Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001871

Physical Location & Seq

Genomic Coordinates Reverse (-)

48756926 .. 48758603

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAACACCTTAACTTCAACATCCCTCTGCAATTATCAAGTTTCAAGATTTCCTTCTAACATTTCAAACCAGAGAAACATATCACCCTTTAATACTTCATTTCCTACCAAAATCTGCTTCAAAGTTTATGCCAATGCCAATGCCAATGCCAATGCCAATACCAATGACTTAGAAGCAGAACCGAAACAAGAGCTAGAAGCTCAACCAAAGGAAGCAACCAAGCCTTCTACTATATCAGCTACTGCACCACTTGATAAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACATTTGCACCAAGGGCTTCAACAGCAAGCAAAAACCCGGCAGTGCCTGGTTCCGTCTTGTACACCGTTTTCGAGGTTCAAGCTTATGCCTGCATGCTCTTAGGTGGAGTTCTGTCTTACAATCTCATATTCCCATCAAATGAACCAGACCTTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTACAATTCCTTCACTGCGTGCCCGAGACTGCTCGAAAAATGAGAAGGAAGCTCTGAACTATCTCTTTCTCCTTGTTCCATTACTCAACGTGACAATCCCATTTTTCGTGAAGTCGTTTGCAGTTGTTTGGTCTGCTGATACCGTAGCCTTCTTTGCCATGTATGCATGGAAGTTGGGGTGGCTACAAAGAGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006464 GO:0006468 GO:0006725 GO:0006778 GO:0006787 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006995 GO:0006996 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009635 GO:0009636 GO:0009637 GO:0009639 GO:0009657 GO:0009658 GO:0009668 GO:0009767 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009987 GO:0009991 GO:0010027 GO:0010033 GO:0010035 GO:0010109 GO:0010114 GO:0010287 GO:0010380 GO:0015979 GO:0015994 GO:0015996 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019216 GO:0019222 GO:0019439 GO:0019538 GO:0019684 GO:0019747 GO:0022900 GO:0031279 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031537 GO:0031540 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033015 GO:0033554 GO:0034641 GO:0036211 GO:0042221 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046149 GO:0046483 GO:0046700 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051186 GO:0051187 GO:0051193 GO:0051194 GO:0051716 GO:0055114 GO:0061024 GO:0065007 GO:0065009 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0080177 GO:0080183 GO:0090056 GO:0140096 GO:1901360 GO:1901361 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902171 GO:1902326 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

225

Amino Acids

25.15

Weight (kDa)

8.84

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31390 AT4G31390 AT4G31390
fragaria_vesca	FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931
malus_domestica	MD08G1131400.v1.1 MD15G1109000.v1.1 MD15G1109100.v1.1
prunus_persica	Prupe.1G461300_v2.0.a1 Prupe.1G461300_v2.0.a1 Prupe.1G461300_v2.0.a1
pyrus_communis	pycom08g11010 pycom15g09950
rosa_chinensis	RchiOBHm_Chr6g0304841 RchiOBHm_Chr6g0304851
rosa_laevigata	RLG00000010945
rosa_multiflora	Rmu_sc0010715.1_g000003 Rmu_sc0010715.1_g000004 Rmu_sc0030552.1_g000002 Rmu_sc0030552.1_g000003 Rmu_ssc0000278.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163410 Rroxscaffold_7G00163420
rosa_rugosa	Rorug06G0335300 Rorug06G0335300 Rorug06G0335300 Rorug06G0335400 Rorug06G0335500 Rorug06G0335600 Rorug06G0335600
rosa_samantha	Rh6AG446900 Rh6BG454700 Rh6CG460400 Rh6DG447400
rosa_wichuraiana	Rw6G038890 Rw6G038900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	18, 45, 66, 121, 312, 371
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	5 cut(s)	193, 200, 239, 374, 530
AluI	AGCT	5 cut(s)	193, 200, 239, 374, 530
Alw26I	GTCTC	1 cut(s)	498
AlwNI	CAGNNNCTG	2 cut(s)	242, 338
Ama87I	CYCGRG	1 cut(s)	501
ApeKI	GCWGC	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	259, 465
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	2 cut(s)	259, 465
BaeGI	GKGCMC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	194, 676
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	329, 339
Bme18I	GGWCC	2 cut(s)	259, 465
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	259, 465
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	329, 339
BpiI	GAAGAC	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	20, 480
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	498
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	358, 622
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	351
BstC8I	GCNNGC	4 cut(s)	319, 382, 386, 498
BstDEI	CTNAG	2 cut(s)	169, 391
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	20, 480
BstMAI	GTCTC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 305, 314, 632, 641
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	327, 337
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	20, 480
BtsI	GCAGTG	2 cut(s)	339, 491
BtsIMutI	CAGTG	2 cut(s)	339, 491
Cac8I	GCNNGC	4 cut(s)	319, 382, 386, 498
CaiI	CAGNNNCTG	2 cut(s)	242, 338
Cfr13I	GGNCC	2 cut(s)	259, 465
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	3 cut(s)	385, 637, 645
CviJI	RGCY	9 cut(s)	193, 200, 223, 239, 308, 374, 530, 626, 661
CviKI_1	RGCY	9 cut(s)	193, 200, 223, 239, 308, 374, 530, 626, 661
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	169, 391
DraIII	CACNNNGTG	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	259, 465
Eco88I	CYCGRG	1 cut(s)	501
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	3 cut(s)	388, 640, 648
FaiI	YATR	9 cut(s)	80, 129, 233, 378, 386, 419, 638, 642, 646
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FatI	CATG	3 cut(s)	384, 636, 644
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	2 cut(s)	7, 487
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	194, 676
GluI	GCNGC	1 cut(s)	288
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	3 cut(s)	388, 640, 648
HindIII	AAGCTT	1 cut(s)	372
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	354, 480
Hpy188I	TCNGA	2 cut(s)	279, 534
Hpy188III	TCNNGA	2 cut(s)	45, 586
Hpy8I	GTNNAC	2 cut(s)	354, 480
HpyAV	CCTTC	5 cut(s)	63, 234, 498, 517, 637
HpyCH4III	ACNGT	2 cut(s)	358, 622
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	7 cut(s)	30, 245, 290, 299, 384, 599, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 305, 314, 632, 641
HpyF3I	CTNAG	2 cut(s)	169, 391
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	3 cut(s)	388, 640, 648
LpnPI	CCDG	6 cut(s)	83, 324, 342, 351, 394, 450
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	194, 676
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	568
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	2 cut(s)	31, 483
MnlI	CCTC	3 cut(s)	35, 272, 358
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	3 cut(s)	11, 90, 452
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	329, 339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	296, 305, 314, 632, 641
NciI	CCSGG	1 cut(s)	329
NlaIII	CATG	3 cut(s)	388, 640, 648
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	568
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	1 cut(s)	388
PaeI	GCATGC	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	259, 465
PspPPI	RGGWCCY	1 cut(s)	259
PstNI	CAGNNNCTG	2 cut(s)	242, 338
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	3 cut(s)	11, 90, 452
SatI	GCNGC	1 cut(s)	288
Sau96I	GGNCC	2 cut(s)	259, 465
ScrFI	CCNGG	2 cut(s)	329, 339
SduI	GDGCHC	1 cut(s)	502
SinI	GGWCC	2 cut(s)	259, 465
SmiMI	CAYNNNNRTG	1 cut(s)	473
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	2 cut(s)	31, 483
SspMI	CTAG	2 cut(s)	194, 676
StyD4I	CCNGG	2 cut(s)	327, 337
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	358, 622
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	2 cut(s)	363, 512
TasI	AATT	2 cut(s)	31, 483
TatI	WGTACW	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	11, 90, 452
Tru9I	TTAA	3 cut(s)	11, 90, 452
TscAI	CASTG	2 cut(s)	339, 498
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	3 cut(s)	17, 87, 447
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	2 cut(s)	339, 498
VpaK11BI	GGWCC	2 cut(s)	259, 465
VspI	ATTAAT	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	266
XceI	RCATGY	1 cut(s)	388
XspI	CTAG	2 cut(s)	194, 676
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.