Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000448.1

Orthogroup ID

OG0004574

Physical Location & Seq

Genomic Coordinates Reverse (-)

75573 .. 79605

Gene Structure 4033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000448.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggcgtccgccgtgccggaaaccctaagccgcgagcagtacgtgtacatggcgaagctcgccgagcaagccgagcgctacgaggagatggtcagcttcatggagaagctcgtcgtcgcctccacagccgccggcaccgagctcaccgtcgaggagcgcaacctcctcagcgtcgcctacaagaacgtcatcggctccctccgcgccgcctggcgcatcgtctcctccatcgagcagaaggaggagggccgccgcaacgaggagcacgtggcgctcgtcaagcagtacagatctaaagtcgagactgagctctcggccatctgcgccggaattctggacctccttcagtcgcaccttgtgccgtcggccaccgccggcgagtccaaggtgttttacttgaagatgaagggggattaccatcggtaccttgctgagtttaagaacggcgatgagaggaagactgctgctgaggatactatgctggcttacaaggccgctcaggatattgcgttggctgatttggctcctacacatcctataaggctggggctggcgcttaacttttcggtgttttactatgagatcctcaattcctcagagaaggcttgcagcatggcgaagcaggcctttgaagaggcaattgctgaacttgatacgctgggagaggaatcatacaaggacagcactctaatcatgcaacttctgagggacaacctcactctttggacttcagacttgcaggagcaaatggacgaggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

253

Amino Acids

28.43

Weight (kDa)

4.84

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65430 AT5G65430 AT5G65430
fragaria_vesca	FvH4_1g19920 FvH4_5g35740
malus_domestica	MD01G1037700.v1.1 MD08G1193600.v1.1 MD15G1315300.v1.1
prunus_persica	Prupe.1G528100_v2.0.a1 Prupe.6G196400_v2.0.a1
pyrus_communis	pycom01g06560 pycom08g16670 pycom15g27850
rosa_chinensis	RchiOBHm_Chr2g0111721 RchiOBHm_Chr7g0237361
rosa_laevigata	RLG00000001009 RLG00000017920
rosa_multiflora	Rmu_sc0000448.1_g000010
rosa_roxburghii	Rroxscaffold_2G00132140 Rroxscaffold_3G00224280
rosa_rugosa	Rorug02G0175800 Rorug07G0302900
rosa_samantha	Rh2AG228700 Rh2BG241000 Rh2CG232100 Rh2DG236700 Rh7BG430000 Rh7CG477500 Rh7DG446800
rosa_wichuraiana	Rw2G017670 Rw7G038110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	2 cut(s)	134, 423
AccBSI	CCGCTC	1 cut(s)	497
AccII	CGCG	2 cut(s)	33, 204
AciI	CCGC	9 cut(s)	9, 31, 129, 202, 207, 250, 253, 372, 495
AclWI	GGATC	1 cut(s)	577
AcoI	YGGCCR	2 cut(s)	315, 366
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	2 cut(s)	329, 714
AcvI	CACGTG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	4 cut(s)	41, 47, 287, 425
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	400, 632
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	5 cut(s)	58, 96, 109, 142, 310
AluI	AGCT	5 cut(s)	58, 96, 109, 142, 310
Alw21I	GWGCWC	3 cut(s)	144, 267, 312
Alw26I	GTCTC	2 cut(s)	226, 296
AlwI	GGATC	1 cut(s)	577
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	5 cut(s)	247, 315, 366, 492, 624
ApeKI	GCWGC	2 cut(s)	464, 609
ApoI	RAATTY	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	423
AspLEI	GCGC	7 cut(s)	78, 159, 206, 216, 274, 326, 556
AspS9I	GGNCC	2 cut(s)	247, 337
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	2 cut(s)	134, 423
BanII	GRGCYC	2 cut(s)	144, 312
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
BbrPI	CACGTG	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	3 cut(s)	144, 267, 312
BbvCI	CCTCAGC	2 cut(s)	167, 468
BbvI	GCAGC	2 cut(s)	451, 621
BccI	CCATC	4 cut(s)	82, 236, 326, 426
BceAI	ACGGC	2 cut(s)	346, 460
BciT130I	CCWGG	1 cut(s)	211
BciVI	GTATCC	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	226, 296
BfoI	RGCGCY	3 cut(s)	79, 275, 557
BfuI	GTATCC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	8 cut(s)	31, 129, 207, 250, 253, 465, 495, 610
BlsI	GCNGC	8 cut(s)	32, 130, 208, 251, 254, 466, 496, 611
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	247, 337
BmiI	GGNNCC	4 cut(s)	136, 196, 425, 525
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	464
Bpu10I	CCTNAGC	4 cut(s)	26, 167, 468, 498
BsaAI	YACGTR	2 cut(s)	43, 268
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	2 cut(s)	131, 374
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	7 cut(s)	181, 297, 423, 459, 512, 609, 695
BseRI	GAGGAG	6 cut(s)	98, 155, 167, 214, 257, 275
BseXI	GCAGC	2 cut(s)	451, 621
BseYI	CCCAGC	2 cut(s)	544, 658
Bsh1236I	CGCG	2 cut(s)	33, 204
BshFI	GGCC	5 cut(s)	249, 317, 368, 494, 626
BshNI	GGYRCC	2 cut(s)	134, 423
BsiHKAI	GWGCWC	3 cut(s)	144, 267, 312
BsiSI	CCGG	4 cut(s)	17, 132, 327, 375
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	226, 296
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	5 cut(s)	249, 317, 368, 494, 626
Bsp1286I	GDGCHC	3 cut(s)	144, 267, 312
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	290, 582
BspACI	CCGC	9 cut(s)	9, 31, 129, 202, 207, 250, 253, 372, 495
BspANI	GGCC	5 cut(s)	249, 317, 368, 494, 626
BspCNI	CTCAG	7 cut(s)	180, 298, 424, 460, 511, 608, 696
BspFNI	CGCG	2 cut(s)	33, 204
BspLI	GGNNCC	4 cut(s)	136, 196, 425, 525
BspPI	GGATC	1 cut(s)	577
BspT107I	GGYRCC	2 cut(s)	134, 423
BsrBI	CCGCTC	1 cut(s)	497
BsrFI	RCCGGY	2 cut(s)	131, 374
BsrGI	TGTACA	1 cut(s)	45
BssAI	RCCGGY	2 cut(s)	131, 374
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	290, 582
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	45
BstBAI	YACGTR	2 cut(s)	43, 268
BstC8I	GCNNGC	9 cut(s)	35, 60, 69, 133, 376, 483, 552, 607, 624
BstDEI	CTNAG	8 cut(s)	26, 167, 306, 432, 468, 498, 595, 704
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	2 cut(s)	33, 204
BstH2I	RGCGCY	3 cut(s)	79, 275, 557
BstHHI	GCGC	7 cut(s)	78, 159, 206, 216, 274, 326, 556
BstKTI	GATC	2 cut(s)	293, 585
BstMAI	GTCTC	2 cut(s)	226, 296
BstMBI	GATC	2 cut(s)	290, 582
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstUI	CGCG	2 cut(s)	33, 204
BstV1I	GCAGC	2 cut(s)	451, 621
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	290, 582
BstYI	RGATCY	2 cut(s)	290, 582
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	5 cut(s)	249, 317, 368, 494, 626
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	9 cut(s)	35, 60, 69, 133, 376, 483, 552, 607, 624
CfoI	GCGC	7 cut(s)	78, 159, 206, 216, 274, 326, 556
Cfr10I	RCCGGY	2 cut(s)	131, 374
Cfr13I	GGNCC	2 cut(s)	247, 337
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	4 cut(s)	40, 46, 286, 424
CviAII	CATG	4 cut(s)	49, 100, 613, 694
CviQI	GTAC	4 cut(s)	40, 46, 286, 424
DdeI	CTNAG	8 cut(s)	26, 167, 306, 432, 468, 498, 595, 704
DpnI	GATC	2 cut(s)	292, 584
DpnII	GATC	2 cut(s)	290, 582
DraIII	CACNNNGTG	1 cut(s)	358
EaeI	YGGCCR	2 cut(s)	315, 366
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Ecl136II	GAGCTC	2 cut(s)	142, 310
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	626
Eco24I	GRGCYC	2 cut(s)	144, 312
Eco47I	GGWCC	1 cut(s)	337
Eco47III	AGCGCT	1 cut(s)	77
Eco53kI	GAGCTC	2 cut(s)	142, 310
Eco57I	CTGAAG	2 cut(s)	329, 714
Eco72I	CACGTG	1 cut(s)	268
EcoICRI	GAGCTC	2 cut(s)	142, 310
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	2 cut(s)	144, 312
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	4 cut(s)	52, 103, 616, 697
FaiI	YATR	8 cut(s)	50, 101, 479, 539, 579, 614, 673, 695
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	4 cut(s)	48, 99, 612, 693
Fnu4HI	GCNGC	8 cut(s)	31, 129, 207, 250, 253, 465, 495, 610
FokI	GGATG	1 cut(s)	519
FriOI	GRGCYC	2 cut(s)	144, 312
Fsp4HI	GCNGC	8 cut(s)	31, 129, 207, 250, 253, 465, 495, 610
GlaI	GCGC	7 cut(s)	77, 158, 205, 215, 273, 325, 555
GluI	GCNGC	8 cut(s)	31, 129, 207, 250, 253, 465, 495, 610
GsaI	CCCAGC	2 cut(s)	548, 662
HaeII	RGCGCY	3 cut(s)	79, 275, 557
HaeIII	GGCC	5 cut(s)	249, 317, 368, 494, 626
HapII	CCGG	4 cut(s)	17, 132, 327, 375
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	7 cut(s)	78, 159, 206, 216, 274, 326, 556
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	52, 103, 616, 697
Hin6I	GCGC	7 cut(s)	76, 157, 204, 214, 272, 324, 554
HinP1I	GCGC	7 cut(s)	76, 157, 204, 214, 272, 324, 554
HinfI	GANTC	2 cut(s)	380, 668
HpaII	CCGG	4 cut(s)	17, 132, 327, 375
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	598, 705, 733
Hpy188III	TCNNGA	3 cut(s)	301, 335, 500
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	5 cut(s)	116, 119, 152, 176, 367
HpyAV	CCTTC	4 cut(s)	232, 353, 400, 595
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	3 cut(s)	42, 186, 267
HpyCH4V	TGCA	3 cut(s)	609, 697, 739
HpyF3I	CTNAG	8 cut(s)	26, 167, 306, 432, 468, 498, 595, 704
HpySE526I	ACGT	3 cut(s)	42, 186, 267
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	52, 103, 616, 697
HspAI	GCGC	7 cut(s)	76, 157, 204, 214, 272, 324, 554
KpnI	GGTACC	1 cut(s)	427
KroI	GCCGGC	2 cut(s)	131, 374
KroNI	GCCGGC	2 cut(s)	133, 376
Kzo9I	GATC	2 cut(s)	290, 582
LmnI	GCTCC	5 cut(s)	154, 200, 262, 529, 742
Lsp1109I	GCAGC	2 cut(s)	451, 621
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	3 cut(s)	42, 186, 267
MalI	GATC	2 cut(s)	292, 584
MbiI	CCGCTC	1 cut(s)	497
MboI	GATC	2 cut(s)	290, 582
MboII	GAAGA	3 cut(s)	412, 469, 644
MfeI	CAATTG	1 cut(s)	639
MflI	RGATCY	2 cut(s)	290, 582
MhlI	GDGCHC	3 cut(s)	144, 267, 312
MluCI	AATT	3 cut(s)	330, 589, 639
MlyI	GAGTC	1 cut(s)	389
MreI	CGCCGGCG	1 cut(s)	374
MroNI	GCCGGC	2 cut(s)	131, 374
MseI	TTAA	3 cut(s)	438, 558, 760
MspI	CCGG	4 cut(s)	17, 132, 327, 375
MspR9I	CCNGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	2 cut(s)	33, 204
NaeI	GCCGGC	2 cut(s)	133, 376
NdeII	GATC	2 cut(s)	290, 582
NgoMIV	GCCGGC	2 cut(s)	131, 374
NlaIII	CATG	4 cut(s)	52, 103, 616, 697
NlaIV	GGNNCC	4 cut(s)	136, 196, 425, 525
NmeAIII	GCCGAG	3 cut(s)	88, 97, 293
PceI	AGGCCT	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 273
PdiI	GCCGGC	2 cut(s)	133, 376
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	8 cut(s)	32, 130, 208, 251, 254, 466, 496, 611
PleI	GAGTC	1 cut(s)	388
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	388
Ppu21I	YACGTR	2 cut(s)	43, 268
Psp124BI	GAGCTC	2 cut(s)	144, 312
Psp6I	CCWGG	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	544, 658
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	4 cut(s)	136, 196, 425, 525
PspPI	GGNCC	2 cut(s)	247, 337
PsuI	RGATCY	2 cut(s)	290, 582
RsaI	GTAC	4 cut(s)	41, 47, 287, 425
RsaNI	GTAC	4 cut(s)	40, 46, 286, 424
SacI	GAGCTC	2 cut(s)	144, 312
SaqAI	TTAA	3 cut(s)	438, 558, 760
SatI	GCNGC	8 cut(s)	31, 129, 207, 250, 253, 465, 495, 610
Sau3AI	GATC	2 cut(s)	290, 582
Sau96I	GGNCC	2 cut(s)	247, 337
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	3 cut(s)	144, 267, 312
SfaNI	GCATC	1 cut(s)	225
SgrAI	CRCCGGYG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	337
Sse9I	AATT	3 cut(s)	330, 589, 639
SseBI	AGGCCT	1 cut(s)	626
SsiI	CCGC	9 cut(s)	9, 31, 129, 202, 207, 250, 253, 372, 495
SstI	GAGCTC	2 cut(s)	144, 312
StuI	AGGCCT	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	3 cut(s)	45, 189, 270
TaqI	TCGA	3 cut(s)	150, 231, 300
TasI	AATT	3 cut(s)	330, 589, 639
TatI	WGTACW	2 cut(s)	45, 285
TauI	GCSGC	6 cut(s)	33, 131, 209, 252, 255, 497
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	3 cut(s)	438, 558, 760
Tru9I	TTAA	3 cut(s)	438, 558, 760
TseI	GCWGC	2 cut(s)	464, 609
TspDTI	ATGAA	2 cut(s)	88, 419
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.