCAGC | 2 cut(s) | 939, 1732 |
| BsgI | GTGCAG | 2 cut(s) | 1593, 1959 |
| BshFI | GGCC | 7 cut(s) | 98, 233, 253, 1219, 1445, 1745, 2802 |
| BshNI | GGYRCC | 1 cut(s) | 845 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1522, 2122, 2523, 2615, 3383 |
| BsiSI | CCGG | 5 cut(s) | 210, 1206, 1331, 2392, 2721 |
| BslFI | GGGAC | 2 cut(s) | 1202, 2408 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 94, 1085, 1175, 1416, 1588, 2398, 3244, 3323 |
| BsmAI | GTCTC | 5 cut(s) | 86, 718, 2750, 2779, 2895 |
| BsmFI | GGGAC | 2 cut(s) | 1202, 2408 |
| BsmI | GAATGC | 1 cut(s) | 299 |
| BsnI | GGCC | 7 cut(s) | 98, 233, 253, 1219, 1445, 1745, 2802 |
| Bso31I | GGTCTC | 1 cut(s) | 718 |
| Bsp119I | TTCGAA | 2 cut(s) | 242, 2188 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1522, 2122, 2523, 2615, 3383 |
| Bsp13I | TCCGGA | 3 cut(s) | 209, 1205, 1330 |
| Bsp1407I | TGTACA | 2 cut(s) | 2241, 3184 |
| Bsp143I | GATC | 8 cut(s) | 225, 671, 1208, 1327, 1333, 2013, 2485, 3013 |
| Bsp19I | CCATGG | 1 cut(s) | 93 |
| BspANI | GGCC | 7 cut(s) | 98, 233, 253, 1219, 1445, 1745, 2802 |
| BspCNI | CTCAG | 5 cut(s) | 202, 1432, 2542, 2718, 2752 |
| BspEI | TCCGGA | 3 cut(s) | 209, 1205, 1330 |
| BspHI | TCATGA | 2 cut(s) | 1429, 2443 |
| BspLI | GGNNCC | 5 cut(s) | 847, 2283, 2487, 2822, 3111 |
| BspMAI | CTGCAG | 1 cut(s) | 108 |
| BspPI | GGATC | 6 cut(s) | 679, 1216, 1322, 1341, 2480, 2493 |
| BspQI | GCTCTTC | 3 cut(s) | 737, 1623, 3217 |
| BspT104I | TTCGAA | 2 cut(s) | 242, 2188 |
| BspT107I | GGYRCC | 1 cut(s) | 845 |
| BspTNI | GGTCTC | 1 cut(s) | 718 |
| BsrBI | CCGCTC | 1 cut(s) | 90 |
| BsrDI | GCAATG | 3 cut(s) | 2010, 2201, 3036 |
| BsrGI | TGTACA | 2 cut(s) | 2241, 3184 |
| BsrI | ACTGG | 5 cut(s) | 1090, 1617, 2511, 2850, 3332 |
| BssECI | CCNNGG | 8 cut(s) | 93, 708, 906, 1416, 2076, 2209, 2371, 2721 |
| BssMI | GATC | 8 cut(s) | 225, 671, 1208, 1327, 1333, 2013, 2485, 3013 |
| BssNAI | GTATAC | 1 cut(s) | 175 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 2076 |
| Bst1107I | GTATAC | 1 cut(s) | 175 |
| Bst2UI | CCWGG | 5 cut(s) | 710, 1264, 1417, 1575, 2373 |
| Bst4CI | ACNGT | 9 cut(s) | 1096, 1411, 1557, 2266, 2441, 2650, 2857, 3027, 3056 |
| Bst6I | CTCTTC | 4 cut(s) | 737, 1623, 2925, 3217 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 794, 1517, 2940 |
| BstAUI | TGTACA | 2 cut(s) | 2241, 3184 |
| BstBAI | YACGTR | 1 cut(s) | 1397 |
| BstBI | TTCGAA | 2 cut(s) | 242, 2188 |
| BstC8I | GCNNGC | 9 cut(s) | 139, 351, 1467, 1518, 1959, 2122, 2286, 2782, 2995 |
| BstDSI | CCRYGG | 3 cut(s) | 93, 906, 2209 |
| BstHHI | GCGC | 6 cut(s) | 299, 1294, 1462, 2073, 2161, 3277 |
| BstKTI | GATC | 8 cut(s) | 228, 674, 1211, 1330, 1336, 2016, 2488, 3016 |
| BstMAI | GTCTC | 5 cut(s) | 86, 718, 2750, 2779, 2895 |
| BstMBI | GATC | 8 cut(s) | 225, 671, 1208, 1327, 1333, 2013, 2485, 3013 |
| BstNI | CCWGG | 5 cut(s) | 710, 1264, 1417, 1575, 2373 |
| BstNSI | RCATGY | 2 cut(s) | 2274, 2943 |
| BstSCI | CCNGG | 7 cut(s) | 708, 1262, 1415, 1573, 2371, 2391, 2720 |
| BstSFI | CTRYAG | 2 cut(s) | 104, 756 |
| BstSLI | GKGCMC | 2 cut(s) | 1522, 2122 |
| BstV2I | GAAGAC | 4 cut(s) | 2380, 2599, 3204, 3212 |
| BstX2I | RGATCY | 4 cut(s) | 671, 1208, 1327, 2485 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1560 |
| BstYI | RGATCY | 4 cut(s) | 671, 1208, 1327, 2485 |
| BstZ17I | GTATAC | 1 cut(s) | 175 |
| BsuRI | GGCC | 7 cut(s) | 98, 233, 253, 1219, 1445, 1745, 2802 |
| BtgI | CCRYGG | 3 cut(s) | 93, 906, 2209 |
| BtgZI | GCGATG | 2 cut(s) | 20, 297 |
| BtsI | GCAGTG | 2 cut(s) | 113, 891 |
| Cac8I | GCNNGC | 9 cut(s) | 139, 351, 1467, 1518, 1959, 2122, 2286, 2782, 2995 |
| CaiI | CAGNNNCTG | 1 cut(s) | 794 |
| CciI | TCATGA | 2 cut(s) | 1429, 2443 |
| CfoI | GCGC | 6 cut(s) | 299, 1294, 1462, 2073, 2161, 3277 |
| Cfr13I | GGNCC | 6 cut(s) | 251, 1203, 1495, 1744, 2820, 3167 |
| CsiI | ACCWGGT | 1 cut(s) | 1573 |
| DpnI | GATC | 8 cut(s) | 227, 673, 1210, 1329, 1335, 2015, 2487, 3015 |
| DpnII | GATC | 8 cut(s) | 225, 671, 1208, 1327, 1333, 2013, 2485, 3013 |
| DraI | TTTAAA | 3 cut(s) | 321, 1654, 3342 |
| DraIII | CACNNNGTG | 1 cut(s) | 1517 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3332 |
| EaeI | YGGCCR | 2 cut(s) | 96, 231 |
| Eam1104I | CTCTTC | 4 cut(s) | 737, 1623, 2925, 3217 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3332 |
| EarI | CTCTTC | 4 cut(s) | 737, 1623, 2925, 3217 |
| EciI | GGCGGA | 2 cut(s) | 61, 74 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 2076 |
| Eco147I | AGGCCT | 2 cut(s) | 1445, 2802 |
| Eco31I | GGTCTC | 1 cut(s) | 718 |
| Eco32I | GATATC | 2 cut(s) | 2378, 3293 |
| Eco47I | GGWCC | 4 cut(s) | 1203, 1495, 2820, 3167 |
| Eco57I | CTGAAG | 4 cut(s) | 1085, 1889, 2255, 2639 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3167 |
| EcoRI | GAATTC | 1 cut(s) | 2146 |
| EcoRII | CCWGG | 5 cut(s) | 708, 1262, 1415, 1573, 2371 |
| EcoRV | GATATC | 2 cut(s) | 2378, 3293 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 2076 |
| EcoT22I | ATGCAT | 1 cut(s) | 3235 |
| ErhI | CCWWGG | 2 cut(s) | 93, 2076 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2790, 2822 |
| FaqI | GGGAC | 2 cut(s) | 1202, 2408 |
| FauI | CCCGC | 2 cut(s) | 1582, 2549 |
| FauNDI | CATATG | 1 cut(s) | 2605 |
| FbaI | TGATCA | 3 cut(s) | 225, 2013, 3013 |
| FblI | GTMKAC | 2 cut(s) | 174, 3478 |
| FspBI | CTAG | 5 cut(s) | 594, 1170, 1200, 3122, 3219 |
| GlaI | GCGC | 6 cut(s) | 298, 1293, 1461, 2072, 2160, 3276 |
| GsaI | CCCAGC | 2 cut(s) | 943, 1736 |
| GsuI | CTGGAG | 3 cut(s) | 438, 768, 3299 |
| HaeIII | GGCC | 7 cut(s) | 98, 233, 253, 1219, 1445, 1745, 2802 |
| HapII | CCGG | 5 cut(s) | 210, 1206, 1331, 2392, 2721 |
| HhaI | GCGC | 6 cut(s) | 299, 1294, 1462, 2073, 2161, 3277 |
| Hin6I | GCGC | 6 cut(s) | 297, 1292, 1460, 2071, 2159, 3275 |
| HinP1I | GCGC | 6 cut(s) | 297, 1292, 1460, 2071, 2159, 3275 |
| HincII | GTYRAC | 1 cut(s) | 3479 |
| HindII | GTYRAC | 1 cut(s) | 3479 |
| HindIII | AAGCTT | 3 cut(s) | 1955, 2451, 3443 |
| HinfI | GANTC | 9 cut(s) | 590, 1109, 1267, 1596, 1754, 1873, 2228, 2826, 2980 |
| HpaII | CCGG | 5 cut(s) | 210, 1206, 1331, 2392, 2721 |
| HphI | GGTGA | 5 cut(s) | 1160, 1542, 3068, 3206, 3415 |
| Hpy188III | TCNNGA | 9 cut(s) | 210, 1206, 1331, 1337, 1430, 2309, 2444, 2672, 2924 |
| HpyCH4III | ACNGT | 9 cut(s) | 1096, 1411, 1557, 2266, 2441, 2650, 2857, 3027, 3056 |
| HpyCH4IV | ACGT | 2 cut(s) | 1396, 2845 |
| HpySE526I | ACGT | 2 cut(s) | 1396, 2845 |
| HspAI | GCGC | 6 cut(s) | 297, 1292, 1460, 2071, 2159, 3275 |
| Kpn2I | TCCGGA | 3 cut(s) | 209, 1205, 1330 |
| KpnI | GGTACC | 1 cut(s) | 849 |
| Ksp22I | TGATCA | 3 cut(s) | 225, 2013, 3013 |
| Kzo9I | GATC | 8 cut(s) | 225, 671, 1208, 1327, 1333, 2013, 2485, 3013 |
| LguI | GCTCTTC | 3 cut(s) | 737, 1623, 3217 |
| LweI | GCATC | 7 cut(s) | 1331, 1362, 1378, 1903, 2117, 3167, 3242 |
| MabI | ACCWGGT | 1 cut(s) | 1573 |
| MaeI | CTAG | 5 cut(s) | 594, 1170, 1200, 3122, 3219 |
| MaeII | ACGT | 2 cut(s) | 1396, 2845 |
| MaeIII | GTNAC | 5 cut(s) | 801, 817, 2644, 2725, 3298 |
| MalI | GATC | 8 cut(s) | 227, 673, 1210, 1329, 1335, 2015, 2487, 3015 |
| MbiI | CCGCTC | 1 cut(s) | 90 |
| MboI | GATC | 8 cut(s) | 225, 671, 1208, 1327, 1333, 2013, 2485, 3013 |
| MfeI | CAATTG | 2 cut(s) | 2292, 3384 |
| MflI | RGATCY | 4 cut(s) | 671, 1208, 1327, 2485 |
| MhlI | GDGCHC | 5 cut(s) | 1522, 2122, 2523, 2615, 3383 |
| MlsI | TGGCCA | 1 cut(s) | 98 |
| MluNI | TGGCCA | 1 cut(s) | 98 |
| MlyI | GAGTC | 4 cut(s) | 1118, 1261, 1605, 2989 |
| MmeI | TCCRAC | 1 cut(s) | 622 |
| Mox20I | TGGCCA | 1 cut(s) | 98 |
| Mph1103I | ATGCAT | 1 cut(s) | 3235 |
| MroI | TCCGGA | 3 cut(s) | 209, 1205, 1330 |
| MroXI | GAANNNNTTC | 5 cut(s) | 184, 1164, 1833, 2596, 3150 |
| MscI | TGGCCA | 1 cut(s) | 98 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1558, 1935 |
| Msp20I | TGGCCA | 1 cut(s) | 98 |
| MspA1I | CMGCKG | 3 cut(s) | 869, 1072, 3320 |
| MspI | CCGG | 5 cut(s) | 210, 1206, 1331, 2392, 2721 |
| MspR9I | CCNGG | 7 cut(s) | 710, 1264, 1417, 1575, 2373, 2393, 2722 |
| MunI | CAATTG | 2 cut(s) | 2292, 3384 |
| Mva1269I | GAATGC | 1 cut(s) | 299 |
| MvaI | CCWGG | 5 cut(s) | 710, 1264, 1417, 1575, 2373 |
| NciI | CCSGG | 2 cut(s) | 2393, 2722 |
| NcoI | CCATGG | 1 cut(s) | 93 |
| NdeI | CATATG | 1 cut(s) | 2605 |
| NdeII | GATC | 8 cut(s) | 225, 671, 1208, 1327, 1333, 2013, 2485, 3013 |
| NlaIV | GGNNCC | 5 cut(s) | 847, 2283, 2487, 2822, 3111 |
| NmuCI | GTSAC | 4 cut(s) | 801, 2644, 2725, 3298 |
| NsiI | ATGCAT | 1 cut(s) | 3235 |
| NspI | RCATGY | 2 cut(s) | 2274, 2943 |
| NspV | TTCGAA | 2 cut(s) | 242, 2188 |
| PagI | TCATGA | 2 cut(s) | 1429, 2443 |
| PceI | AGGCCT | 2 cut(s) | 1445, 2802 |
| PciSI | GCTCTTC | 3 cut(s) | 737, 1623, 3217 |
| PctI | GAATGC | 1 cut(s) | 299 |
| PdmI | GAANNNNTTC | 5 cut(s) | 184, 1164, 1833, 2596, 3150 |
| PfeI | GAWTC | 5 cut(s) | 590, 1754, 1873, 2228, 2826 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3323 |
| PfoI | TCCNGGA | 1 cut(s) | 2391 |
| PleI | GAGTC | 4 cut(s) | 1117, 1261, 1604, 2988 |
| PpsI | GAGTC | 4 cut(s) | 1117, 1261, 1604, 2988 |
| Ppu21I | YACGTR | 1 cut(s) | 1397 |
| PpuMI | RGGWCCY | 1 cut(s) | 3167 |
| PshBI | ATTAAT | 2 cut(s) | 983, 1821 |
| Psp5II | RGGWCCY | 1 cut(s) | 3167 |
| Psp6I | CCWGG | 5 cut(s) | 708, 1262, 1415, 1573, 2371 |
| PspFI | CCCAGC | 2 cut(s) | 939, 1732 |
| PspGI | CCWGG | 5 cut(s) | 708, 1262, 1415, 1573, 2371 |
| PspN4I | GGNNCC | 5 cut(s) | 847, 2283, 2487, 2822, 3111 |
| PspPI | GGNCC | 6 cut(s) | 251, 1203, 1495, 1744, 2820, 3167 |
| PspPPI | RGGWCCY | 1 cut(s) | 3167 |
| PstI | CTGCAG | 1 cut(s) | 108 |
| PstNI | CAGNNNCTG | 1 cut(s) | 794 |
| PsuI | RGATCY | 4 cut(s) | 671, 1208, 1327, 2485 |
| PvuII | CAGCTG | 2 cut(s) | 1072, 3320 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1558, 1935 |
| SalI | GTCGAC | 1 cut(s) | 3477 |
| SapI | GCTCTTC | 3 cut(s) | 737, 1623, 3217 |
| Sau3AI | GATC | 8 cut(s) | 225, 671, 1208, 1327, 1333, 2013, 2485, 3013 |
| Sau96I | GGNCC | 6 cut(s) | 251, 1203, 1495, 1744, 2820, 3167 |
| ScaI | AGTACT | 1 cut(s) | 2854 |
| SchI | GAGTC | 4 cut(s) | 1118, 1261, 1605, 2989 |
| ScrFI | CCNGG | 7 cut(s) | 710, 1264, 1417, 1575, 2373, 2393, 2722 |
| SduI | GDGCHC | 5 cut(s) | 1522, 2122, 2523, 2615, 3383 |
| SexAI | ACCWGGT | 1 cut(s) | 1573 |
| SfaNI | GCATC | 7 cut(s) | 1331, 1362, 1378, 1903, 2117, 3167, 3242 |
| SfcI | CTRYAG | 2 cut(s) | 104, 756 |
| SfuI | TTCGAA | 2 cut(s) | 242, 2188 |
| SinI | GGWCC | 4 cut(s) | 1203, 1495, 2820, 3167 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1558, 1935 |
| SmlI | CTYRAG | 5 cut(s) | 444, 2356, 2406, 2513, 3428 |
| SmoI | CTYRAG | 5 cut(s) | 444, 2356, 2406, 2513, 3428 |
| SseBI | AGGCCT | 2 cut(s) | 1445, 2802 |
| SspI | AATATT | 1 cut(s) | 1667 |
| SspMI | CTAG | 5 cut(s) | 594, 1170, 1200, 3122, 3219 |
| StuI | AGGCCT | 2 cut(s) | 1445, 2802 |
| StyD4I | CCNGG | 7 cut(s) | 708, 1262, 1415, 1573, 2371, 2391, 2720 |
| StyI | CCWWGG | 2 cut(s) | 93, 2076 |
| TaaI | ACNGT | 9 cut(s) | 1096, 1411, 1557, 2266, 2441, 2650, 2857, 3027, 3056 |
| TaiI | ACGT | 2 cut(s) | 1399, 2848 |
| TaqI | TCGA | 5 cut(s) | 242, 740, 2026, 2188, 3478 |
| TatI | WGTACW | 5 cut(s) | 2038, 2241, 2458, 2852, 3184 |
| TauI | GCSGC | 2 cut(s) | 90, 1262 |
| TfiI | GAWTC | 5 cut(s) | 590, 1754, 1873, 2228, 2826 |
| TseFI | GTSAC | 4 cut(s) | 801, 2644, 2725, 3298 |
| Tsp45I | GTSAC | 4 cut(s) | 801, 2644, 2725, 3298 |
| TspGWI | ACGGA | 2 cut(s) | 2198, 3189 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3323 |
| VneI | GTGCAC | 2 cut(s) | 1518, 2118 |
| VpaK11BI | GGWCC | 4 cut(s) | 1203, 1495, 2820, 3167 |
| VspI | ATTAAT | 2 cut(s) | 983, 1821 |
| XceI | RCATGY | 2 cut(s) | 2274, 2943 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1260, 1665 |
| XmiI | GTMKAC | 2 cut(s) | 174, 3478 |
| XmnI | GAANNNNTTC | 5 cut(s) | 184, 1164, 1833, 2596, 3150 |
| XspI | CTAG | 5 cut(s) | 594, 1170, 1200, 3122, 3219 |
| ZrmI | AGTACT | 1 cut(s) | 2854 |
| Zsp2I | ATGCAT | 1 cut(s) | 3235 |