Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004574

Physical Location & Seq

Genomic Coordinates Reverse (-)

16743139 .. 16745231

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTTCCGTTGTCCCCGATAACCTCACCAGGGAGCAGTACGTGTACCTGGCGAAGCTCTCCGAGCAAGCGGAGCGCTATGAGGAGATGGTCCAGTTCATGGAGAAGCTGGTCGTTGGTTCGACTCCGGCCGCCGAGCTGACCGTCGAGGAGCGCAACCTTCTCTCCGTCGCGTACAAGAACGTGATCGGCTCGCTCCGTGCCGCCTGGCGCATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCCGGAAGAACGAGGAACACGTGGTGCTTGTCAAGGAGTACAGATCCAAGGTCGAGTCCGAGCTCTCTGATGTCTGCGCTAGCATATTGAAGCTCTTGGACTCCAATCTCGTGCCGTCGGCGTCGGCCAGTGAGTCCAAGGTCTTCTATCTGAAGATGAAGGGCGACTACCACCGCTACATGGCGGAGTTCAAGTCCGCCGAGGAGAGAAAGACTGCTGCTGAGGACACCATGCTTGCTTACAAGGCTGCCCAGGACATAGCGCTTGCGGATCTGTCACCAACTCATCCAATAAGATTGGGTCTGGCACTGAATTTCTCAGTGTTCTACTATGAGATTCTCAATCAGTCTGATAAAGCTTGCAGCATGGCCAAACAGGCATTTGAGGAAGCTATTGCTGAGCTAGACACTCTGGGAGAAGAATCATACAAGGACAGCACTCTAATCATGCAACTTCTAAGGGACAACCTCACTCTTTGGACTTCTGATGCTTCGGACCAGTTGGACGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

253

Amino Acids

28.42

Weight (kDa)

4.74

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65430 AT5G65430 AT5G65430
fragaria_vesca	FvH4_1g19920 FvH4_5g35740
malus_domestica	MD01G1037700.v1.1 MD08G1193600.v1.1 MD15G1315300.v1.1
prunus_persica	Prupe.1G528100_v2.0.a1 Prupe.6G196400_v2.0.a1
pyrus_communis	pycom01g06560 pycom08g16670 pycom15g27850
rosa_chinensis	RchiOBHm_Chr2g0111721 RchiOBHm_Chr7g0237361
rosa_laevigata	RLG00000001009 RLG00000017920
rosa_multiflora	Rmu_sc0000448.1_g000010
rosa_roxburghii	Rroxscaffold_2G00132140 Rroxscaffold_3G00224280
rosa_rugosa	Rorug02G0175800 Rorug07G0302900
rosa_samantha	Rh2AG228700 Rh2BG241000 Rh2CG232100 Rh2DG236700 Rh7BG430000 Rh7CG477500 Rh7DG446800
rosa_wichuraiana	Rw2G017670 Rw7G038110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccII	CGCG	1 cut(s)	173
AciI	CCGC	7 cut(s)	71, 132, 204, 418, 428, 441, 512
AclWI	GGATC	2 cut(s)	282, 522
AcoI	YGGCCR	3 cut(s)	129, 369, 612
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	416
AcvI	CACGTG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	4 cut(s)	41, 47, 176, 284
AfeI	AGCGCT	2 cut(s)	77, 507
AfiI	CCNNNNNNNGG	3 cut(s)	31, 100, 424
AflIII	ACRYGT	2 cut(s)	42, 262
AgsI	TTSAA	2 cut(s)	334, 436
AjnI	CCWGG	4 cut(s)	29, 48, 206, 495
AluBI	AGCT	8 cut(s)	58, 109, 139, 307, 337, 602, 635, 646
AluI	AGCT	8 cut(s)	58, 109, 139, 307, 337, 602, 635, 646
Alw21I	GWGCWC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	282, 522
Aor51HI	AGCGCT	2 cut(s)	77, 507
AoxI	GGCC	4 cut(s)	129, 244, 369, 612
ApeKI	GCWGC	3 cut(s)	461, 491, 606
ApoI	RAATTY	1 cut(s)	556
AspLEI	GCGC	5 cut(s)	78, 156, 213, 323, 508
AspS9I	GGNCC	3 cut(s)	91, 244, 739
AsuHPI	GGTGA	2 cut(s)	19, 513
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	91, 739
BalI	TGGCCA	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BauI	CACGAG	1 cut(s)	353
BbrPI	CACGTG	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	448, 478, 618
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	4 cut(s)	31, 50, 208, 497
BfaI	CTAG	2 cut(s)	324, 647
BfoI	RGCGCY	2 cut(s)	79, 509
BglI	GCCNNNNNGGC	1 cut(s)	620
BisI	GCNGC	5 cut(s)	132, 204, 462, 492, 607
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	5 cut(s)	133, 205, 463, 493, 608
Bme1390I	CCNGG	4 cut(s)	31, 50, 208, 497
Bme18I	GGWCC	2 cut(s)	91, 739
BmgT120I	GGNCC	3 cut(s)	91, 244, 739
BmrFI	CCNGG	4 cut(s)	31, 50, 208, 497
BmsI	GCATC	2 cut(s)	222, 721
BmtI	GCTAGC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	642
BsaAI	YACGTR	2 cut(s)	43, 265
BsaHI	GRCGYC	1 cut(s)	365
BsaJI	CCNNGG	5 cut(s)	30, 291, 381, 444, 495
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 100, 424
Bse1I	ACTGG	3 cut(s)	94, 372, 742
BseBI	CCWGG	4 cut(s)	31, 50, 208, 497
BseDI	CCNNGG	5 cut(s)	30, 291, 381, 444, 495
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	3 cut(s)	31, 100, 424
BseMII	CTCAG	3 cut(s)	456, 576, 633
BseNI	ACTGG	3 cut(s)	94, 372, 742
BseRI	GAGGAG	4 cut(s)	98, 164, 254, 461
BseX3I	CGGCCG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	448, 478, 618
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	2 cut(s)	132, 228
BshFI	GGCC	4 cut(s)	131, 246, 371, 614
BsiEI	CGRYCG	2 cut(s)	132, 228
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	2 cut(s)	128, 247
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	3 cut(s)	31, 100, 424
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	4 cut(s)	131, 246, 371, 614
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	186, 225, 287, 514
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	7 cut(s)	71, 132, 204, 418, 428, 441, 512
BspANI	GGCC	4 cut(s)	131, 246, 371, 614
BspCNI	CTCAG	3 cut(s)	457, 575, 634
BspFNI	CGCG	1 cut(s)	173
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	282, 522
BsrI	ACTGG	3 cut(s)	94, 372, 742
BssECI	CCNNGG	5 cut(s)	30, 291, 381, 444, 495
BssMI	GATC	4 cut(s)	186, 225, 287, 514
BssNI	GRCGYC	1 cut(s)	365
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	2 cut(s)	291, 381
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	4 cut(s)	31, 50, 208, 497
Bst4CI	ACNGT	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	365
BstBAI	YACGTR	2 cut(s)	43, 265
BstC8I	GCNNGC	6 cut(s)	69, 194, 325, 480, 510, 604
BstDEI	CTNAG	4 cut(s)	465, 562, 642, 701
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	2 cut(s)	79, 509
BstHHI	GCGC	5 cut(s)	78, 156, 213, 323, 508
BstKTI	GATC	4 cut(s)	189, 228, 290, 517
BstMBI	GATC	4 cut(s)	186, 225, 287, 514
BstMCI	CGRYCG	2 cut(s)	132, 228
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 73, 488, 620
BstNI	CCWGG	4 cut(s)	31, 50, 208, 497
BstSCI	CCNGG	4 cut(s)	29, 48, 206, 495
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	448, 478, 618
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	287, 514
BstYI	RGATCY	2 cut(s)	287, 514
BstZI	CGGCCG	1 cut(s)	129
BsuRI	GGCC	4 cut(s)	131, 246, 371, 614
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	3 cut(s)	379, 551, 570
Cac8I	GCNNGC	6 cut(s)	69, 194, 325, 480, 510, 604
CfoI	GCGC	5 cut(s)	78, 156, 213, 323, 508
Cfr13I	GGNCC	3 cut(s)	91, 244, 739
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	4 cut(s)	40, 46, 175, 283
CviAII	CATG	5 cut(s)	100, 424, 475, 610, 691
CviQI	GTAC	4 cut(s)	40, 46, 175, 283
DdeI	CTNAG	4 cut(s)	465, 562, 642, 701
DpnI	GATC	4 cut(s)	188, 227, 289, 516
DpnII	GATC	4 cut(s)	186, 225, 287, 514
DraIII	CACNNNGTG	1 cut(s)	268
EaeI	YGGCCR	3 cut(s)	129, 369, 612
EagI	CGGCCG	1 cut(s)	129
EciI	GGCGGA	2 cut(s)	430, 443
Ecl136II	GAGCTC	1 cut(s)	307
EclXI	CGGCCG	1 cut(s)	129
Eco130I	CCWWGG	2 cut(s)	291, 381
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	91, 739
Eco47III	AGCGCT	2 cut(s)	77, 507
Eco52I	CGGCCG	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	416
Eco72I	CACGTG	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	4 cut(s)	29, 48, 206, 495
EcoT14I	CCWWGG	2 cut(s)	291, 381
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	2 cut(s)	291, 381
FaeI	CATG	5 cut(s)	103, 427, 478, 613, 694
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	5 cut(s)	99, 423, 474, 609, 690
Fnu4HI	GCNGC	5 cut(s)	132, 204, 462, 492, 607
FokI	GGATG	1 cut(s)	516
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	5 cut(s)	132, 204, 462, 492, 607
FspBI	CTAG	2 cut(s)	324, 647
GlaI	GCGC	5 cut(s)	77, 155, 212, 322, 507
GluI	GCNGC	5 cut(s)	132, 204, 462, 492, 607
HaeII	RGCGCY	2 cut(s)	79, 509
HaeIII	GGCC	4 cut(s)	131, 246, 371, 614
HapII	CCGG	2 cut(s)	128, 247
HgaI	GACGC	1 cut(s)	354
HhaI	GCGC	5 cut(s)	78, 156, 213, 323, 508
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	5 cut(s)	103, 427, 478, 613, 694
Hin6I	GCGC	5 cut(s)	76, 154, 211, 321, 506
HinP1I	GCGC	5 cut(s)	76, 154, 211, 321, 506
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	6 cut(s)	124, 299, 344, 377, 580, 665
HpaII	CCGG	2 cut(s)	128, 247
HphI	GGTGA	2 cut(s)	19, 513
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	7 cut(s)	64, 304, 313, 396, 595, 730, 739
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	5 cut(s)	149, 173, 226, 364, 370
HpyAV	CCTTC	3 cut(s)	170, 229, 397
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	3 cut(s)	42, 183, 264
HpyCH4V	TGCA	2 cut(s)	606, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 73, 488, 620
HpyF3I	CTNAG	4 cut(s)	465, 562, 642, 701
HpySE526I	ACGT	3 cut(s)	42, 183, 264
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	5 cut(s)	103, 427, 478, 613, 694
HspAI	GCGC	5 cut(s)	76, 154, 211, 321, 506
Kzo9I	GATC	4 cut(s)	186, 225, 287, 514
LmnI	GCTCC	4 cut(s)	34, 73, 151, 201
Lsp1109I	GCAGC	3 cut(s)	448, 478, 618
LweI	GCATC	2 cut(s)	222, 721
MaeI	CTAG	2 cut(s)	324, 647
MaeII	ACGT	3 cut(s)	42, 183, 264
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	4 cut(s)	188, 227, 289, 516
MboI	GATC	4 cut(s)	186, 225, 287, 514
MboII	GAAGA	4 cut(s)	262, 379, 409, 674
MflI	RGATCY	2 cut(s)	287, 514
MhlI	GDGCHC	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	1 cut(s)	556
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	4 cut(s)	118, 308, 338, 386
MmeI	TCCRAC	1 cut(s)	726
Mox20I	TGGCCA	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	614
MspI	CCGG	2 cut(s)	128, 247
MspR9I	CCNGG	4 cut(s)	31, 50, 208, 497
MvaI	CCWGG	4 cut(s)	31, 50, 208, 497
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	64, 73, 488, 620
NdeII	GATC	4 cut(s)	186, 225, 287, 514
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	5 cut(s)	103, 427, 478, 613, 694
NmeAIII	GCCGAG	2 cut(s)	160, 469
NmuCI	GTSAC	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	580, 665
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	5 cut(s)	133, 205, 463, 493, 608
Ple19I	CGATCG	1 cut(s)	228
PleI	GAGTC	4 cut(s)	118, 307, 338, 385
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
PpsI	GAGTC	4 cut(s)	118, 307, 338, 385
Ppu21I	YACGTR	2 cut(s)	43, 265
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	4 cut(s)	29, 48, 206, 495
PspCI	CACGTG	1 cut(s)	265
PspGI	CCWGG	4 cut(s)	29, 48, 206, 495
PspPI	GGNCC	3 cut(s)	91, 244, 739
PsuI	RGATCY	2 cut(s)	287, 514
PvuI	CGATCG	1 cut(s)	228
RsaI	GTAC	4 cut(s)	41, 47, 176, 284
RsaNI	GTAC	4 cut(s)	40, 46, 175, 283
SacI	GAGCTC	1 cut(s)	309
SatI	GCNGC	5 cut(s)	132, 204, 462, 492, 607
Sau3AI	GATC	4 cut(s)	186, 225, 287, 514
Sau96I	GGNCC	3 cut(s)	91, 244, 739
SchI	GAGTC	4 cut(s)	118, 308, 338, 386
ScrFI	CCNGG	4 cut(s)	31, 50, 208, 497
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	2 cut(s)	222, 721
SinI	GGWCC	2 cut(s)	91, 739
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	7 cut(s)	71, 132, 204, 418, 428, 441, 512
SspMI	CTAG	2 cut(s)	324, 647
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	4 cut(s)	29, 48, 206, 495
StyI	CCWWGG	2 cut(s)	291, 381
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	3 cut(s)	45, 186, 267
TaqI	TCGA	5 cut(s)	122, 147, 224, 228, 297
TasI	AATT	1 cut(s)	556
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	2 cut(s)	134, 206
TfiI	GAWTC	2 cut(s)	580, 665
TscAI	CASTG	3 cut(s)	379, 558, 570
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	3 cut(s)	461, 491, 606
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	2 cut(s)	88, 416
TspGWI	ACGGA	2 cut(s)	157, 188
TspRI	CASTG	3 cut(s)	379, 558, 570
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	91, 739
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	2 cut(s)	324, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.