Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003067

Physical Location & Seq

Genomic Coordinates Reverse (-)

15573655 .. 15579022

Gene Structure 5368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3489 bp

ATGCGTACACAAACGCAACTGACACACGTGTCGGTACGAAGTCGGGTTCCCATAGAAGTCAAACAATACTGCGCGCCAGTCAATCAGAAGTCGGATACCGAAACGCCTCGTCGTTTAACATCCACCCTCGTCTACTTTTCGTTTCTTCTTCTCCGCCCAAATCTCTCTTTCTTCCTCTCACAGTTCAATGCCATGGCCTTCCCGCCCGCCGTCGACCACCACAGCCCTAACCCTAACCACCTCCACCTTGAATCCCTCCCTCTCATTGACCTCGGCCTCCTCTCTCAATCAGACCTCTACTCTCTCTCCCTCATCTCCTCCTCCTCCCAATCCCACCCCACCCGCCGCTTCGACGATGACGTATTGATCCCCAAAATCGACCGTTCCGTCTTCAATGAATCCGCCGGCAGCCGCAAGCAGACCTACTCCCGCCTCCGCCTCGCTCCTCGCAACTCCCAATTCCCAATCCCAAACCCCAAATCGCAGAAAACGATTCCCCATTTCCACCCCCAAGACTCCGAAACCCTCCAGATTATCGCTCTCTTGAAACAGCTTTTTCCCTCAGAAAAAGCCCCAAACGAAAATGACGGCGTACTCGTCCCTGTCCCCGTCCGCCTCGTCCAATATGACGCCACGCCCGGCCCCTTCGTGGAAAACTTCCCGGCTGGACTCTCCATCGATATCAGTACGAAGAGGAAGAGAGGCCGCCCGCGTAAGGATCACAATGCCATTATATCTTACCCGAGCCTCAACGCTGATGTTTCGATGAAGATGCGTGGCGGTGACAATACGCCGCCCGGGATTGTTGTTCAGAGCAGTGAGGGCAGCCGGAAGCGAGGCCGGCCGCGGAAAGATGAGAACAGAGTGGTTTCGGTGGCTAAGCGTGAGAAGAAAGTGACGGTCAAGGAAGGGAAAGTGAAGGTGGAGGAGGCTGAGATGGTGATGGTGAACGGAAATGGAGTTGTTGTGGACTTGGCTGCGGTAGAGAATGCGGACGGTTTGTTTGGGGAGGAGTTGAGAAGGAGGACGGAGGGGATGGAGACCCAGGCGCAGTTGTTAGGGTTTCTGGGAGGGTTGGACGGGCAGTGGTCGAGCGCTAGGAAGAAGAGGAAGATTGTGCCTGCGGGTGAGCTTGGTGACGTGTTGCCGATGCATTGGAAGATTTTGCTATCTCTCAAGAGGAATGGAGGGCTAGTTCGACTCTTCTGTAAACGATACATAAGCCCTAATGGGCAGCAGTTTGTGTCGTGCAAGGAAGTTAATTCGTACTCGATCTCTTATTTTGGAGTTGGAAACAAGTCAATTCCTGGTCATACTGGTGGCAGTATTCAGCTTTCTAATAAAATGGTTTCTGGAGATGATACAAATCTTACCTTTGAAGATGAGAGCAAGGTTAATGAGCTTGCTAGCCACTCGCTAATGCCTGTTACTTCAGTATCACCTGGTCATGAGAAACAAGAAAACTTCTTTCGTACAGAAAATTTACAGGAATTTCAAGCAGGAGAAGAAATGGGCATGACTAAGAAGGTTGACCCGATAAAGACTGGTATTCTGCAGACATCTTTGAAGATTTATGAGTCAGGTCAAATAGACAGGGAAGCATCTTCTGATGCAGTAGCCAAATATGAATCGAGTGCTGGTTTTCCTTGTGGTAAAGTGAACAATGATATCACAGATTGTTTTGGATCGAACAATAGTGAATCAAATTCATTGTCTTGTGAGGATCAAGCTTTGAAGAATAATAAAATTGGTAAGGATTTGGGATTTTCTGAGCAGGGTAGTGCAGTTATTATGACAAATGATAAGTTGGTGGATGAGCCTACTGGTCCTGGTCTCAGCTTTGCTGAAACAAATATTTTGGACTGCTTTCATGATGGAATAAATGATGGTTTTAAGGCTTCTGTGAGTTCAGTTGATTTGCCCAATGTAGACACTGATACTGCTTTAAATGGTACACAAAAAGAACGGAGGTCTGAGAATATTGATAACAACCAATTAACTAGCACAGAAGAAAATACAAAATTTGATGATGTGGATGATCGTGGGAATGGCAGGTCAATATCTGGTATTAGTGAGAGTTGCATTGGACCCCAGAATGTTTGTACTAATGTCGTGCAGCAAAGTACTTCTGAAGCCTGCTCGCTTCTTCCTTCAACTATCATACAGTCTCTACAGAAAAGAGGCTCTGAAAGAGGTTTATGTAGTACTACTGTTGAGAAAACATGTGATGTCAGGGATGATTACAATAGTGAGTCACTCTACACATCTTATGGACCCAAGTTTGATAATATTGATCTATCTGGGAATGACGACAAGGCAATCAGTTTAAGCAGCGACCATGCCATGCCGAATGTGGGTGCAGTGGAAATCAATGAGCATGTTAGAAGTACTGGGAGCTGTTCAAGCGGTCCAGGTCTGGATGGACACAGTTGTATCGCATTAAGTAATGCAAAGAATCCTAGTTGCATAGTGGAGGAACTCTGGCAGGAAAAGAGTTTTCAAAGCAATGTGTCTGTTCCATTTGTTAAACCGGGCAGGGGTTCTTCTGAAACCGGTATGATTTACCCCTCTGGCTATGCACGCAATGTGAATAGCACAAACTCAAGCTCAATGGAAGAATCAAAACATGAGGATTCTAAAAGGTCTTGGAATAACGAGGTAATGCTTTCTTTTAGCAGCAGTTACGCTGGATCAGTTGCCAATTCTATGACAAACACTCTGCATGAAAGGAGTTCTGGAGGACCTTCCCTTGTTCATTCAGGGAATAGTCAAACATTTTCCACTGGAAATAAATTAACTGGCATTTTCAGTAGCTCAGTATCGGATGATAAACTCAGTAGAGGTTCTGTTGATGGTTCAATACATCCAAATGGTGAAGAACAAATCCCTGGGATAGAACATAATATAAACAGGGTTTATGGCAGCATAATGTGGGAGCAGCCTAACACTGAGAATGCAGAAAAGTCCAGGAACAATGAGCCCCTAAATCATTCCCAACCTTCTGGGGATGTCATGGCTGAATTTATGTGGAGAAGTGATGAGCAAAATGTTCAGCAGAGTGGACTGGTTGATACACCATTTGAACTCATGCAATCATCTGGCTACTATCCGAACAGTGGTCTGTTGTCTGACAAGGGTGCAAATGGAGCTTTAAGTGTAAATGAAAAGCGTGACAACGTGTCAGGTTTGGAAGGATTGAAACTGGGTCAGTTTGATTACAATTTCCCAAAAGTGCAAGCAACCTCACGTACAAAGGAATCGAAAGTGTTGTCAGATGATGGAGAGATGGAACAAGGTTTCAGTTCATCGGATTGGCTTGAAAAGGAATCTTTGCCCTCAATGCCAAATAACGCAAGCAGGTATGAGATTAACACCTGTGTCTGGTGCAGAAATGAGTTTCATCATGAGGTTTGTGAACGGACACAACCTGGTTCTGTCGGTTTGATGTGTGCAACCTGCCAGGCCAATTTCTCAGGCAATTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook MBD

Protein Analysis

1163

Amino Acids

127.31

Weight (kDa)

5.55

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120
malus_domestica	MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1
prunus_persica	Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1
pyrus_communis	pycom08g15800
rosa_chinensis	RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961
rosa_laevigata	RLG00000000820
rosa_multiflora	Rmu_sc0006110.1_g000008
rosa_roxburghii	Rroxscaffold_3G00221630
rosa_rugosa	Rorug07G0322800
rosa_samantha	Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200
rosa_wichuraiana	Rw7G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	28, 386
Acc36I	ACCTGC	3 cut(s)	2043, 3348, 3464
AccI	GTMKAC	3 cut(s)	132, 213, 1929
AccII	CGCG	3 cut(s)	74, 712, 847
AclWI	GGATC	5 cut(s)	361, 726, 1693, 1731, 2698
AcoI	YGGCCR	1 cut(s)	842
AcsI	RAATTY	5 cut(s)	1480, 1490, 1705, 2021, 3020
AcuI	CTGAAG	2 cut(s)	1416, 2151
AcvI	CACGTG	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	630
AfeI	AGCGCT	1 cut(s)	1096
AfiI	CCNNNNNNNGG	6 cut(s)	649, 715, 2354, 2537, 3116, 3381
AflIII	ACRYGT	5 cut(s)	25, 27, 1140, 2222, 3177
AgeI	ACCGGT	1 cut(s)	2552
AhdI	GACNNNNNGTC	1 cut(s)	3178
AjiI	CACGTC	1 cut(s)	1141
AjnI	CCWGG	9 cut(s)	1044, 1306, 1441, 1828, 2410, 2887, 2966, 3427, 3459
AloI	GAACNNNNNNTCC	2 cut(s)	1179, 1211
Alw26I	GTCTC	3 cut(s)	1034, 1838, 2172
AlwI	GGATC	5 cut(s)	361, 726, 1693, 1731, 2698
Ama87I	CYCGRG	2 cut(s)	742, 797
Aor51HI	AGCGCT	1 cut(s)	1096
AoxI	GGCC	7 cut(s)	195, 274, 640, 703, 838, 842, 3462
ApeKI	GCWGC	9 cut(s)	408, 825, 977, 1234, 2116, 2331, 2676, 2922, 2938
ApoI	RAATTY	5 cut(s)	1480, 1490, 1705, 2021, 3020
ArsI	GACNNNNNNTTYG	6 cut(s)	986, 1018, 1697, 1729, 3254, 3286
AsiGI	ACCGGT	1 cut(s)	2552
AspLEI	GCGC	4 cut(s)	74, 76, 1051, 1097
AspS9I	GGNCC	6 cut(s)	641, 1826, 2087, 2273, 2408, 2741
AsuC2I	CCSGG	5 cut(s)	639, 662, 798, 799, 2532
AsuHPI	GGTGA	7 cut(s)	794, 952, 958, 1139, 1148, 1431, 2885
AsuNHI	GCTAGC	1 cut(s)	1406
AvaI	CYCGRG	2 cut(s)	742, 797
AvaII	GGWCC	5 cut(s)	1826, 2087, 2273, 2408, 2741
BaeI	ACNNNNGTAYC	4 cut(s)	1419, 1452, 2416, 2449
BanII	GRGCYC	1 cut(s)	2982
BbrPI	CACGTG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	382
BbvI	GCAGC	9 cut(s)	420, 837, 964, 1246, 2128, 2343, 2688, 2934, 2950
BceAI	ACGGC	2 cut(s)	194, 604
BcgI	CGANNNNNNTGC	2 cut(s)	754, 788
BciT130I	CCWGG	9 cut(s)	1046, 1308, 1443, 1830, 2412, 2889, 2968, 3429, 3461
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	5 cut(s)	639, 662, 798, 799, 2532
BcoDI	GTCTC	3 cut(s)	1034, 1838, 2172
BfaI	CTAG	5 cut(s)	1098, 1193, 1407, 2001, 2460
BfmI	CTRYAG	2 cut(s)	1553, 2171
BfoI	RGCGCY	1 cut(s)	1098
BfuAI	ACCTGC	3 cut(s)	2043, 3348, 3464
BfuI	GTATCC	1 cut(s)	88
BlpI	GCTNAGC	1 cut(s)	879
BmcAI	AGTACT	3 cut(s)	2125, 2206, 2389
Bme18I	GGWCC	5 cut(s)	1826, 2087, 2273, 2408, 2741
BmeRI	GACNNNNNGTC	1 cut(s)	3178
BmeT110I	CYCGRG	2 cut(s)	742, 797
BmgBI	CACGTC	1 cut(s)	1141
BmgT120I	GGNCC	6 cut(s)	641, 1826, 2087, 2273, 2408, 2741
BmiI	GGNNCC	4 cut(s)	48, 643, 2089, 2275
BmrI	ACTGGG	2 cut(s)	2400, 3212
BmsI	GCATC	4 cut(s)	762, 1140, 1600, 1610
BmtI	GCTAGC	1 cut(s)	1410
BmuI	ACTGGG	2 cut(s)	2400, 3212
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	3 cut(s)	512, 1374, 2757
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	2 cut(s)	1160, 2587
BpuMI	CCSGG	5 cut(s)	639, 662, 798, 799, 2532
Bsa29I	ATCGAT	1 cut(s)	678
BsaAI	YACGTR	2 cut(s)	28, 3248
BsaBI	GATNNNNATC	1 cut(s)	1365
BsaHI	GRCGYC	1 cut(s)	630
BsaI	GGTCTC	2 cut(s)	1034, 1838
BsaJI	CCNNGG	7 cut(s)	192, 271, 797, 845, 1044, 2887, 2888
BsaWI	WCCGGW	1 cut(s)	2552
BsaXI	ACNNNNNCTCC	6 cut(s)	290, 320, 951, 981, 1179, 1209
Bsc4I	CCNNNNNNNGG	6 cut(s)	649, 715, 2354, 2537, 3116, 3381
Bse118I	RCCGGY	3 cut(s)	404, 840, 2552
Bse1I	ACTGG	9 cut(s)	77, 1321, 1549, 1828, 2395, 2788, 2803, 3069, 3207
Bse3DI	GCAATG	2 cut(s)	2512, 2590
Bse8I	GATNNNNATC	1 cut(s)	1365
BseBI	CCWGG	9 cut(s)	1046, 1308, 1443, 1830, 2412, 2889, 2968, 3429, 3461
BseCI	ATCGAT	1 cut(s)	678
BseDI	CCNNGG	7 cut(s)	192, 271, 797, 845, 1044, 2887, 2888
BseGI	GGATG	9 cut(s)	119, 1041, 1819, 2041, 2242, 2425, 2830, 2863, 3013
BseJI	GATNNNNATC	1 cut(s)	1365
BseLI	CCNNNNNNNGG	6 cut(s)	649, 715, 2354, 2537, 3116, 3381
BseMI	GCAATG	2 cut(s)	2512, 2590
BseMII	CTCAG	9 cut(s)	576, 924, 1761, 1849, 1965, 2829, 2848, 2940, 3486
BseNI	ACTGG	9 cut(s)	77, 1321, 1549, 1828, 2395, 2788, 2803, 3069, 3207
BsePI	GCGCGC	1 cut(s)	72
BseRI	GAGGAG	7 cut(s)	269, 307, 310, 313, 435, 941, 1025
BseX3I	CGGCCG	1 cut(s)	842
BseXI	GCAGC	9 cut(s)	420, 837, 964, 1246, 2128, 2343, 2688, 2934, 2950
BsgI	GTGCAG	4 cut(s)	1803, 2135, 2379, 3406
Bsh1236I	CGCG	3 cut(s)	74, 712, 847
Bsh1285I	CGRYCG	2 cut(s)	382, 845
BshFI	GGCC	7 cut(s)	197, 276, 642, 705, 840, 844, 3464
BshTI	ACCGGT	1 cut(s)	2552
BshVI	ATCGAT	1 cut(s)	678
BsiEI	CGRYCG	2 cut(s)	382, 845
BsiHKCI	CYCGRG	2 cut(s)	742, 797
BsiSI	CCGG	8 cut(s)	405, 639, 662, 798, 829, 841, 2531, 2553
BslFI	GGGAC	2 cut(s)	584, 590
BslI	CCNNNNNNNGG	6 cut(s)	649, 715, 2354, 2537, 3116, 3381
BsmAI	GTCTC	3 cut(s)	1034, 1838, 2172
BsmFI	GGGAC	2 cut(s)	584, 590
BsmI	GAATGC	2 cut(s)	994, 2959
BsnI	GGCC	7 cut(s)	197, 276, 642, 705, 840, 844, 3464
Bso31I	GGTCTC	2 cut(s)	1034, 1838
BsoBI	CYCGRG	2 cut(s)	742, 797
Bsp1286I	GDGCHC	1 cut(s)	2982
Bsp143I	GATC	8 cut(s)	366, 718, 1272, 1685, 1723, 2038, 2293, 2690
Bsp1720I	GCTNAGC	1 cut(s)	879
Bsp19I	CCATGG	1 cut(s)	192
BspANI	GGCC	7 cut(s)	197, 276, 642, 705, 840, 844, 3464
BspCNI	CTCAG	9 cut(s)	575, 925, 1762, 1848, 1966, 2828, 2847, 2941, 3485
BspDI	ATCGAT	1 cut(s)	678
BspFNI	CGCG	3 cut(s)	74, 712, 847
BspHI	TCATGA	3 cut(s)	1447, 1870, 3403
BspLI	GGNNCC	4 cut(s)	48, 643, 2089, 2275
BspMAI	CTGCAG	1 cut(s)	1557
BspMI	ACCTGC	3 cut(s)	2043, 3348, 3464
BspOI	GCTAGC	1 cut(s)	1410
BspPI	GGATC	5 cut(s)	361, 726, 1693, 1731, 2698
BspTNI	GGTCTC	2 cut(s)	1034, 1838
BsrDI	GCAATG	2 cut(s)	2512, 2590
BsrFI	RCCGGY	3 cut(s)	404, 840, 2552
BsrI	ACTGG	9 cut(s)	77, 1321, 1549, 1828, 2395, 2788, 2803, 3069, 3207
BssAI	RCCGGY	3 cut(s)	404, 840, 2552
BssECI	CCNNGG	7 cut(s)	192, 271, 797, 845, 1044, 2887, 2888
BssHII	GCGCGC	1 cut(s)	72
BssMI	GATC	8 cut(s)	366, 718, 1272, 1685, 1723, 2038, 2293, 2690
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	9 cut(s)	1046, 1308, 1443, 1830, 2412, 2889, 2968, 3429, 3461
Bst4CI	ACNGT	8 cut(s)	183, 383, 901, 998, 2166, 2212, 2429, 3116
Bst6I	CTCTTC	4 cut(s)	686, 692, 1100, 1208
BstACI	GRCGYC	1 cut(s)	630
BstBAI	YACGTR	2 cut(s)	28, 3248
BstDSI	CCRYGG	2 cut(s)	192, 845
BstF5I	GGATG	9 cut(s)	119, 1041, 1819, 2041, 2242, 2425, 2830, 2863, 3013
BstFNI	CGCG	3 cut(s)	74, 712, 847
BstH2I	RGCGCY	1 cut(s)	1098
BstHHI	GCGC	4 cut(s)	74, 76, 1051, 1097
BstKTI	GATC	8 cut(s)	369, 721, 1275, 1688, 1726, 2041, 2296, 2693
BstMAI	GTCTC	3 cut(s)	1034, 1838, 2172
BstMBI	GATC	8 cut(s)	366, 718, 1272, 1685, 1723, 2038, 2293, 2690
BstMCI	CGRYCG	2 cut(s)	382, 845
BstMWI	GCNNNNNNNGC	6 cut(s)	822, 841, 2403, 2580, 3146, 3340
BstNI	CCWGG	9 cut(s)	1046, 1308, 1443, 1830, 2412, 2889, 2968, 3429, 3461
BstNSI	RCATGY	2 cut(s)	2226, 2381
BstSFI	CTRYAG	2 cut(s)	1553, 2171
BstUI	CGCG	3 cut(s)	74, 712, 847
BstV1I	GCAGC	9 cut(s)	420, 837, 964, 1246, 2128, 2343, 2688, 2934, 2950
BstV2I	GAAGAC	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	3002
BstZI	CGGCCG	1 cut(s)	842
Bsu15I	ATCGAT	1 cut(s)	678
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	7 cut(s)	197, 276, 642, 705, 840, 844, 3464
BsuTUI	ATCGAT	1 cut(s)	678
BtgI	CCRYGG	2 cut(s)	192, 845
BtrI	CACGTC	1 cut(s)	1141
BtsCI	GGATG	9 cut(s)	119, 1041, 1819, 2041, 2242, 2425, 2830, 2863, 3013
BtsI	GCAGTG	3 cut(s)	823, 1091, 2367
BtsIMutI	CAGTG	7 cut(s)	823, 1091, 1932, 2367, 2781, 2946, 3121
BveI	ACCTGC	3 cut(s)	2043, 3348, 3464
CciI	TCATGA	3 cut(s)	1447, 1870, 3403
CfoI	GCGC	4 cut(s)	74, 76, 1051, 1097
Cfr10I	RCCGGY	3 cut(s)	404, 840, 2552
Cfr13I	GGNCC	6 cut(s)	641, 1826, 2087, 2273, 2408, 2741
Cfr42I	CCGCGG	1 cut(s)	848
Cfr9I	CCCGGG	1 cut(s)	797
ClaI	ATCGAT	1 cut(s)	678
CseI	GACGC	1 cut(s)	638
CsiI	ACCWGGT	2 cut(s)	1441, 3427
CspAI	ACCGGT	1 cut(s)	2552
DpnI	GATC	8 cut(s)	368, 720, 1274, 1687, 1725, 2040, 2295, 2692
DpnII	GATC	8 cut(s)	366, 718, 1272, 1685, 1723, 2038, 2293, 2690
DraI	TTTAAA	1 cut(s)	1947
DrdI	GACNNNNNNGTC	2 cut(s)	28, 386
DriI	GACNNNNNGTC	1 cut(s)	3178
DseDI	GACNNNNNNGTC	2 cut(s)	28, 386
EaeI	YGGCCR	1 cut(s)	842
EagI	CGGCCG	1 cut(s)	842
Eam1104I	CTCTTC	4 cut(s)	686, 692, 1100, 1208
Eam1105I	GACNNNNNGTC	1 cut(s)	3178
EarI	CTCTTC	4 cut(s)	686, 692, 1100, 1208
EciI	GGCGGA	4 cut(s)	143, 391, 425, 602
EclXI	CGGCCG	1 cut(s)	842
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	2982
Eco31I	GGTCTC	2 cut(s)	1034, 1838
Eco32I	GATATC	2 cut(s)	682, 1669
Eco47I	GGWCC	5 cut(s)	1826, 2087, 2273, 2408, 2741
Eco47III	AGCGCT	1 cut(s)	1096
Eco52I	CGGCCG	1 cut(s)	842
Eco57I	CTGAAG	2 cut(s)	1416, 2151
Eco72I	CACGTG	1 cut(s)	28
Eco88I	CYCGRG	2 cut(s)	742, 797
EcoO109I	RGGNCCY	1 cut(s)	2741
EcoRII	CCWGG	9 cut(s)	1044, 1306, 1441, 1828, 2410, 2887, 2966, 3427, 3459
EcoRV	GATATC	2 cut(s)	682, 1669
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	1155
EcoT38I	GRGCYC	1 cut(s)	2982
ErhI	CCWWGG	1 cut(s)	192
FaqI	GGGAC	2 cut(s)	584, 590
FauI	CCCGC	6 cut(s)	210, 214, 350, 437, 717, 1117
FblI	GTMKAC	3 cut(s)	132, 213, 1929
FokI	GGATG	9 cut(s)	106, 1048, 1826, 2048, 2249, 2432, 2837, 2850, 3020
FriOI	GRGCYC	1 cut(s)	2982
FseI	GGCCGGCC	1 cut(s)	844
FspBI	CTAG	5 cut(s)	1098, 1193, 1407, 2001, 2460
GlaI	GCGC	4 cut(s)	73, 75, 1050, 1096
GsuI	CTGGAG	3 cut(s)	512, 1374, 2757
HaeII	RGCGCY	1 cut(s)	1098
HaeIII	GGCC	7 cut(s)	197, 276, 642, 705, 840, 844, 3464
HapII	CCGG	8 cut(s)	405, 639, 662, 798, 829, 841, 2531, 2553
HgaI	GACGC	1 cut(s)	638
HhaI	GCGC	4 cut(s)	74, 76, 1051, 1097
Hin1I	GRCGYC	1 cut(s)	630
Hin6I	GCGC	4 cut(s)	72, 74, 1049, 1095
HinP1I	GCGC	4 cut(s)	72, 74, 1049, 1095
HincII	GTYRAC	2 cut(s)	214, 1531
HindII	GTYRAC	2 cut(s)	214, 1531
HindIII	AAGCTT	1 cut(s)	1728
HpaII	CCGG	8 cut(s)	405, 639, 662, 798, 829, 841, 2531, 2553
HphI	GGTGA	7 cut(s)	794, 952, 958, 1139, 1148, 1431, 2885
Hpy188III	TCNNGA	9 cut(s)	529, 544, 1177, 1353, 1448, 1871, 2417, 2736, 3404
Hpy99I	CGWCG	3 cut(s)	114, 215, 356
HpyCH4III	ACNGT	8 cut(s)	183, 383, 901, 998, 2166, 2212, 2429, 3116
HpyCH4IV	ACGT	5 cut(s)	27, 360, 1140, 3177, 3247
HpyF10VI	GCNNNNNNNGC	6 cut(s)	822, 841, 2403, 2580, 3146, 3340
HpySE526I	ACGT	5 cut(s)	27, 360, 1140, 3177, 3247
Hsp92I	GRCGYC	1 cut(s)	630
HspAI	GCGC	4 cut(s)	72, 74, 1049, 1095
KroI	GCCGGC	2 cut(s)	404, 840
KroNI	GCCGGC	2 cut(s)	406, 842
KspI	CCGCGG	1 cut(s)	848
Kzo9I	GATC	8 cut(s)	366, 718, 1272, 1685, 1723, 2038, 2293, 2690
LmnI	GCTCC	4 cut(s)	448, 2394, 2935, 3146
Lsp1109I	GCAGC	9 cut(s)	420, 837, 964, 1246, 2128, 2343, 2688, 2934, 2950
LweI	GCATC	4 cut(s)	762, 1140, 1600, 1610
MabI	ACCWGGT	2 cut(s)	1441, 3427
MaeI	CTAG	5 cut(s)	1098, 1193, 1407, 2001, 2460
MaeII	ACGT	5 cut(s)	27, 360, 1140, 3177, 3247
MaeIII	GTNAC	7 cut(s)	782, 895, 1136, 1426, 2253, 2681, 3170
MalI	GATC	8 cut(s)	368, 720, 1274, 1687, 1725, 2040, 2295, 2692
MboI	GATC	8 cut(s)	366, 718, 1272, 1685, 1723, 2038, 2293, 2690
MhlI	GDGCHC	1 cut(s)	2982
MlyI	GAGTC	5 cut(s)	509, 663, 1194, 1586, 2261
MmeI	TCCRAC	3 cut(s)	72, 1056, 1270
Mph1103I	ATGCAT	1 cut(s)	1155
MroNI	GCCGGC	2 cut(s)	404, 840
MslI	CAYNNNNRTG	2 cut(s)	1317, 2868
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	8 cut(s)	405, 639, 662, 798, 829, 841, 2531, 2553
Mva1269I	GAATGC	2 cut(s)	994, 2959
MvaI	CCWGG	9 cut(s)	1046, 1308, 1443, 1830, 2412, 2889, 2968, 3429, 3461
MvnI	CGCG	3 cut(s)	74, 712, 847
MwoI	GCNNNNNNNGC	6 cut(s)	822, 841, 2403, 2580, 3146, 3340
NaeI	GCCGGC	2 cut(s)	406, 842
NciI	CCSGG	5 cut(s)	639, 662, 798, 799, 2532
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	8 cut(s)	366, 718, 1272, 1685, 1723, 2038, 2293, 2690
NgoMIV	GCCGGC	2 cut(s)	404, 840
NheI	GCTAGC	1 cut(s)	1406
NlaIV	GGNNCC	4 cut(s)	48, 643, 2089, 2275
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	5 cut(s)	782, 895, 1136, 2253, 3170
NsiI	ATGCAT	1 cut(s)	1155
NspI	RCATGY	2 cut(s)	2226, 2381
PagI	TCATGA	3 cut(s)	1447, 1870, 3403
PasI	CCCWGGG	1 cut(s)	2888
PauI	GCGCGC	1 cut(s)	72
PciI	ACATGT	1 cut(s)	2222
PcsI	WCGNNNNNNNCGW	4 cut(s)	357, 384, 488, 594
PctI	GAATGC	2 cut(s)	994, 2959
PdiI	GCCGGC	2 cut(s)	406, 842
PfoI	TCCNGGA	1 cut(s)	2966
PinAI	ACCGGT	1 cut(s)	2552
PleI	GAGTC	5 cut(s)	509, 663, 1194, 1585, 2260
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	5 cut(s)	509, 663, 1194, 1585, 2260
Ppu21I	YACGTR	2 cut(s)	28, 3248
PpuMI	RGGWCCY	1 cut(s)	2741
PscI	ACATGT	1 cut(s)	2222
Psp5II	RGGWCCY	1 cut(s)	2741
Psp6I	CCWGG	9 cut(s)	1044, 1306, 1441, 1828, 2410, 2887, 2966, 3427, 3459
PspCI	CACGTG	1 cut(s)	28
PspGI	CCWGG	9 cut(s)	1044, 1306, 1441, 1828, 2410, 2887, 2966, 3427, 3459
PspN4I	GGNNCC	4 cut(s)	48, 643, 2089, 2275
PspPI	GGNCC	6 cut(s)	641, 1826, 2087, 2273, 2408, 2741
PspPPI	RGGWCCY	1 cut(s)	2741
PstI	CTGCAG	1 cut(s)	1557
PteI	GCGCGC	1 cut(s)	72
RigI	GGCCGGCC	1 cut(s)	844
RseI	CAYNNNNRTG	2 cut(s)	1317, 2868
SacII	CCGCGG	1 cut(s)	848
SalI	GTCGAC	1 cut(s)	212
Sau3AI	GATC	8 cut(s)	366, 718, 1272, 1685, 1723, 2038, 2293, 2690
Sau96I	GGNCC	6 cut(s)	641, 1826, 2087, 2273, 2408, 2741
ScaI	AGTACT	3 cut(s)	2125, 2206, 2389
SchI	GAGTC	5 cut(s)	509, 663, 1194, 1586, 2261
SduI	GDGCHC	1 cut(s)	2982
SexAI	ACCWGGT	2 cut(s)	1441, 3427
SfaNI	GCATC	4 cut(s)	762, 1140, 1600, 1610
SfcI	CTRYAG	2 cut(s)	1553, 2171
Sfr303I	CCGCGG	1 cut(s)	848
SgrBI	CCGCGG	1 cut(s)	848
SinI	GGWCC	5 cut(s)	1826, 2087, 2273, 2408, 2741
SmaI	CCCGGG	1 cut(s)	799
SmiMI	CAYNNNNRTG	2 cut(s)	1317, 2868
SmlI	CTYRAG	2 cut(s)	1175, 2602
SmoI	CTYRAG	2 cut(s)	1175, 2602
SspI	AATATT	3 cut(s)	1855, 1981, 2290
SspMI	CTAG	5 cut(s)	1098, 1193, 1407, 2001, 2460
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	8 cut(s)	183, 383, 901, 998, 2166, 2212, 2429, 3116
TaiI	ACGT	5 cut(s)	30, 363, 1143, 3180, 3250
TatI	WGTACW	4 cut(s)	2102, 2123, 2204, 2387
TauI	GCSGC	5 cut(s)	348, 414, 708, 796, 847
TscAI	CASTG	7 cut(s)	823, 1091, 1939, 2367, 2788, 2953, 3121
TseFI	GTSAC	5 cut(s)	782, 895, 1136, 2253, 3170
TseI	GCWGC	9 cut(s)	408, 825, 977, 1234, 2116, 2331, 2676, 2922, 2938
Tsp45I	GTSAC	5 cut(s)	782, 895, 1136, 2253, 3170
TspGWI	ACGGA	5 cut(s)	376, 966, 1043, 1981, 3433
TspMI	CCCGGG	1 cut(s)	797
TspRI	CASTG	7 cut(s)	823, 1091, 1939, 2367, 2788, 2953, 3121
VpaK11BI	GGWCC	5 cut(s)	1826, 2087, 2273, 2408, 2741
XapI	RAATTY	5 cut(s)	1480, 1490, 1705, 2021, 3020
XceI	RCATGY	2 cut(s)	2226, 2381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2350
XmaI	CCCGGG	1 cut(s)	797
XmiI	GTMKAC	3 cut(s)	132, 213, 1929
XspI	CTAG	5 cut(s)	1098, 1193, 1407, 2001, 2460
ZrmI	AGTACT	3 cut(s)	2125, 2206, 2389
Zsp2I	ATGCAT	1 cut(s)	1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.