Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003440

Physical Location & Seq

Genomic Coordinates Forward (+)

14590612 .. 14593287

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15110.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGCATGAATCTTCAATAGCTGCTGATGTTGGACTCACTTTCACAAAAGTTCAATATGAGATGAGGATTGAAGAACTAGAAAGGTATAACCTGACCATAGCGGAATTGTCAGAGGAGAAAGAAGCTTTAATGGCGTCCTTGCAGAATAAAACTGAAGAATCTTCCAAGCTTTGTCTGGAGCTTAATAGGATGCAAGGAAGTTTGCTCTCTTTGCAAGATGAGTTGCAAACTGAGAGAAATCTCAGAGATAAGTCAGAGAGTAGAATTACAGATCTGGCTTCCCAATTGATTAAGAAGAACAGTCAGTTGCTAGATTTTGATCACCAGATGGCTGAGCTGGTCCATCTCAAACAACTGGTATCGGACCTAGAACTAGAGAAATCAAGAGTTCTCGGTCTCCTGTTGGATTCTGAGAAATGTCTTAAAGACGCTCGTGAAGAGTGTTCTTCTGTCTCTGCTTTGGAAGCTCAGTTATCTGAAATGCATGAATTTTCAATAGCTGCTGATGTTGGATTCACTTTCACAAAAACTCAATATGAGGCCGTGATCAAAGAGCTTTGTCAGAAACTACACTTTTCAGATAGCCAAGTTTCTGAAATTCGCAACAATTTCCTTAATGTAGAGAATATGCTTAACAAATGTCTTGCTAGCGAAGGGCATTACCTTGAAGAGAACACCCAATTGATGACAAGTCTCAATTTCATTAAATCTGAGTTGGAAGCCTCCAGTGCTCAAAACAGGATACTTCTTGATGCAAACAGTGTTATGAGGACCGAACTTGAGGAATGCAAGAAAAGAGCTGAAAATACGGAGGATATTGTCCATATGGATAAAAGTCAGTCTGCTCTTGAGGTGGAAAGGCTGGAACATCTTCTAATGACTTCTGAAGAAGAGATTGATAACCTGATATTCTCCAAGGAAGAACTGGAAGTCAAAGCTTTAGTACTCAAAGCCAAGTTGGATGAACAGTCCGCTCAGCTAACCTTGCTGGAAGGATATAAGAATGAAATGGAAATGCTGCACGATAGATGTAGCGAGCTTACACAGAAGCTTGCTCAACAGGTCTTGAAGACAGAAGAATTTAAGAACTTGTCCATCCACTTTAAGGATCTTAAAGACAAGGCTTATGCCGAGGGCCTCCATGCGCAGGATAAAAAAGAACCAGAAAGGCCACCAACTGCTATGCAAGAGTCTTTAAGAATTGTATTCATCAAAGAACAATATGAAACCAAGCTGCAAGAACTGAAACAACAACTTGCTATGTCCAATAAGCACAGTGAGGAGATGCTCTGGAAATTACAAGATGCAGTCGACGAAGTTGAGAATAGGAAAAAATCCGAAGCTACTCATGTGAAGAGAAACGAAGGGCTAGGAATGAAGATCTTGGAATTGGAGTCTGACCTACATTCATTACTTTCTGAAAAGCGTGAAATAATGAAAGCATATGACCTGATGAAAGCTGAAAAGGAATGCTCATTAATAAGCCTCGAGTGCTGTAAGGAAGAAAAACAAGAGCTTGAAGCATCTTTGCAGAAGTGCACTGAGGAAAAAGCTAAAATTGCTTTAGAACTCACCTCAGCGAAGGATTTACTTGCGAGCAGTTCATCATCTGTAAATTATCAGAGTGGCGCAGAGGAACCTTTAGTTAAGAAGCAGACCATGAACAGAGATTGCTTTTTCTTTCTTTGCTGCTCCAAATATTACCAAAGTAATATTACTGTTAGTCCTCGGAGTCCAATCAGAAAAAACAAAAGTATGATCTATATAACAATCATAATTTGTAAAAGGATGATCGATTTGTATCTGGAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

605

Amino Acids

69.53

Weight (kDa)

5.07

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22060 AT1G22060
fragaria_vesca	FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230
malus_domestica	MD08G1176200.v1.1 MD15G1361900.v1.1
prunus_persica	Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1
pyrus_communis	pycom08g15080 pycom08g15090 pycom08g15100 pycom08g15110 pycom08g15120 pycom15g32460
rosa_chinensis	RchiOBHm_Chr7g0240181
rosa_laevigata	RLG00000000692
rosa_multiflora	Rmu_sc0005008.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220340
rosa_rugosa	Rorug07G0334100 Rorug07G0334100 Rorug07G0334200
rosa_samantha	Rh7AG487700 Rh7BG461000 Rh7CG504300 Rh7DG472500
rosa_wichuraiana	Rw7G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1146
AccBSI	CCGCTC	1 cut(s)	974
AccI	GTMKAC	1 cut(s)	1311
AciI	CCGC	2 cut(s)	101, 972
AclWI	GGATC	1 cut(s)	1116
AcsI	RAATTY	3 cut(s)	488, 597, 1079
AcuI	CTGAAG	2 cut(s)	174, 906
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	1 cut(s)	945
AfiI	CCNNNNNNNGG	2 cut(s)	1105, 1147
AgsI	TTSAA	7 cut(s)	15, 53, 71, 495, 668, 1069, 1520
Alw21I	GWGCWC	2 cut(s)	733, 1541
Alw26I	GTCTC	3 cut(s)	401, 457, 698
Alw44I	GTGCAC	1 cut(s)	1537
AlwI	GGATC	1 cut(s)	1116
Ama87I	CYCGRG	1 cut(s)	1487
AoxI	GGCC	3 cut(s)	540, 1135, 1169
ApaLI	GTGCAC	1 cut(s)	1537
ApeKI	GCWGC	5 cut(s)	20, 500, 1018, 1234, 1689
ApoI	RAATTY	3 cut(s)	488, 597, 1079
AseI	ATTAAT	1 cut(s)	1478
Asp700I	GAANNNNTTC	1 cut(s)	870
AspLEI	GCGC	2 cut(s)	1147, 1631
AspS9I	GGNCC	4 cut(s)	340, 364, 771, 1135
AsuHPI	GGTGA	2 cut(s)	314, 1564
AsuNHI	GCTAGC	1 cut(s)	647
AvaI	CYCGRG	1 cut(s)	1487
AvaII	GGWCC	3 cut(s)	340, 364, 771
BaeGI	GKGCMC	1 cut(s)	1541
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	1076
Bbv12I	GWGCWC	2 cut(s)	733, 1541
BbvCI	CCTCAGC	1 cut(s)	1576
BbvI	GCAGC	5 cut(s)	7, 487, 1005, 1221, 1676
BccI	CCATC	3 cut(s)	322, 351, 1103
BceAI	ACGGC	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	735
BclI	TGATCA	2 cut(s)	319, 546
BcoDI	GTCTC	3 cut(s)	401, 457, 698
BfaI	CTAG	6 cut(s)	77, 311, 368, 374, 648, 1370
BfuI	GTATCC	1 cut(s)	735
BglII	AGATCT	2 cut(s)	271, 1380
BisI	GCNGC	5 cut(s)	21, 501, 1019, 1235, 1690
BlpI	GCTNAGC	2 cut(s)	333, 975
BlsI	GCNGC	5 cut(s)	22, 502, 1020, 1236, 1691
BmcAI	AGTACT	1 cut(s)	945
Bme18I	GGWCC	3 cut(s)	340, 364, 771
BmeT110I	CYCGRG	1 cut(s)	1487
BmgT120I	GGNCC	4 cut(s)	340, 364, 771, 1135
BmiI	GGNNCC	1 cut(s)	1638
BmsI	GCATC	5 cut(s)	180, 742, 1275, 1294, 1532
BmtI	GCTAGC	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	1076
BpmI	CTGGAG	2 cut(s)	197, 709
Bpu10I	CCTNAGC	1 cut(s)	1576
Bpu1102I	GCTNAGC	2 cut(s)	333, 975
BpuEI	CTTGAG	2 cut(s)	800, 869
Bsa29I	ATCGAT	1 cut(s)	1794
BsaBI	GATNNNNATC	2 cut(s)	318, 1800
BsaHI	GRCGYC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	915, 1131, 1727
Bsc4I	CCNNNNNNNGG	2 cut(s)	1105, 1147
Bse1I	ACTGG	3 cut(s)	360, 726, 930
Bse8I	GATNNNNATC	2 cut(s)	318, 1800
BseCI	ATCGAT	1 cut(s)	1794
BseDI	CCNNGG	3 cut(s)	915, 1131, 1727
BseGI	GGATG	4 cut(s)	195, 967, 1095, 1794
BseJI	GATNNNNATC	2 cut(s)	318, 1800
BseLI	CCNNNNNNNGG	2 cut(s)	1105, 1147
BseMII	CTCAG	9 cut(s)	222, 256, 324, 402, 482, 702, 989, 1533, 1590
BseNI	ACTGG	3 cut(s)	360, 726, 930
BseRI	GAGGAG	2 cut(s)	128, 1295
BseSI	GKGCMC	1 cut(s)	1541
BseXI	GCAGC	5 cut(s)	7, 487, 1005, 1221, 1676
BsgI	GTGCAG	1 cut(s)	1004
BshFI	GGCC	3 cut(s)	542, 1137, 1171
BshVI	ATCGAT	1 cut(s)	1794
BsiHKAI	GWGCWC	2 cut(s)	733, 1541
BsiHKCI	CYCGRG	1 cut(s)	1487
BslI	CCNNNNNNNGG	2 cut(s)	1105, 1147
BsmAI	GTCTC	3 cut(s)	401, 457, 698
BsmI	GAATGC	2 cut(s)	791, 1475
BsnI	GGCC	3 cut(s)	542, 1137, 1171
Bso31I	GGTCTC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	1487
Bsp1286I	GDGCHC	2 cut(s)	733, 1541
Bsp143I	GATC	7 cut(s)	271, 319, 546, 1108, 1380, 1758, 1791
Bsp1720I	GCTNAGC	2 cut(s)	333, 975
BspACI	CCGC	2 cut(s)	101, 972
BspANI	GGCC	3 cut(s)	542, 1137, 1171
BspCNI	CTCAG	9 cut(s)	223, 255, 325, 403, 481, 703, 988, 1534, 1589
BspDI	ATCGAT	1 cut(s)	1794
BspLI	GGNNCC	1 cut(s)	1638
BspOI	GCTAGC	1 cut(s)	651
BspPI	GGATC	1 cut(s)	1116
BspTNI	GGTCTC	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	974
BsrI	ACTGG	3 cut(s)	360, 726, 930
BssECI	CCNNGG	3 cut(s)	915, 1131, 1727
BssMI	GATC	7 cut(s)	271, 319, 546, 1108, 1380, 1758, 1791
BssNI	GRCGYC	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	432
Bst4CI	ACNGT	5 cut(s)	302, 761, 969, 1277, 1720
Bst6I	CTCTTC	4 cut(s)	432, 663, 885, 1349
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	4 cut(s)	649, 1037, 1053, 1597
BstDEI	CTNAG	9 cut(s)	231, 242, 333, 411, 468, 711, 975, 1542, 1576
BstF5I	GGATG	4 cut(s)	195, 967, 1095, 1794
BstHHI	GCGC	2 cut(s)	1147, 1631
BstKTI	GATC	7 cut(s)	274, 322, 549, 1111, 1383, 1761, 1794
BstMAI	GTCTC	3 cut(s)	401, 457, 698
BstMBI	GATC	7 cut(s)	271, 319, 546, 1108, 1380, 1758, 1791
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 211, 464, 728, 985, 1491, 1559
BstSLI	GKGCMC	1 cut(s)	1541
BstV1I	GCAGC	5 cut(s)	7, 487, 1005, 1221, 1676
BstV2I	GAAGAC	1 cut(s)	1076
BstX2I	RGATCY	3 cut(s)	271, 1108, 1380
BstYI	RGATCY	3 cut(s)	271, 1108, 1380
Bsu15I	ATCGAT	1 cut(s)	1794
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	3 cut(s)	542, 1137, 1171
BsuTUI	ATCGAT	1 cut(s)	1794
BtsCI	GGATG	4 cut(s)	195, 967, 1095, 1794
BtsIMutI	CAGTG	4 cut(s)	733, 766, 1282, 1539
Cac8I	GCNNGC	4 cut(s)	649, 1037, 1053, 1597
CfoI	GCGC	2 cut(s)	1147, 1631
Cfr13I	GGNCC	4 cut(s)	340, 364, 771, 1135
ClaI	ATCGAT	1 cut(s)	1794
CseI	GACGC	2 cut(s)	123, 437
Csp6I	GTAC	1 cut(s)	944
CviAII	CATG	5 cut(s)	5, 485, 1142, 1349, 1660
CviQI	GTAC	1 cut(s)	944
DdeI	CTNAG	9 cut(s)	231, 242, 333, 411, 468, 711, 975, 1542, 1576
DpnI	GATC	7 cut(s)	273, 321, 548, 1110, 1382, 1760, 1793
DpnII	GATC	7 cut(s)	271, 319, 546, 1108, 1380, 1758, 1791
Eam1104I	CTCTTC	4 cut(s)	432, 663, 885, 1349
EarI	CTCTTC	4 cut(s)	432, 663, 885, 1349
Eco130I	CCWWGG	1 cut(s)	915
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	3 cut(s)	340, 364, 771
Eco57I	CTGAAG	2 cut(s)	174, 906
Eco88I	CYCGRG	1 cut(s)	1487
EcoO109I	RGGNCCY	1 cut(s)	1135
EcoT14I	CCWWGG	1 cut(s)	915
EcoT22I	ATGCAT	2 cut(s)	6, 486
ErhI	CCWWGG	1 cut(s)	915
FaeI	CATG	5 cut(s)	8, 488, 1145, 1352, 1663
FatI	CATG	5 cut(s)	4, 484, 1141, 1348, 1659
FauNDI	CATATG	2 cut(s)	825, 1444
FbaI	TGATCA	2 cut(s)	319, 546
FblI	GTMKAC	1 cut(s)	1311
Fnu4HI	GCNGC	5 cut(s)	21, 501, 1019, 1235, 1690
FokI	GGATG	4 cut(s)	202, 974, 1082, 1801
Fsp4HI	GCNGC	5 cut(s)	21, 501, 1019, 1235, 1690
FspBI	CTAG	6 cut(s)	77, 311, 368, 374, 648, 1370
FspI	TGCGCA	1 cut(s)	1146
GlaI	GCGC	2 cut(s)	1146, 1630
GluI	GCNGC	5 cut(s)	21, 501, 1019, 1235, 1690
GsuI	CTGGAG	2 cut(s)	197, 709
HaeIII	GGCC	3 cut(s)	542, 1137, 1171
HgaI	GACGC	2 cut(s)	123, 437
HhaI	GCGC	2 cut(s)	1147, 1631
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	8, 488, 1145, 1352, 1663
Hin6I	GCGC	2 cut(s)	1145, 1629
HinP1I	GCGC	2 cut(s)	1145, 1629
HincII	GTYRAC	1 cut(s)	1312
HindII	GTYRAC	1 cut(s)	1312
HindIII	AAGCTT	4 cut(s)	123, 167, 936, 1049
HinfI	GANTC	8 cut(s)	8, 33, 158, 407, 513, 1190, 1394, 1732
HphI	GGTGA	2 cut(s)	314, 1564
Hpy166II	GTNNAC	2 cut(s)	1312, 1539
Hpy188III	TCNNGA	8 cut(s)	176, 384, 434, 749, 848, 1066, 1291, 1805
Hpy8I	GTNNAC	2 cut(s)	1312, 1539
Hpy99I	CGWCG	1 cut(s)	1316
HpyAV	CCTTC	4 cut(s)	647, 986, 1358, 1576
HpyCH4III	ACNGT	5 cut(s)	302, 761, 969, 1277, 1720
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 211, 464, 728, 985, 1491, 1559
HpyF3I	CTNAG	9 cut(s)	231, 242, 333, 411, 468, 711, 975, 1542, 1576
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	5 cut(s)	8, 488, 1145, 1352, 1663
HspAI	GCGC	2 cut(s)	1145, 1629
Ksp22I	TGATCA	2 cut(s)	319, 546
Kzo9I	GATC	7 cut(s)	271, 319, 546, 1108, 1380, 1758, 1791
LmnI	GCTCC	2 cut(s)	178, 1697
Lsp1109I	GCAGC	5 cut(s)	7, 487, 1005, 1221, 1676
LweI	GCATC	5 cut(s)	180, 742, 1275, 1294, 1532
MaeI	CTAG	6 cut(s)	77, 311, 368, 374, 648, 1370
MalI	GATC	7 cut(s)	273, 321, 548, 1110, 1382, 1760, 1793
MbiI	CCGCTC	1 cut(s)	974
MboI	GATC	7 cut(s)	271, 319, 546, 1108, 1380, 1758, 1791
MfeI	CAATTG	2 cut(s)	284, 680
MflI	RGATCY	3 cut(s)	271, 1108, 1380
MhlI	GDGCHC	2 cut(s)	733, 1541
MlyI	GAGTC	4 cut(s)	27, 1199, 1403, 1741
MmeI	TCCRAC	5 cut(s)	10, 384, 490, 696, 939
Mph1103I	ATGCAT	2 cut(s)	6, 486
MroXI	GAANNNNTTC	1 cut(s)	870
MunI	CAATTG	2 cut(s)	284, 680
Mva1269I	GAATGC	2 cut(s)	791, 1475
MwoI	GCNNNNNNNGC	7 cut(s)	131, 211, 464, 728, 985, 1491, 1559
NdeI	CATATG	2 cut(s)	825, 1444
NdeII	GATC	7 cut(s)	271, 319, 546, 1108, 1380, 1758, 1791
NheI	GCTAGC	1 cut(s)	647
NlaIII	CATG	5 cut(s)	8, 488, 1145, 1352, 1663
NlaIV	GGNNCC	1 cut(s)	1638
NmeAIII	GCCGAG	1 cut(s)	1156
NsbI	TGCGCA	1 cut(s)	1146
NsiI	ATGCAT	2 cut(s)	6, 486
PaeR7I	CTCGAG	1 cut(s)	1487
PctI	GAATGC	2 cut(s)	791, 1475
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	4 cut(s)	8, 158, 407, 513
PkrI	GCNGC	5 cut(s)	22, 502, 1020, 1236, 1691
PleI	GAGTC	4 cut(s)	27, 1198, 1402, 1740
PpsI	GAGTC	4 cut(s)	27, 1198, 1402, 1740
PshBI	ATTAAT	1 cut(s)	1478
PspN4I	GGNNCC	1 cut(s)	1638
PspPI	GGNCC	4 cut(s)	340, 364, 771, 1135
PspXI	VCTCGAGB	1 cut(s)	1487
PsuI	RGATCY	3 cut(s)	271, 1108, 1380
RsaI	GTAC	1 cut(s)	945
RsaNI	GTAC	1 cut(s)	944
SalI	GTCGAC	1 cut(s)	1310
SatI	GCNGC	5 cut(s)	21, 501, 1019, 1235, 1690
Sau3AI	GATC	7 cut(s)	271, 319, 546, 1108, 1380, 1758, 1791
Sau96I	GGNCC	4 cut(s)	340, 364, 771, 1135
ScaI	AGTACT	1 cut(s)	945
SchI	GAGTC	4 cut(s)	27, 1199, 1403, 1741
SduI	GDGCHC	2 cut(s)	733, 1541
SfaNI	GCATC	5 cut(s)	180, 742, 1275, 1294, 1532
Sfr274I	CTCGAG	1 cut(s)	1487
SinI	GGWCC	3 cut(s)	340, 364, 771
SlaI	CTCGAG	1 cut(s)	1487
SmlI	CTYRAG	3 cut(s)	779, 848, 1487
SmoI	CTYRAG	3 cut(s)	779, 848, 1487
SsiI	CCGC	2 cut(s)	101, 972
SspI	AATATT	2 cut(s)	1700, 1714
SspMI	CTAG	6 cut(s)	77, 311, 368, 374, 648, 1370
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	5 cut(s)	302, 761, 969, 1277, 1720
TaqI	TCGA	3 cut(s)	1311, 1488, 1794
TaqII	GACCGA	2 cut(s)	383, 788
TatI	WGTACW	1 cut(s)	943
TfiI	GAWTC	4 cut(s)	8, 158, 407, 513
TscAI	CASTG	4 cut(s)	733, 766, 1282, 1546
TseI	GCWGC	5 cut(s)	20, 500, 1018, 1234, 1689
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	4 cut(s)	733, 766, 1282, 1546
VneI	GTGCAC	1 cut(s)	1537
VpaK11BI	GGWCC	3 cut(s)	340, 364, 771
VspI	ATTAAT	1 cut(s)	1478
XapI	RAATTY	3 cut(s)	488, 597, 1079
XcmI	CCANNNNNNNNNTGG	2 cut(s)	172, 922
XhoI	CTCGAG	1 cut(s)	1487
XmiI	GTMKAC	1 cut(s)	1311
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	6 cut(s)	77, 311, 368, 374, 648, 1370
ZrmI	AGTACT	1 cut(s)	945
Zsp2I	ATGCAT	2 cut(s)	6, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.