Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003440

Physical Location & Seq

Genomic Coordinates Forward (+)

36668826 .. 36671707

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0334100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTACCACTGCAGCCGAAGATTGCAAGCAACGTTTTGGAGCAGACAAACCTGGGTCCGATTCCAGAAGCAACCATTTTGCTCCAAACCCCCCCATGGTCTGACTACATACGACGAGTCGTTGAAGAAGCTTGACAAGCTAGACTTCTTGACTGCCGCTAAAATGCTCTTCACTGACCCGCCCAAGAAAAAGAAATTTGGGCTTGATTTCCATCTGGTACAACTATTCTTTGCTTGTATGCCTTCCTTGGCTGTATATCTGGTAGCTCAATATGCTCGCTATGATATGAGAAAAATGGAAGCAGAACTGGAGCAGAAAAAGAAGAAACAAGAAGAAGAGAAAGTGGAAGAAATAGAACTAAATGCTACGAAAGAAAAAGAAGCAAGATCGGTTCCGGAGCTTTCGGAGGTGAGAGAGAGATTAGAAAAACTTGAAGAAACTGTGAAGGGAATTGCGGCTGAGACGAAGAAACAAACCGTCAATGGCCAAGCAAAAGGCCATGAAGGTGACAGTGCAAAGAAAAGTTTTGGAACTGAGGCACGTACCCTGAGTAGTTCAGAATCTAGCAAGCCAGTTGAGAAAGACCCCCTCAAACAGGATTCTGTAGGGCCAAGGCCAGCTGCAAGCCCCCTCAAACAGGATTCTGTAGGGCCAAGGCCAGCTGCAAGCAAGGATAGATTAACCGCTGTAGGAACAGTTCCTAATGCTTCTCCAGAGGGCAAGATCCAAGATGGCGGGCCTTCTCAAGATGCTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

253

Amino Acids

28.43

Weight (kDa)

9.29

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22060 AT1G22060
fragaria_vesca	FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230
malus_domestica	MD08G1176200.v1.1 MD15G1361900.v1.1
prunus_persica	Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1
pyrus_communis	pycom08g15080 pycom08g15090 pycom08g15100 pycom08g15110 pycom08g15120 pycom15g32460
rosa_chinensis	RchiOBHm_Chr7g0240181
rosa_laevigata	RLG00000000692
rosa_multiflora	Rmu_sc0005008.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220340
rosa_rugosa	Rorug07G0334100 Rorug07G0334100 Rorug07G0334200
rosa_samantha	Rh7AG487700 Rh7BG461000 Rh7CG504300 Rh7DG472500
rosa_wichuraiana	Rw7G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	5 cut(s)	156, 179, 455, 684, 735
AclI	AACGTT	1 cut(s)	32
AclWI	GGATC	1 cut(s)	718
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	3 cut(s)	5, 219, 544
AfiI	CCNNNNNNNGG	3 cut(s)	95, 595, 637
AgsI	TTSAA	2 cut(s)	124, 434
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	6 cut(s)	130, 139, 266, 400, 620, 662
AluI	AGCT	6 cut(s)	130, 139, 266, 400, 620, 662
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	718
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	7 cut(s)	484, 496, 608, 614, 650, 656, 737
ApeKI	GCWGC	3 cut(s)	12, 620, 662
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	55, 608, 650, 737
AsuHPI	GGTGA	2 cut(s)	421, 518
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	24, 607, 649
BccI	CCATC	2 cut(s)	219, 725
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	2 cut(s)	140, 564
BfmI	CTRYAG	4 cut(s)	10, 603, 645, 687
BisI	GCNGC	5 cut(s)	13, 156, 456, 621, 663
BlsI	GCNGC	5 cut(s)	14, 157, 457, 622, 664
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	4 cut(s)	55, 608, 650, 737
BmiI	GGNNCC	2 cut(s)	56, 393
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	739
BpmI	CTGGAG	2 cut(s)	329, 696
BpuEI	CTTGAG	1 cut(s)	729
BsaAI	YACGTR	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	5 cut(s)	51, 94, 246, 611, 653
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 595, 637
Bse1I	ACTGG	2 cut(s)	312, 572
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	5 cut(s)	51, 94, 246, 611, 653
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	95, 595, 637
BseMII	CTCAG	3 cut(s)	450, 525, 539
BseNI	ACTGG	2 cut(s)	312, 572
BseXI	GCAGC	3 cut(s)	24, 607, 649
BshFI	GGCC	7 cut(s)	486, 498, 610, 616, 652, 658, 739
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	3 cut(s)	95, 595, 637
BsmAI	GTCTC	1 cut(s)	455
BsmBI	CGTCTC	1 cut(s)	455
BsnI	GGCC	7 cut(s)	486, 498, 610, 616, 652, 658, 739
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	386, 723
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	5 cut(s)	156, 179, 455, 684, 735
BspANI	GGCC	7 cut(s)	486, 498, 610, 616, 652, 658, 739
BspCNI	CTCAG	3 cut(s)	451, 526, 540
BspEI	TCCGGA	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	56, 393
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	718
BspQI	GCTCTTC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	312, 572
BssECI	CCNNGG	5 cut(s)	51, 94, 246, 611, 653
BssMI	GATC	2 cut(s)	386, 723
BssT1I	CCWWGG	4 cut(s)	94, 246, 611, 653
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	4 cut(s)	442, 478, 512, 697
Bst6I	CTCTTC	2 cut(s)	173, 330
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	8 cut(s)	27, 277, 569, 618, 625, 660, 667, 737
BstDEI	CTNAG	3 cut(s)	459, 534, 548
BstDSI	CCRYGG	1 cut(s)	94
BstENI	CCTNNNNNAGG	2 cut(s)	593, 635
BstKTI	GATC	2 cut(s)	389, 726
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	386, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 272
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	4 cut(s)	10, 603, 645, 687
BstV1I	GCAGC	3 cut(s)	24, 607, 649
BstX2I	RGATCY	1 cut(s)	723
BstYI	RGATCY	1 cut(s)	723
BsuRI	GGCC	7 cut(s)	486, 498, 610, 616, 652, 658, 739
BtgI	CCRYGG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	3 cut(s)	7, 171, 517
Cac8I	GCNNGC	8 cut(s)	27, 277, 569, 618, 625, 660, 667, 737
Cfr13I	GGNCC	4 cut(s)	55, 608, 650, 737
Csp6I	GTAC	3 cut(s)	4, 218, 543
CviAII	CATG	2 cut(s)	95, 500
CviQI	GTAC	3 cut(s)	4, 218, 543
DdeI	CTNAG	3 cut(s)	459, 534, 548
DpnI	GATC	2 cut(s)	388, 725
DpnII	GATC	2 cut(s)	386, 723
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	173, 330
EarI	CTCTTC	2 cut(s)	173, 330
Eco130I	CCWWGG	4 cut(s)	94, 246, 611, 653
Eco47I	GGWCC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	2 cut(s)	593, 635
EcoRII	CCWGG	1 cut(s)	50
EcoT14I	CCWWGG	4 cut(s)	94, 246, 611, 653
ErhI	CCWWGG	4 cut(s)	94, 246, 611, 653
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	2 cut(s)	98, 503
FaiI	YATR	8 cut(s)	96, 109, 239, 256, 273, 282, 287, 501
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	2 cut(s)	94, 499
FauI	CCCGC	2 cut(s)	186, 728
Fnu4HI	GCNGC	5 cut(s)	13, 156, 456, 621, 663
Fsp4HI	GCNGC	5 cut(s)	13, 156, 456, 621, 663
FspBI	CTAG	2 cut(s)	140, 564
GluI	GCNGC	5 cut(s)	13, 156, 456, 621, 663
GsuI	CTGGAG	2 cut(s)	329, 696
HaeIII	GGCC	7 cut(s)	486, 498, 610, 616, 652, 658, 739
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	2 cut(s)	98, 503
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	5 cut(s)	60, 116, 560, 599, 641
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	2 cut(s)	421, 518
Hpy188I	TCNGA	4 cut(s)	59, 102, 406, 559
Hpy188III	TCNNGA	5 cut(s)	64, 148, 395, 713, 746
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	252, 439, 497, 750
HpyCH4III	ACNGT	4 cut(s)	442, 478, 512, 697
HpyCH4IV	ACGT	2 cut(s)	32, 541
HpyCH4V	TGCA	5 cut(s)	12, 25, 515, 623, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 272
HpyF3I	CTNAG	3 cut(s)	459, 534, 548
HpySE526I	ACGT	2 cut(s)	32, 541
Hsp92II	CATG	2 cut(s)	98, 503
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	386, 723
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	4 cut(s)	39, 86, 310, 397
Lsp1109I	GCAGC	3 cut(s)	24, 607, 649
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	2 cut(s)	140, 564
MaeII	ACGT	2 cut(s)	32, 541
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	2 cut(s)	388, 725
MboI	GATC	2 cut(s)	386, 723
MboII	GAAGA	9 cut(s)	30, 136, 160, 334, 344, 347, 359, 446, 478
MflI	RGATCY	1 cut(s)	723
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	2 cut(s)	194, 450
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	400, 529, 599, 641, 709
Mox20I	TGGCCA	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	1 cut(s)	680
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	486
MspA1I	CMGCKG	3 cut(s)	620, 662, 686
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	136, 272
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	386, 723
NlaIII	CATG	2 cut(s)	98, 503
NlaIV	GGNNCC	2 cut(s)	56, 393
NmuCI	GTSAC	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	173
PfeI	GAWTC	4 cut(s)	60, 560, 599, 641
PkrI	GCNGC	5 cut(s)	14, 157, 457, 622, 664
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	542
Psp1406I	AACGTT	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	56, 393
PspPI	GGNCC	4 cut(s)	55, 608, 650, 737
PsrI	GAACNNNNNNTAC	2 cut(s)	681, 713
PstI	CTGCAG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	723
PvuII	CAGCTG	2 cut(s)	620, 662
RsaI	GTAC	3 cut(s)	5, 219, 544
RsaNI	GTAC	3 cut(s)	4, 218, 543
RseI	CAYNNNNRTG	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	5 cut(s)	13, 156, 456, 621, 663
Sau3AI	GATC	2 cut(s)	386, 723
Sau96I	GGNCC	4 cut(s)	55, 608, 650, 737
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	4 cut(s)	10, 603, 645, 687
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
Sse9I	AATT	2 cut(s)	194, 450
SsiI	CCGC	5 cut(s)	156, 179, 455, 684, 735
SspMI	CTAG	2 cut(s)	140, 564
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	4 cut(s)	94, 246, 611, 653
TaaI	ACNGT	4 cut(s)	442, 478, 512, 697
TaiI	ACGT	2 cut(s)	35, 544
TasI	AATT	2 cut(s)	194, 450
TauI	GCSGC	2 cut(s)	158, 458
TfiI	GAWTC	4 cut(s)	60, 560, 599, 641
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	3 cut(s)	14, 178, 517
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	3 cut(s)	12, 620, 662
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	14, 178, 517
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	2 cut(s)	593, 635
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	2 cut(s)	140, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.