Rorug06G0338800

DNA topoisomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006256
Physical Location & Seq
Reverse (-)
49054360 .. 49054697
338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0338800.1

Sequence Viewer

Length: 255 bp
ATGTGGGAAGTGCTCACAGGTAGAAGAGATGGAACAATCTCAACAATTTGGGAGGCCTTGCTTTACCTTCCGGCGTCTGGCTTTAACTTCACCAAACTCAAACACAACTTTGCCAGCAAGAATCTTACTGTGCATGACCACCTTGTGGTTTTATCAGGTTCACACACAATTGGAGTAGGCCACTGTAGTAGTTTTAGCAACAGGCTCTACAACTTCACTGGAAAAGGTGATTGTGACCTATCTCTGAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Topoisom_bac Toprim Toprim_C_rpt zf-C4_Topoisom

Protein Analysis

84

Amino Acids

9.33

Weight (kDa)

6.96

Isoelectric Point (pI)

14.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 78 4.6e-19 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 74
AdeI CACNNNGTG 1 cut(s) 145
AfiI CCNNNNNNNGG 2 cut(s) 77, 145
Alw21I GWGCWC 1 cut(s) 15
AoxI GGCC 2 cut(s) 54, 178
AsuHPI GGTGA 2 cut(s) 82, 239
Bbv12I GWGCWC 1 cut(s) 15
BccI CCATC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 145
Bse1I ACTGG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 77, 145
BseNI ACTGG 1 cut(s) 223
BshFI GGCC 2 cut(s) 56, 180
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 77, 145
BsnI GGCC 2 cut(s) 56, 180
Bsp1286I GDGCHC 1 cut(s) 15
BspANI GGCC 2 cut(s) 56, 180
BsrI ACTGG 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 130, 185
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 184
BsuRI GGCC 2 cut(s) 56, 180
BtsIMutI CAGTG 2 cut(s) 181, 216
Cac8I GCNNGC 1 cut(s) 115
CseI GACGC 1 cut(s) 63
CviAII CATG 1 cut(s) 134
CviJI RGCY 4 cut(s) 56, 81, 180, 205
CviKI_1 RGCY 4 cut(s) 56, 81, 180, 205
DraIII CACNNNGTG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco147I AGGCCT 1 cut(s) 56
FaeI CATG 1 cut(s) 137
FaiI YATR 1 cut(s) 135
FatI CATG 1 cut(s) 133
HaeIII GGCC 2 cut(s) 56, 180
HapII CCGG 1 cut(s) 71
HgaI GACGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 1 cut(s) 137
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 82, 239
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 130, 185
HpyCH4V TGCA 1 cut(s) 133
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 137
LpnPI CCDG 7 cut(s) 3, 63, 84, 127, 141, 187, 204
MaeIII GTNAC 1 cut(s) 233
MboII GAAGA 1 cut(s) 36
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 2 cut(s) 45, 168
MnlI CCTC 1 cut(s) 46
MseI TTAA 1 cut(s) 84
MspI CCGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 168
NlaIII CATG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 233
PceI AGGCCT 1 cut(s) 56
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 145
SaqAI TTAA 1 cut(s) 84
SduI GDGCHC 1 cut(s) 15
SetI ASST 6 cut(s) 22, 69, 144, 160, 229, 240
SfcI CTRYAG 1 cut(s) 184
Sse9I AATT 2 cut(s) 45, 168
SseBI AGGCCT 1 cut(s) 56
StuI AGGCCT 1 cut(s) 56
TaaI ACNGT 2 cut(s) 130, 185
TasI AATT 2 cut(s) 45, 168
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 188, 223
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspRI CASTG 2 cut(s) 188, 223
Van91I CCANNNNNTGG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.