Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001871

Physical Location & Seq

Genomic Coordinates Reverse (-)

9286370 .. 9289395

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCGTGATGGGCGTATTGCATATGTGGACTTTGGGAATGTTGCTGTGCTTAGTCAGCAAAATAAACAAATTTTAATTGATGCTGTTGTCCATGCTGTAAACGAGGACTATGTTGAGATGGCAAATGATTTCACCAGACTTGGCTTCTTGGCTCCTGGGACTGATGTCTCTCCTATTGTTCCAGCTTTAGAATCAATATGGCAGAACTCTGTTGGAAAAGGACTGTCTGACTTTAATTTTCGAAGCGTTACAGGGAAGTTTAACCAATTAGTCTACAACTATCCCATCCGTATCCCAGAGAGGTTTTCCCTTGTCATCCGTTCTTTGTTGACTCAAGAGGGCATCTGTTTTACTTTGCAGCCAGACTTCAAATTTCTTGAGGTTGCCTATCCATATGTGGCAAAGCGCCTACTGACAGATCCAAACCCAGCTCTACGTGAACGCCTCATACAGGTATTATTTAAAGATGGTGTTTTCCAATGGAAGCGGCTAGAAAACCTTATTGTTCTTGCCAAAGAAAATGTGACCAAGATGAGCAGCAATCCTGCATTTCAAGCTGTAGACACGCAAGGGTCAAGAAAATTGCAATTTAGTAGGAAACTGGACCTCACTGACACCATCAAAGATGGAGCTCGCCTTTTCATTTTTGATGAAGGAATTCGTAGAAAGCTTATTCTTGCTTTGACGGAAGATTCAAAGCTTCACATTGAAGAGCTTGTGGATGTGTATAGACTCGTTGAACGATCAGATAGACATACCGTCAGTTGCAGTGGAAGTAGCACGAGATTTCCCAACCGTTGTACGAGATCTGATGCTTTCCTGGAGCGAGTCGGTGTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006464 GO:0006468 GO:0006725 GO:0006778 GO:0006787 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006995 GO:0006996 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009635 GO:0009636 GO:0009637 GO:0009639 GO:0009657 GO:0009658 GO:0009668 GO:0009767 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009987 GO:0009991 GO:0010027 GO:0010033 GO:0010035 GO:0010109 GO:0010114 GO:0010287 GO:0010380 GO:0015979 GO:0015994 GO:0015996 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019216 GO:0019222 GO:0019439 GO:0019538 GO:0019684 GO:0019747 GO:0022900 GO:0031279 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031537 GO:0031540 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033015 GO:0033554 GO:0034641 GO:0036211 GO:0042221 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046149 GO:0046483 GO:0046700 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051186 GO:0051187 GO:0051193 GO:0051194 GO:0051716 GO:0055114 GO:0061024 GO:0065007 GO:0065009 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0080177 GO:0080183 GO:0090056 GO:0140096 GO:1901360 GO:1901361 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902171 GO:1902326 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

281

Amino Acids

31.91

Weight (kDa)

8.7

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31390 AT4G31390 AT4G31390
fragaria_vesca	FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931
malus_domestica	MD08G1131400.v1.1 MD15G1109000.v1.1 MD15G1109100.v1.1
prunus_persica	Prupe.1G461300_v2.0.a1 Prupe.1G461300_v2.0.a1 Prupe.1G461300_v2.0.a1
pyrus_communis	pycom08g11010 pycom15g09950
rosa_chinensis	RchiOBHm_Chr6g0304841 RchiOBHm_Chr6g0304851
rosa_laevigata	RLG00000010945
rosa_multiflora	Rmu_sc0010715.1_g000003 Rmu_sc0010715.1_g000004 Rmu_sc0030552.1_g000002 Rmu_sc0030552.1_g000003 Rmu_ssc0000278.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163410 Rroxscaffold_7G00163420
rosa_rugosa	Rorug06G0335300 Rorug06G0335300 Rorug06G0335300 Rorug06G0335400 Rorug06G0335500 Rorug06G0335600 Rorug06G0335600
rosa_samantha	Rh6AG446900 Rh6BG454700 Rh6CG460400 Rh6DG447400
rosa_wichuraiana	Rw6G038890 Rw6G038900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	273, 561
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	69, 371, 657
AfaI	GTAC	1 cut(s)	802
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	5 cut(s)	370, 554, 696, 710, 740
AhdI	GACNNNNNGTC	1 cut(s)	758
AjnI	CCWGG	2 cut(s)	154, 819
AluBI	AGCT	7 cut(s)	185, 431, 557, 632, 670, 700, 715
AluI	AGCT	7 cut(s)	185, 431, 557, 632, 670, 700, 715
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	358, 537
ApoI	RAATTY	3 cut(s)	69, 371, 657
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	1 cut(s)	124
AsuII	TTCGAA	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	634
BauI	CACGAG	1 cut(s)	781
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	370, 549
BccI	CCATC	6 cut(s)	2, 112, 293, 461, 620, 626
BciT130I	CCWGG	2 cut(s)	156, 821
BciVI	GTATCC	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	806
BisI	GCNGC	3 cut(s)	359, 488, 538
BlsI	GCNGC	3 cut(s)	360, 489, 539
Bme1390I	CCNGG	2 cut(s)	156, 821
Bme18I	GGWCC	1 cut(s)	604
BmeRI	GACNNNNNGTC	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	156, 821
BmsI	GCATC	3 cut(s)	70, 351, 802
BoxI	GACNNNNGTC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	842
Bpu14I	TTCGAA	1 cut(s)	241
BpuEI	CTTGAG	2 cut(s)	318, 398
BsaAI	YACGTR	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	156, 821
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	3 cut(s)	285, 315, 727
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	606
BseXI	GCAGC	2 cut(s)	370, 549
BseYI	CCCAGC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	3 cut(s)	418, 743, 806
BspACI	CCGC	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	705
BspT104I	TTCGAA	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	3 cut(s)	418, 743, 806
BssSI	CACGAG	1 cut(s)	781
Bst2BI	CACGAG	1 cut(s)	781
Bst2UI	CCWGG	2 cut(s)	156, 821
Bst4CI	ACNGT	3 cut(s)	225, 760, 797
Bst6I	CTCTTC	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	437
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	285, 315, 727
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	3 cut(s)	421, 746, 809
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	3 cut(s)	418, 743, 806
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 55, 554
BstNI	CCWGG	2 cut(s)	156, 821
BstPAI	GACNNNNGTC	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	154, 819
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	370, 549
BstX2I	RGATCY	2 cut(s)	418, 806
BstYI	RGATCY	2 cut(s)	418, 806
BsuI	GTATCC	1 cut(s)	302
BtsCI	GGATG	3 cut(s)	285, 315, 727
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	2 cut(s)	609, 775
Cac8I	GCNNGC	1 cut(s)	634
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	604
Csp6I	GTAC	1 cut(s)	801
CviAII	CATG	1 cut(s)	92
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	420, 745, 808
DpnII	GATC	3 cut(s)	418, 743, 806
DraI	TTTAAA	1 cut(s)	463
DriI	GACNNNNNGTC	1 cut(s)	758
Eam1104I	CTCTTC	1 cut(s)	705
Eam1105I	GACNNNNNGTC	1 cut(s)	758
EarI	CTCTTC	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	632
Eco24I	GRGCYC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	604
Eco53kI	GAGCTC	1 cut(s)	632
EcoICRI	GAGCTC	1 cut(s)	632
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	154, 819
EcoT38I	GRGCYC	1 cut(s)	634
FaeI	CATG	1 cut(s)	95
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	91
FauNDI	CATATG	2 cut(s)	22, 394
FblI	GTMKAC	2 cut(s)	273, 561
Fnu4HI	GCNGC	3 cut(s)	359, 488, 538
FokI	GGATG	3 cut(s)	272, 302, 734
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	3 cut(s)	359, 488, 538
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	3 cut(s)	359, 488, 538
GsaI	CCCAGC	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	842
HaeII	RGCGCY	1 cut(s)	409
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	2 cut(s)	668, 698
HinfI	GANTC	5 cut(s)	191, 331, 692, 732, 828
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	6 cut(s)	28, 100, 274, 330, 440, 562
Hpy188I	TCNGA	4 cut(s)	229, 748, 811, 842
Hpy188III	TCNNGA	3 cut(s)	335, 377, 576
Hpy8I	GTNNAC	6 cut(s)	28, 100, 274, 330, 440, 562
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	3 cut(s)	225, 760, 797
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	20, 358, 548, 586, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 55, 554
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	418, 743, 806
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	3 cut(s)	157, 629, 823
Lsp1109I	GCAGC	2 cut(s)	370, 549
LweI	GCATC	3 cut(s)	70, 351, 802
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	247, 523
MalI	GATC	3 cut(s)	420, 745, 808
MboI	GATC	3 cut(s)	418, 743, 806
MboII	GAAGA	2 cut(s)	701, 722
MflI	RGATCY	2 cut(s)	418, 806
MhlI	GDGCHC	1 cut(s)	634
MluCI	AATT	8 cut(s)	69, 75, 235, 266, 371, 581, 587, 657
MlyI	GAGTC	3 cut(s)	325, 726, 837
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	6 cut(s)	97, 294, 331, 373, 455, 617
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	4 cut(s)	74, 234, 261, 462
MspR9I	CCNGG	2 cut(s)	156, 821
MvaI	CCWGG	2 cut(s)	156, 821
MwoI	GCNNNNNNNGC	3 cut(s)	10, 55, 554
NdeI	CATATG	2 cut(s)	22, 394
NdeII	GATC	3 cut(s)	418, 743, 806
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	523
NspV	TTCGAA	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	191, 692
PfoI	TCCNGGA	1 cut(s)	819
PkrI	GCNGC	3 cut(s)	360, 489, 539
PleI	GAGTC	3 cut(s)	325, 726, 836
PpsI	GAGTC	3 cut(s)	325, 726, 836
Ppu21I	YACGTR	1 cut(s)	437
PshAI	GACNNNNGTC	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	154, 819
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	2 cut(s)	154, 819
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	604
PsrI	GAACNNNNNNTAC	2 cut(s)	432, 464
PsuI	RGATCY	2 cut(s)	418, 806
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
SacI	GAGCTC	1 cut(s)	634
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	4 cut(s)	74, 234, 261, 462
SatI	GCNGC	3 cut(s)	359, 488, 538
Sau3AI	GATC	3 cut(s)	418, 743, 806
Sau96I	GGNCC	1 cut(s)	604
SchI	GAGTC	3 cut(s)	325, 726, 837
ScrFI	CCNGG	2 cut(s)	156, 821
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	3 cut(s)	70, 351, 802
SfcI	CTRYAG	1 cut(s)	558
SfuI	TTCGAA	1 cut(s)	241
SinI	GGWCC	1 cut(s)	604
SmlI	CTYRAG	2 cut(s)	333, 377
SmoI	CTYRAG	2 cut(s)	333, 377
Sse9I	AATT	8 cut(s)	69, 75, 235, 266, 371, 581, 587, 657
SsiI	CCGC	1 cut(s)	487
SspMI	CTAG	1 cut(s)	491
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	2 cut(s)	154, 819
TaaI	ACNGT	3 cut(s)	225, 760, 797
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	241
TasI	AATT	8 cut(s)	69, 75, 235, 266, 371, 581, 587, 657
TauI	GCSGC	1 cut(s)	490
TfiI	GAWTC	2 cut(s)	191, 692
Tru1I	TTAA	4 cut(s)	74, 234, 261, 462
Tru9I	TTAA	4 cut(s)	74, 234, 261, 462
TscAI	CASTG	2 cut(s)	616, 775
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	2 cut(s)	358, 537
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	2 cut(s)	631, 666
TspGWI	ACGGA	3 cut(s)	278, 308, 701
TspRI	CASTG	2 cut(s)	616, 775
VpaK11BI	GGWCC	1 cut(s)	604
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	3 cut(s)	69, 371, 657
XmiI	GTMKAC	2 cut(s)	273, 561
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.