Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003440

Physical Location & Seq

Genomic Coordinates Forward (+)

14593341 .. 14594485

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15120.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAGCATTTGGTTCTTGCCAATGAGAATTTTAAGGCCCAAGGCTTAAAGTCTAGCATGGAAAACTTAAATAAGGAGTTGGAAAGGATGAAACATGAAAATTTGCTTCTTTCCGTCGATGATCAACACCTTGAACCAAATTTTCCTGGTTTACAAAGAGAGATTATGCAATTAAATAAGGTAAATGAAGAATTGGGAAATATATTTCCCTCCTTCAACGAGTTTTCTTGCAGTGGCAATGCATTAGAGAGGGTGCTAGCTTTGGAAGTTGAACTCGCTGAAGCATTGCAGGCAAAGAAGAAATCAACTATCCAGTTTCAAAGTTCTTTCGTGAAACAACACAGCGACGAGGAAGCAGTGTTTCACAGCTTCAGAGACATCAACGAGCTAATTAAAGACATGCTGGAGATTAAGGGAAGATATGCTACCGTGGAAACGGAACTCAAAGACATGCATGACCGTTACTCCCAGTTAAGCCTTCAGTTTGCAGAGGTCGAAGGGGAGAGACAAAAACTAATGATGACTCTCAAGAATGTCCGAGCGTCAAAGAAAGCCCTATACTCGAATCGCTCCTCAACATCCCCTTTTCTAGACCCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

201

Amino Acids

23.04

Weight (kDa)

5.75

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22060 AT1G22060
fragaria_vesca	FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230 FvH4_5g38230
malus_domestica	MD08G1176200.v1.1 MD15G1361900.v1.1
prunus_persica	Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1 Prupe.1G510000_v2.0.a1
pyrus_communis	pycom08g15080 pycom08g15090 pycom08g15100 pycom08g15110 pycom08g15120 pycom15g32460
rosa_chinensis	RchiOBHm_Chr7g0240181
rosa_laevigata	RLG00000000692
rosa_multiflora	Rmu_sc0005008.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220340
rosa_rugosa	Rorug07G0334100 Rorug07G0334100 Rorug07G0334200
rosa_samantha	Rh7AG487700 Rh7BG461000 Rh7CG504300 Rh7DG472500
rosa_wichuraiana	Rw7G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	28, 100, 139
AcuI	CTGAAG	3 cut(s)	300, 355, 464
AgsI	TTSAA	4 cut(s)	134, 217, 272, 320
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	3 cut(s)	260, 369, 388
AluI	AGCT	3 cut(s)	260, 369, 388
Alw26I	GTCTC	2 cut(s)	369, 499
AoxI	GGCC	1 cut(s)	36
ApoI	RAATTY	3 cut(s)	28, 100, 139
AspS9I	GGNCC	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	409, 441
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	369, 499
BfaI	CTAG	3 cut(s)	54, 257, 590
Bme1390I	CCNGG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	147
BmrI	ACTGGG	1 cut(s)	463
BmtI	GCTAGC	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	40, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bse1I	ACTGG	2 cut(s)	313, 469
Bse3DI	GCAATG	2 cut(s)	244, 284
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	40, 429
BseGI	GGATG	2 cut(s)	93, 578
BseMI	GCAATG	2 cut(s)	244, 284
BseNI	ACTGG	2 cut(s)	313, 469
BseRI	GAGGAG	1 cut(s)	562
BshFI	GGCC	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	369, 499
BsnI	GGCC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	38
BspOI	GCTAGC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	244, 284
BsrI	ACTGG	2 cut(s)	313, 469
BssECI	CCNNGG	2 cut(s)	40, 429
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	430, 461
BstC8I	GCNNGC	2 cut(s)	258, 291
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	93, 578
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	2 cut(s)	369, 499
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	2 cut(s)	403, 454
BstSCI	CCNGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	93, 578
BtsI	GCAGTG	2 cut(s)	238, 363
BtsIMutI	CAGTG	2 cut(s)	238, 363
Cac8I	GCNNGC	2 cut(s)	258, 291
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	531
CviAII	CATG	5 cut(s)	58, 95, 400, 451, 455
CviJI	RGCY	7 cut(s)	38, 45, 260, 369, 388, 477, 554
CviKI_1	RGCY	7 cut(s)	38, 45, 260, 369, 388, 477, 554
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	300, 355, 464
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	2 cut(s)	244, 456
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	5 cut(s)	61, 98, 403, 454, 458
FaiI	YATR	9 cut(s)	59, 96, 167, 203, 401, 423, 452, 456, 559
FatI	CATG	5 cut(s)	57, 94, 399, 450, 454
FbaI	TGATCA	1 cut(s)	121
FokI	GGATG	2 cut(s)	100, 565
FspBI	CTAG	3 cut(s)	54, 257, 590
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	38
HgaI	GACGC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	61, 98, 403, 454, 458
HinfI	GANTC	2 cut(s)	523, 565
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	374, 539
Hpy188III	TCNNGA	3 cut(s)	331, 529, 590
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	2 cut(s)	119, 350
HpyAV	CCTTC	3 cut(s)	223, 488, 491
HpyCH4III	ACNGT	2 cut(s)	430, 461
HpyCH4V	TGCA	6 cut(s)	169, 231, 242, 289, 454, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
Hsp92II	CATG	5 cut(s)	61, 98, 403, 454, 458
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	575
LpnPI	CCDG	6 cut(s)	132, 159, 275, 326, 389, 482
MaeI	CTAG	3 cut(s)	54, 257, 590
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	200, 310, 429
MluCI	AATT	6 cut(s)	28, 100, 139, 170, 191, 390
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	220, 243, 343, 484, 583
Mph1103I	ATGCAT	2 cut(s)	244, 456
MseI	TTAA	7 cut(s)	33, 47, 68, 173, 393, 411, 473
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	121
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	5 cut(s)	61, 98, 403, 454, 458
NsiI	ATGCAT	2 cut(s)	244, 456
NspI	RCATGY	2 cut(s)	403, 454
PfeI	GAWTC	1 cut(s)	565
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	37
SaqAI	TTAA	7 cut(s)	33, 47, 68, 173, 393, 411, 473
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	6 cut(s)	132, 183, 262, 371, 390, 495
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	6 cut(s)	28, 100, 139, 170, 191, 390
SspMI	CTAG	3 cut(s)	54, 257, 590
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	430, 461
TaqI	TCGA	3 cut(s)	117, 495, 563
TasI	AATT	6 cut(s)	28, 100, 139, 170, 191, 390
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	7 cut(s)	33, 47, 68, 173, 393, 411, 473
Tru9I	TTAA	7 cut(s)	33, 47, 68, 173, 393, 411, 473
TscAI	CASTG	2 cut(s)	238, 363
TspDTI	ATGAA	4 cut(s)	17, 104, 111, 201
TspGWI	ACGGA	2 cut(s)	103, 452
TspRI	CASTG	2 cut(s)	238, 363
XapI	RAATTY	3 cut(s)	28, 100, 139
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	2 cut(s)	403, 454
XspI	CTAG	3 cut(s)	54, 257, 590
Zsp2I	ATGCAT	2 cut(s)	244, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.