Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001871

Physical Location & Seq

Genomic Coordinates Reverse (-)

5674437 .. 5680453

Gene Structure 6017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

ATGCCTCGTAAAGTGAACTATGGACTTGATTACGATGATGAAGACTACGATGCCTATGAAGATTATGATTATGACCATGACGACGATTTGGAAATAGAAAATAATGGCAAAGAACCTGAGTTAAAGCAGGAAACTGTAAGGCGTGATGTTTGGCGTTGTTCCATTTGTACATATGATAATGAAGAAGGTTTGACTGCGTGTGACATTTGTGGGGTTCTTCATAAACCTTTGGGTAGAGTTGGAAGCAATATTGATAAGAAAACAGTTGAAGGCAGATGCAAAGATTCTGGAGCATCCGTAATGGCCAAGTGTCTTTTTGCATCGTTGCCGCGCAAGATAACCCAAAAGGCTGTATTATTTCATCAGCAGAAAGATGATTTTCTGATAGAAGAGGGAAATAAGTTCTACAAGCTTGGGGATATCCAAGGACCCATTCATGAATTCCAAAACGCTTTTATTATTCATAAGAATGATGATATTAATATAGCTCCTTTCAAGTTTGATGTTCCATCCCCAGATGATGTGGTTTCCAACGGATTGCGATCCTCCAAAGTGGGTTCAAAAGCCAGTGTTAGTGATGTAGAGTCTTCGGGAGTTTCCTCGAAAGCTGCTAAGAAGAATAGTGCAGTTAGGGCACAATCAAGTGGTGAATGGTCAGATAGCTCATCTACTGCAGCACAAAAAGACCAACAAGCTAGATTAGATAAGGGAATTTCATCAGGGAATAGGGCATTTAGCCATCCCCATGGAAGTAGTGGCACCACAACTATACAATCAAATGGTAGTTTGTCGGACAGTTCATCCTTGCTGCCAACAAGCTCTCATATGGAAGAGGGCATTAGTTCTTTAGTGATTGGAGGCAAGCCTGAGAGTCTTACTACTAGCGCTAAGAACATGTCTTCCGATGCTAGATCTGGGCATTCGAAAATTGTTAGTTCTAGAGGATCGCATTCACGAGCAGACTATAAACCTGAAAAATGGATGCTTCCTGACGAAGCTGTTGATACATTAACTCAACTGAATCTTGCAATTGTTGGACACGTTGATTCAGGAAAATCAACACTCTCAGGTAGACTGCTTCACCTTTTGGGACGGGTATCTAAAAAAGACATGCACAAATATGAGAAAGAGGCAAAGTCACAGGGCAAGGGGTCGTTTGCATATGCTTGGGCATTGGATGAGAGTGCAGAAGAAAGGGAAAGAGGAATTACTATGAATGTGGCTGTTGCATATTTTGATTCCAGAAAGTTTCATGTTGTTGTGCTGGATTCTCCTGGCCATAAAGACTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCTGCAATACTTCTTGTAGATGCTTCGTGTGGTGCATTCGAAGCTGGTATAAAGGGACAGACTATGGAACATGCACAACTTATCAGAAGCTTTGGTGTTGATCAAATTATAGTTGCGGTTAACAAGATGGATGTTGTTGAATACTCCAAGGATCGATTTGATGAAATCAAACAGACACTTGGAACATTTCTCCATTCCCGTGGCTTCAAAGATTCTTCAGTGTATTGGGTCCCATTGAGTGTCATGGAAAATCAAAATTTGGTGTCAGCTCCTTCTGAGGCTCGTTTGTTGTCTTGGTATCGTGGACCTTCCCTGTTGGATTCAATTGATTCCCTTCAACCTCCCACGAGAGATTTTCAAAGGCCACTGCTCATGCCAATATGTGATGTCATTAGATCTACTTCTCTGGGACAGGTGTCTGCTTGTGGTAAATTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTTCTGGTTATGCCTTCAGGAGAATTAGGGACTGTCCGCTCTTTAGAACGGGATTCTCAGGCATGTTCCATTGCAAGAGCTGGTGACAATGTGGGTGTTACTCTTCAAGGCATTGATGGTGGTCATGTGATGGCAGGGGGCGTGCTCTGTCACCCTGCTTTTCCGGTTGCAGTTGCAAAACATTTGGAACTGAAAGTGCTTCTTTTGGATGTCGCCACCCCTATTTTAATTGGCTCTCAGGTGGAATTTCACATACACCATGCCAAGGAGGCTGCAACAGTTGTAAAAATATTGTCATTAATTGATCCAAAGGGAAAAGTGACGAAAAAGTCTCCTCGCTGTCTACTTGCAAAGCAGAGGGCTGTTATAGAGGTAGTTTTGCAAGGACCAGTTTGTGTGGAAGAGCATACAAGTTCTAAAGCTCTAGGGAGCGTATCTCTGAGGGCATTAGGAAACACTGTGGGCCTCGGTGTTGTAAGCCGGATTATAAAGGAGCCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000288 GO:0000291 GO:0000956 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019222 GO:0019439 GO:0019538 GO:0023052 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034641 GO:0034645 GO:0034655 GO:0035639 GO:0036094 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043603 GO:0043604 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 ko05134 map03015 map05134

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 GTP_EFTU_D3

Protein Analysis

764

Amino Acids

82.72

Weight (kDa)

6.27

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	340 - 554	1.4e-47	Elongation factor Tu GTP binding domain
GTP_EFTU_D2	PF03144	584 - 647	4.5e-09	Elongation factor Tu domain 2
GTP_EFTU_D3	PF03143	655 - 759	8.7e-10	Elongation factor Tu C-terminal domain
GTP-eEF1A_C	PF22594	659 - 756	4.2e-22	GTP-eEF1A C-terminal domain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31390 AT4G31390 AT4G31390
fragaria_vesca	FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36930 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931 FvH4_2g36931
malus_domestica	MD08G1131400.v1.1 MD15G1109000.v1.1 MD15G1109100.v1.1
prunus_persica	Prupe.1G461300_v2.0.a1 Prupe.1G461300_v2.0.a1 Prupe.1G461300_v2.0.a1
pyrus_communis	pycom08g11010 pycom15g09950
rosa_chinensis	RchiOBHm_Chr6g0304841 RchiOBHm_Chr6g0304851
rosa_laevigata	RLG00000010945
rosa_multiflora	Rmu_sc0010715.1_g000003 Rmu_sc0010715.1_g000004 Rmu_sc0030552.1_g000002 Rmu_sc0030552.1_g000003 Rmu_ssc0000278.1_g000008
rosa_roxburghii	Rroxscaffold_7G00163410 Rroxscaffold_7G00163420
rosa_rugosa	Rorug06G0335300 Rorug06G0335300 Rorug06G0335300 Rorug06G0335400 Rorug06G0335500 Rorug06G0335600 Rorug06G0335600
rosa_samantha	Rh6AG446900 Rh6BG454700 Rh6CG460400 Rh6DG447400
rosa_wichuraiana	Rw6G038890 Rw6G038900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2279
AasI	GACNNNNNNGTC	1 cut(s)	2119
AccB1I	GGYRCC	1 cut(s)	758
AccBSI	CCGCTC	1 cut(s)	1830
AccI	GTMKAC	2 cut(s)	1072, 2134
AccII	CGCG	1 cut(s)	331
AciI	CCGC	3 cut(s)	329, 1442, 1828
AclWI	GGATC	5 cut(s)	537, 952, 1485, 1792, 2090
AcoI	YGGCCR	2 cut(s)	303, 1276
AcsI	RAATTY	4 cut(s)	440, 711, 1582, 2036
AcuI	CTGAAG	2 cut(s)	1527, 1791
AfaI	GTAC	1 cut(s)	169
AfeI	AGCGCT	1 cut(s)	886
AfiI	CCNNNNNNNGG	1 cut(s)	2056
AflIII	ACRYGT	2 cut(s)	894, 1039
AgsI	TTSAA	9 cut(s)	269, 496, 561, 1466, 1534, 1650, 1664, 1685, 1898
AjnI	CCWGG	1 cut(s)	1273
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AloI	GAACNNNNNNTCC	4 cut(s)	884, 916, 1776, 1808
Alw21I	GWGCWC	2 cut(s)	1774, 1938
Alw26I	GTCTC	1 cut(s)	2127
AlwI	GGATC	5 cut(s)	537, 952, 1485, 1792, 2090
Aor51HI	AGCGCT	1 cut(s)	886
AoxI	GGCC	4 cut(s)	303, 1276, 1688, 2254
ApeKI	GCWGC	5 cut(s)	608, 674, 808, 1328, 2063
ApoI	RAATTY	4 cut(s)	440, 711, 1582, 2036
AseI	ATTAAT	2 cut(s)	480, 2090
AspLEI	GCGC	2 cut(s)	333, 887
AspS9I	GGNCC	5 cut(s)	428, 1555, 1631, 2177, 2254
AsuHPI	GGTGA	4 cut(s)	659, 1073, 1886, 1934
AsuII	TTCGAA	2 cut(s)	923, 1365
AvaII	GGWCC	4 cut(s)	428, 1555, 1631, 2177
BaeGI	GKGCMC	1 cut(s)	637
BalI	TGGCCA	2 cut(s)	305, 1278
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	1774
BauI	CACGAG	2 cut(s)	954, 1672
BbsI	GAAGAC	3 cut(s)	48, 579, 891
Bbv12I	GWGCWC	2 cut(s)	1774, 1938
BbvI	GCAGC	5 cut(s)	595, 686, 795, 1315, 2050
BccI	CCATC	5 cut(s)	517, 747, 1447, 1901, 1915
BciT130I	CCWGG	1 cut(s)	1275
BclI	TGATCA	1 cut(s)	1426
BcoDI	GTCTC	1 cut(s)	2127
BfaI	CTAG	5 cut(s)	696, 882, 909, 939, 2216
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	888
BglI	GCCNNNNNGGC	1 cut(s)	2060
BglII	AGATCT	2 cut(s)	911, 1721
BisI	GCNGC	6 cut(s)	329, 609, 675, 809, 1329, 2064
BlsI	GCNGC	6 cut(s)	330, 610, 676, 810, 1330, 2065
Bme1390I	CCNGG	1 cut(s)	1275
Bme18I	GGWCC	4 cut(s)	428, 1555, 1631, 2177
BmgT120I	GGNCC	5 cut(s)	428, 1555, 1631, 2177, 2254
BmiI	GGNNCC	5 cut(s)	430, 760, 1556, 1557, 2286
BmrFI	CCNGG	1 cut(s)	1275
BmsI	GCATC	8 cut(s)	40, 266, 302, 329, 895, 972, 1315, 1336
BoxI	GACNNNNGTC	1 cut(s)	1741
BpiI	GAAGAC	3 cut(s)	48, 579, 891
BplI	GAGNNNNNCTC	2 cut(s)	2212, 2244
BpmI	CTGGAG	1 cut(s)	309
Bpu14I	TTCGAA	2 cut(s)	923, 1365
Bsa29I	ATCGAT	1 cut(s)	1480
BsaBI	GATNNNNATC	1 cut(s)	541
BsaJI	CCNNGG	6 cut(s)	424, 745, 1473, 1525, 2055, 2257
BsaWI	WCCGGW	1 cut(s)	1954
BsaXI	ACNNNNNCTCC	3 cut(s)	282, 312, 2276
Bsc4I	CCNNNNNNNGG	1 cut(s)	2056
Bse1I	ACTGG	2 cut(s)	567, 2180
Bse3DI	GCAATG	1 cut(s)	1860
Bse8I	GATNNNNATC	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	1275
BseCI	ATCGAT	1 cut(s)	1480
BseDI	CCNNGG	6 cut(s)	424, 745, 1473, 1525, 2055, 2257
BseGI	GGATG	8 cut(s)	293, 509, 739, 800, 987, 1183, 1462, 2005
BseJI	GATNNNNATC	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	2056
BseMI	GCAATG	1 cut(s)	1860
BseMII	CTCAG	7 cut(s)	108, 858, 1080, 1593, 1862, 2042, 2222
BseNI	ACTGG	2 cut(s)	567, 2180
BseRI	GAGGAG	1 cut(s)	2115
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	5 cut(s)	595, 686, 795, 1315, 2050
BsgI	GTGCAG	2 cut(s)	645, 1206
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	4 cut(s)	305, 1278, 1690, 2256
BshNI	GGYRCC	1 cut(s)	758
BshVI	ATCGAT	1 cut(s)	1480
BsiHKAI	GWGCWC	2 cut(s)	1774, 1938
BsiSI	CCGG	3 cut(s)	1955, 2272, 2288
BslFI	GGGAC	5 cut(s)	1104, 1395, 1541, 1749, 1834
BslI	CCNNNNNNNGG	1 cut(s)	2056
BsmAI	GTCTC	1 cut(s)	2127
BsmFI	GGGAC	5 cut(s)	1104, 1395, 1541, 1749, 1834
BsmI	GAATGC	3 cut(s)	919, 949, 1361
BsnI	GGCC	4 cut(s)	305, 1278, 1690, 2256
Bsp119I	TTCGAA	2 cut(s)	923, 1365
Bsp1286I	GDGCHC	3 cut(s)	637, 1774, 1938
Bsp1407I	TGTACA	1 cut(s)	167
Bsp143I	GATC	8 cut(s)	542, 911, 944, 1426, 1477, 1721, 1784, 2095
Bsp19I	CCATGG	1 cut(s)	745
BspACI	CCGC	3 cut(s)	329, 1442, 1828
BspANI	GGCC	4 cut(s)	305, 1278, 1690, 2256
BspCNI	CTCAG	7 cut(s)	109, 859, 1079, 1594, 1861, 2041, 2223
BspDI	ATCGAT	1 cut(s)	1480
BspFNI	CGCG	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	5 cut(s)	430, 760, 1556, 1557, 2286
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	5 cut(s)	537, 952, 1485, 1792, 2090
BspQI	GCTCTTC	2 cut(s)	1779, 2187
BspT104I	TTCGAA	2 cut(s)	923, 1365
BspT107I	GGYRCC	1 cut(s)	758
BsrBI	CCGCTC	1 cut(s)	1830
BsrDI	GCAATG	1 cut(s)	1860
BsrGI	TGTACA	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	567, 2180
BssECI	CCNNGG	6 cut(s)	424, 745, 1473, 1525, 2055, 2257
BssMI	GATC	8 cut(s)	542, 911, 944, 1426, 1477, 1721, 1784, 2095
BssSI	CACGAG	2 cut(s)	954, 1672
BssT1I	CCWWGG	4 cut(s)	424, 745, 1473, 2055
Bst2BI	CACGAG	2 cut(s)	954, 1672
Bst2UI	CCWGG	1 cut(s)	1275
Bst4CI	ACNGT	6 cut(s)	136, 265, 797, 1825, 2071, 2251
Bst6I	CTCTTC	5 cut(s)	384, 825, 1779, 1899, 2187
BstAUI	TGTACA	1 cut(s)	167
BstBI	TTCGAA	2 cut(s)	923, 1365
BstC8I	GCNNGC	2 cut(s)	863, 1934
BstDEI	CTNAG	9 cut(s)	117, 612, 867, 888, 1066, 1602, 1848, 2028, 2231
BstDSI	CCRYGG	2 cut(s)	745, 1525
BstF5I	GGATG	8 cut(s)	293, 509, 739, 800, 987, 1183, 1462, 2005
BstFNI	CGCG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	888
BstHHI	GCGC	2 cut(s)	333, 887
BstKTI	GATC	8 cut(s)	545, 914, 947, 1429, 1480, 1724, 1787, 2098
BstMAI	GTCTC	1 cut(s)	2127
BstMBI	GATC	8 cut(s)	542, 911, 944, 1426, 1477, 1721, 1784, 2095
BstMWI	GCNNNNNNNGC	5 cut(s)	632, 1319, 1328, 1367, 2060
BstNI	CCWGG	1 cut(s)	1275
BstNSI	RCATGY	4 cut(s)	898, 1114, 1400, 1857
BstPAI	GACNNNNGTC	1 cut(s)	1741
BstSCI	CCNGG	1 cut(s)	1273
BstSFI	CTRYAG	1 cut(s)	672
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	5 cut(s)	595, 686, 795, 1315, 2050
BstV2I	GAAGAC	3 cut(s)	48, 579, 891
BstX2I	RGATCY	2 cut(s)	911, 1721
BstXI	CCANNNNNNTGG	2 cut(s)	746, 1526
BstYI	RGATCY	2 cut(s)	911, 1721
Bsu15I	ATCGAT	1 cut(s)	1480
BsuRI	GGCC	4 cut(s)	305, 1278, 1690, 2256
BsuTUI	ATCGAT	1 cut(s)	1480
BtgI	CCRYGG	2 cut(s)	745, 1525
BtsCI	GGATG	8 cut(s)	293, 509, 739, 800, 987, 1183, 1462, 2005
BtsI	GCAGTG	1 cut(s)	1691
BtsIMutI	CAGTG	4 cut(s)	574, 1551, 1691, 2247
Cac8I	GCNNGC	2 cut(s)	863, 1934
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	2 cut(s)	333, 887
Cfr13I	GGNCC	5 cut(s)	428, 1555, 1631, 2177, 2254
ClaI	ATCGAT	1 cut(s)	1480
Csp6I	GTAC	1 cut(s)	168
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	9 cut(s)	117, 612, 867, 888, 1066, 1602, 1848, 2028, 2231
DpnI	GATC	8 cut(s)	544, 913, 946, 1428, 1479, 1723, 1786, 2097
DpnII	GATC	8 cut(s)	542, 911, 944, 1426, 1477, 1721, 1784, 2095
DrdI	GACNNNNNNGTC	1 cut(s)	2119
DseDI	GACNNNNNNGTC	1 cut(s)	2119
EaeI	YGGCCR	2 cut(s)	303, 1276
Eam1104I	CTCTTC	5 cut(s)	384, 825, 1779, 1899, 2187
EarI	CTCTTC	5 cut(s)	384, 825, 1779, 1899, 2187
Ecl136II	GAGCTC	1 cut(s)	1772
Eco130I	CCWWGG	4 cut(s)	424, 745, 1473, 2055
Eco24I	GRGCYC	1 cut(s)	1774
Eco32I	GATATC	2 cut(s)	421, 1305
Eco47I	GGWCC	4 cut(s)	428, 1555, 1631, 2177
Eco47III	AGCGCT	1 cut(s)	886
Eco53kI	GAGCTC	1 cut(s)	1772
Eco57I	CTGAAG	2 cut(s)	1527, 1791
EcoICRI	GAGCTC	1 cut(s)	1772
EcoO109I	RGGNCCY	2 cut(s)	428, 1555
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	1273
EcoRV	GATATC	2 cut(s)	421, 1305
EcoT14I	CCWWGG	4 cut(s)	424, 745, 1473, 2055
EcoT38I	GRGCYC	1 cut(s)	1774
ErhI	CCWWGG	4 cut(s)	424, 745, 1473, 2055
FalI	AAGNNNNNCTT	2 cut(s)	1977, 2009
FaqI	GGGAC	5 cut(s)	1104, 1395, 1541, 1749, 1834
FauNDI	CATATG	3 cut(s)	172, 825, 1162
FbaI	TGATCA	1 cut(s)	1426
FblI	GTMKAC	2 cut(s)	1072, 2134
Fnu4HI	GCNGC	6 cut(s)	329, 609, 675, 809, 1329, 2064
FokI	GGATG	8 cut(s)	280, 496, 726, 787, 994, 1190, 1469, 2012
FriOI	GRGCYC	1 cut(s)	1774
Fsp4HI	GCNGC	6 cut(s)	329, 609, 675, 809, 1329, 2064
FspBI	CTAG	5 cut(s)	696, 882, 909, 939, 2216
GlaI	GCGC	2 cut(s)	332, 886
GluI	GCNGC	6 cut(s)	329, 609, 675, 809, 1329, 2064
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	888
HaeIII	GGCC	4 cut(s)	305, 1278, 1690, 2256
HapII	CCGG	3 cut(s)	1955, 2272, 2288
HhaI	GCGC	2 cut(s)	333, 887
Hin6I	GCGC	2 cut(s)	331, 885
HinP1I	GCGC	2 cut(s)	331, 885
HincII	GTYRAC	1 cut(s)	1447
HindII	GTYRAC	1 cut(s)	1447
HindIII	AAGCTT	2 cut(s)	410, 1414
HpaI	GTTAAC	1 cut(s)	1447
HpaII	CCGG	3 cut(s)	1955, 2272, 2288
HphI	GGTGA	4 cut(s)	659, 1073, 1886, 1934
Hpy166II	GTNNAC	5 cut(s)	16, 1073, 1447, 1631, 2135
Hpy188I	TCNGA	8 cut(s)	384, 658, 793, 904, 1412, 1603, 1779, 2232
Hpy188III	TCNNGA	9 cut(s)	288, 437, 591, 939, 954, 989, 1050, 1242, 1809
Hpy8I	GTNNAC	5 cut(s)	16, 1073, 1447, 1631, 2135
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	6 cut(s)	179, 263, 1608, 1644, 1670, 1815
HpyCH4III	ACNGT	6 cut(s)	136, 265, 797, 1825, 2071, 2251
HpyCH4IV	ACGT	1 cut(s)	1041
HpyF10VI	GCNNNNNNNGC	5 cut(s)	632, 1319, 1328, 1367, 2060
HpyF3I	CTNAG	9 cut(s)	117, 612, 867, 888, 1066, 1602, 1848, 2028, 2231
HpySE526I	ACGT	1 cut(s)	1041
HspAI	GCGC	2 cut(s)	331, 885
KflI	GGGWCCC	1 cut(s)	1555
Ksp22I	TGATCA	1 cut(s)	1426
KspAI	GTTAAC	1 cut(s)	1447
Kzo9I	GATC	8 cut(s)	542, 911, 944, 1426, 1477, 1721, 1784, 2095
LguI	GCTCTTC	2 cut(s)	1779, 2187
LmnI	GCTCC	6 cut(s)	290, 493, 1600, 1769, 2220, 2284
Lsp1109I	GCAGC	5 cut(s)	595, 686, 795, 1315, 2050
LweI	GCATC	8 cut(s)	40, 266, 302, 329, 895, 972, 1315, 1336
MaeI	CTAG	5 cut(s)	696, 882, 909, 939, 2216
MaeII	ACGT	1 cut(s)	1041
MaeIII	GTNAC	6 cut(s)	200, 1137, 1874, 1888, 1940, 2110
MalI	GATC	8 cut(s)	544, 913, 946, 1428, 1479, 1723, 1786, 2097
MbiI	CCGCTC	1 cut(s)	1830
MboI	GATC	8 cut(s)	542, 911, 944, 1426, 1477, 1721, 1784, 2095
MfeI	CAATTG	2 cut(s)	1029, 1650
MflI	RGATCY	2 cut(s)	911, 1721
MhlI	GDGCHC	3 cut(s)	637, 1774, 1938
MlsI	TGGCCA	2 cut(s)	305, 1278
MluNI	TGGCCA	2 cut(s)	305, 1278
MlyI	GAGTC	2 cut(s)	593, 880
MmeI	TCCRAC	5 cut(s)	220, 555, 771, 1015, 1623
Mox20I	TGGCCA	2 cut(s)	305, 1278
MscI	TGGCCA	2 cut(s)	305, 1278
MseI	TTAA	6 cut(s)	122, 480, 1010, 1446, 2018, 2090
MslI	CAYNNNNRTG	4 cut(s)	468, 744, 1119, 1524
Msp20I	TGGCCA	2 cut(s)	305, 1278
MspI	CCGG	3 cut(s)	1955, 2272, 2288
MspR9I	CCNGG	1 cut(s)	1275
MunI	CAATTG	2 cut(s)	1029, 1650
Mva1269I	GAATGC	3 cut(s)	919, 949, 1361
MvaI	CCWGG	1 cut(s)	1275
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	5 cut(s)	632, 1319, 1328, 1367, 2060
NcoI	CCATGG	1 cut(s)	745
NdeI	CATATG	3 cut(s)	172, 825, 1162
NdeII	GATC	8 cut(s)	542, 911, 944, 1426, 1477, 1721, 1784, 2095
NlaIV	GGNNCC	5 cut(s)	430, 760, 1556, 1557, 2286
NmuCI	GTSAC	5 cut(s)	200, 1137, 1874, 1940, 2110
NspI	RCATGY	4 cut(s)	898, 1114, 1400, 1857
NspV	TTCGAA	2 cut(s)	923, 1365
PagI	TCATGA	1 cut(s)	436
PciI	ACATGT	1 cut(s)	894
PciSI	GCTCTTC	2 cut(s)	1779, 2187
PctI	GAATGC	3 cut(s)	919, 949, 1361
PfeI	GAWTC	9 cut(s)	284, 1021, 1046, 1238, 1268, 1538, 1646, 1655, 1844
PkrI	GCNGC	6 cut(s)	330, 610, 676, 810, 1330, 2065
PleI	GAGTC	2 cut(s)	592, 879
PpsI	GAGTC	2 cut(s)	592, 879
PpuMI	RGGWCCY	2 cut(s)	428, 1555
PscI	ACATGT	1 cut(s)	894
PshAI	GACNNNNGTC	1 cut(s)	1741
PshBI	ATTAAT	2 cut(s)	480, 2090
PsiI	TTATAA	1 cut(s)	2279
Psp124BI	GAGCTC	1 cut(s)	1774
Psp5II	RGGWCCY	2 cut(s)	428, 1555
Psp6I	CCWGG	1 cut(s)	1273
PspGI	CCWGG	1 cut(s)	1273
PspN4I	GGNNCC	5 cut(s)	430, 760, 1556, 1557, 2286
PspPI	GGNCC	5 cut(s)	428, 1555, 1631, 2177, 2254
PspPPI	RGGWCCY	2 cut(s)	428, 1555
PstI	CTGCAG	1 cut(s)	676
PsuI	RGATCY	2 cut(s)	911, 1721
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	4 cut(s)	468, 744, 1119, 1524
SacI	GAGCTC	1 cut(s)	1774
SapI	GCTCTTC	2 cut(s)	1779, 2187
SaqAI	TTAA	6 cut(s)	122, 480, 1010, 1446, 2018, 2090
SatI	GCNGC	6 cut(s)	329, 609, 675, 809, 1329, 2064
Sau3AI	GATC	8 cut(s)	542, 911, 944, 1426, 1477, 1721, 1784, 2095
Sau96I	GGNCC	5 cut(s)	428, 1555, 1631, 2177, 2254
SchI	GAGTC	2 cut(s)	593, 880
ScrFI	CCNGG	1 cut(s)	1275
SduI	GDGCHC	3 cut(s)	637, 1774, 1938
SfaNI	GCATC	8 cut(s)	40, 266, 302, 329, 895, 972, 1315, 1336
SfcI	CTRYAG	1 cut(s)	672
SfuI	TTCGAA	2 cut(s)	923, 1365
SinI	GGWCC	4 cut(s)	428, 1555, 1631, 2177
SmiMI	CAYNNNNRTG	4 cut(s)	468, 744, 1119, 1524
SsiI	CCGC	3 cut(s)	329, 1442, 1828
SspI	AATATT	2 cut(s)	250, 2082
SspMI	CTAG	5 cut(s)	696, 882, 909, 939, 2216
SstI	GAGCTC	1 cut(s)	1774
StyD4I	CCNGG	1 cut(s)	1273
StyI	CCWWGG	4 cut(s)	424, 745, 1473, 2055
TaaI	ACNGT	6 cut(s)	136, 265, 797, 1825, 2071, 2251
TaiI	ACGT	1 cut(s)	1044
TaqI	TCGA	4 cut(s)	602, 923, 1365, 1480
TatI	WGTACW	1 cut(s)	167
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	9 cut(s)	284, 1021, 1046, 1238, 1268, 1538, 1646, 1655, 1844
Tru1I	TTAA	6 cut(s)	122, 480, 1010, 1446, 2018, 2090
Tru9I	TTAA	6 cut(s)	122, 480, 1010, 1446, 2018, 2090
TscAI	CASTG	4 cut(s)	574, 1551, 1698, 2254
TseFI	GTSAC	5 cut(s)	200, 1137, 1874, 1940, 2110
TseI	GCWGC	5 cut(s)	608, 674, 808, 1328, 2063
Tsp45I	GTSAC	5 cut(s)	200, 1137, 1874, 1940, 2110
TspGWI	ACGGA	2 cut(s)	286, 549
TspRI	CASTG	4 cut(s)	574, 1551, 1698, 2254
VpaK11BI	GGWCC	4 cut(s)	428, 1555, 1631, 2177
VspI	ATTAAT	2 cut(s)	480, 2090
XapI	RAATTY	4 cut(s)	440, 711, 1582, 2036
XbaI	TCTAGA	1 cut(s)	938
XceI	RCATGY	4 cut(s)	898, 1114, 1400, 1857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmiI	GTMKAC	2 cut(s)	1072, 2134
XspI	CTAG	5 cut(s)	696, 882, 909, 939, 2216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.