Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003440

Physical Location & Seq

Genomic Coordinates Forward (+)

14589553 .. 14590020

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAAACAGACCCGAGATTAGCTTTGAAGCCAAAGACAATTATGCACAACAGCACAGAGAGCTTTTGTTTGATCTTGATAATTTAGAATTGGAGCTGCAGCAACTTACTTCTAAAATTGAGGGCCTTGCTGAGGACTTTATGGCATTGGAGAAATTAACTGAAGAACTAGGAAGGTGTAATCTGACCATAGCAGCATTAACAGTGGAAAAAGAAGCTTTGATGGTGTCCTTACAGGATAAAACTGATGAATCTTCCAGGCTTGCTCTCGAGCTTAATAGTTTGCAAGGGAGTTTGCTTTCTTTGCATGATGAGGTGCAAACGGAGAGAAATCTCAGAGATAAGTTAGAGAGTACAATCACAGATCTCACATCCCAATTGAACGAGAAGCATTGCCAGGTGCTAGGTTTTGGATCGATCAGCAGAAGGCTGAGCTTGTCCATCTCAAACAATTGGTTTCAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

156

Amino Acids

17.64

Weight (kDa)

4.63

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22060 AT1G22060
fragaria_vesca	FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230
malus_domestica	MD08G1176200.v1.1 MD15G1361900.v1.1
prunus_persica	Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1
pyrus_communis	pycom08g15080 pycom08g15090 pycom08g15100 pycom08g15110 pycom08g15120 pycom15g32460
rosa_chinensis	RchiOBHm_Chr7g0240181
rosa_laevigata	RLG00000000692
rosa_multiflora	Rmu_sc0005008.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220340
rosa_rugosa	Rorug07G0334100 Rorug07G0334100 Rorug07G0334200
rosa_samantha	Rh7AG487700 Rh7BG461000 Rh7CG504300 Rh7DG472500
rosa_wichuraiana	Rw7G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	29, 382
AjnI	CCWGG	2 cut(s)	257, 396
AluBI	AGCT	6 cut(s)	24, 64, 97, 218, 274, 435
AluI	AGCT	6 cut(s)	24, 64, 97, 218, 274, 435
AlwI	GGATC	1 cut(s)	421
Ama87I	CYCGRG	2 cut(s)	14, 269
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	97, 100, 194
AspS9I	GGNCC	1 cut(s)	124
AvaI	CYCGRG	2 cut(s)	14, 269
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	84, 112, 206
BccI	CCATC	2 cut(s)	217, 449
BciT130I	CCWGG	2 cut(s)	259, 398
BfaI	CTAG	3 cut(s)	170, 404, 466
BfmI	CTRYAG	1 cut(s)	98
BglII	AGATCT	2 cut(s)	364, 462
BisI	GCNGC	3 cut(s)	98, 101, 195
BlpI	GCTNAGC	1 cut(s)	431
BlsI	GCNGC	3 cut(s)	99, 102, 196
Bme1390I	CCNGG	2 cut(s)	259, 398
BmeT110I	CYCGRG	2 cut(s)	14, 269
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	259, 398
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	259, 398
BseCI	ATCGAT	1 cut(s)	416
BseGI	GGATG	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	3 cut(s)	123, 349, 422
BseXI	GCAGC	3 cut(s)	84, 112, 206
BshFI	GGCC	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	416
BsiHKCI	CYCGRG	2 cut(s)	14, 269
BslI	CCNNNNNNNGG	1 cut(s)	133
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	2 cut(s)	14, 269
Bsp143I	GATC	5 cut(s)	73, 364, 413, 417, 462
Bsp1720I	GCTNAGC	1 cut(s)	431
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	3 cut(s)	124, 348, 423
BspDI	ATCGAT	1 cut(s)	416
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	391
BssMI	GATC	5 cut(s)	73, 364, 413, 417, 462
Bst2UI	CCWGG	2 cut(s)	259, 398
Bst4CI	ACNGT	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	132, 335, 431
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	371
BstKTI	GATC	5 cut(s)	76, 367, 416, 420, 465
BstMBI	GATC	5 cut(s)	73, 364, 413, 417, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 304
BstNI	CCWGG	2 cut(s)	259, 398
BstSCI	CCNGG	2 cut(s)	257, 396
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	84, 112, 206
BstX2I	RGATCY	2 cut(s)	364, 462
BstYI	RGATCY	2 cut(s)	364, 462
Bsu15I	ATCGAT	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	1 cut(s)	308
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	3 cut(s)	132, 335, 431
DpnI	GATC	5 cut(s)	75, 366, 415, 419, 464
DpnII	GATC	5 cut(s)	73, 364, 413, 417, 462
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	2 cut(s)	14, 269
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	257, 396
FaeI	CATG	1 cut(s)	311
FaiI	YATR	4 cut(s)	45, 143, 191, 309
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	98, 101, 195
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	3 cut(s)	98, 101, 195
FspBI	CTAG	3 cut(s)	170, 404, 466
GluI	GCNGC	3 cut(s)	98, 101, 195
HaeIII	GGCC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	251
Hpy188I	TCNGA	3 cut(s)	186, 338, 462
Hpy188III	TCNNGA	2 cut(s)	77, 269
HpyAV	CCTTC	2 cut(s)	168, 420
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	5 cut(s)	47, 100, 286, 307, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 304
HpyF3I	CTNAG	3 cut(s)	132, 335, 431
Hsp92II	CATG	1 cut(s)	311
Kzo9I	GATC	5 cut(s)	73, 364, 413, 417, 462
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	221, 244, 271, 383, 410
Lsp1109I	GCAGC	3 cut(s)	84, 112, 206
MaeI	CTAG	3 cut(s)	170, 404, 466
MalI	GATC	5 cut(s)	75, 366, 415, 419, 464
MboI	GATC	5 cut(s)	73, 364, 413, 417, 462
MboII	GAAGA	2 cut(s)	176, 246
MfeI	CAATTG	2 cut(s)	377, 451
MflI	RGATCY	2 cut(s)	364, 462
MluCI	AATT	7 cut(s)	40, 82, 89, 117, 155, 377, 451
MnlI	CCTC	3 cut(s)	115, 127, 307
MseI	TTAA	3 cut(s)	158, 200, 276
MspR9I	CCNGG	2 cut(s)	259, 398
MunI	CAATTG	2 cut(s)	377, 451
MvaI	CCWGG	2 cut(s)	259, 398
MwoI	GCNNNNNNNGC	2 cut(s)	61, 304
NdeII	GATC	5 cut(s)	73, 364, 413, 417, 462
NlaIII	CATG	1 cut(s)	311
PaeR7I	CTCGAG	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	99, 102, 196
Psp6I	CCWGG	2 cut(s)	257, 396
PspGI	CCWGG	2 cut(s)	257, 396
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	364, 462
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	158, 200, 276
SatI	GCNGC	3 cut(s)	98, 101, 195
Sau3AI	GATC	5 cut(s)	73, 364, 413, 417, 462
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	259, 398
SfcI	CTRYAG	1 cut(s)	98
Sfr274I	CTCGAG	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	7 cut(s)	40, 82, 89, 117, 155, 377, 451
SspMI	CTAG	3 cut(s)	170, 404, 466
StyD4I	CCNGG	2 cut(s)	257, 396
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	270, 416
TasI	AATT	7 cut(s)	40, 82, 89, 117, 155, 377, 451
TatI	WGTACW	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	158, 200, 276
Tru9I	TTAA	3 cut(s)	158, 200, 276
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	3 cut(s)	97, 100, 194
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	210
XagI	CCTNNNNNAGG	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	3 cut(s)	170, 404, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.