pycom08g17400

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0002031
Physical Location & Seq
Forward (+)
17602007 .. 17607503
5497 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1488 bp
ATGAAGCGATTTGAGGTATTTGAAGATAGGTACCGTAGCTTCATCGATCCTGATATACCTAGTTTTTACTATGGGTCTCATTACTCAAGCATGGGGATTGTGCTTTATTACCTTCTGAGATTAGAGCCGTTTACTTCTCTCCATCGAAATTTACAGGGTGGTAAATTTGACCATGCTGACCGTCTCTTTCAAAGCATTGAGGGAACATATCAGAACTGCCTTTCTAATACTAGTGATGTGAAGGAGTTAATACCGGAGTTCTTTTACATGCCAGAGTTTCTTGTTAATTCAAATGCTTATCATTTTGGTATGAAGCAAGATGGAGAACCTATTGCAGATGTTTGTCTCCCACCCTGGGCCAAGGGCTCACCTGAAGAATTTATTAACAAGAACAGAGAAGCCCTTGAAAGCGAATATGTTAGCTCTAATCTGCACCATTGGATAGATTTGGTATTTGGTTACAAGCAGCGTGGAAAACCTGCTGTGGAGGCAGCAAATATTTTTTATTACTTAACCTATGAAGGTGCTGTTGACCTGGAGACCATGGAAGATGATTTGCAAAGGTCAGCTATTGAAGACCAAATTGCAAATTTTGGCCAGACACCAATTCAGATTTTCCGTAAAAAACACCCAAGAAGAGGGCCACCTATTCCAATTGCACATCCCTTGCGCTTCGCACCTAGTTCTATTAACTTGACATCGATTGTTTGTAGTACAAGTCAAACACGGTCGGCTGCATTATATGTTCGGACTGTGGACTCCAATGTCGTTCTTGTAAACCAGGGTCTCACCTTGTCAGTTAAGATGTGGTTGACAACCTCACTGCAATCTGGTGGAAATTTTACCTTCTCTGGCTCCCAGGATCGATCATTTGGCGTTGGTTCTGATATTCTCTCTCCTCGTAAAATTGGGAGTCCTTCAGTTGAAAATTTTGAACCTGGAGGACAATGCTTTGCAACCATGCAAACACCATCTGAGAATTTTTTGATCTCATGTGGCAATTGGGAAAATAGCTTTCAGGTTATATCGTTATATGATGGCAGAATGGTACAAAGCATCAGACAGCATAAGGATGTGGTCAGTTGTGTTGCAGTGACATCTGATGGAAGCTTCCTTGCAACTGGAAGTTATGACACTACAATTATGGTGTGGGAAGTCTTTCGAGGTAGAACCCAAGAAAAGAGACCTCGTAATACACAGACAGAACTACCACGAAAAGATTATGTCATTGTTCAAACTCCTTTTCGTATTCTCTGTGGGCACGATGATATAATTACATGCTTGTATATCAGCGTGGAGCTTGACATAGTGATCGATGGATCACATAAAGATGGAACTTGTGTTTTTCATACCCTGCAGAGTGGAAGATATGTAAGATCCTTGCGCCATCCATCTGGATGTGCATTGTCAAAGCTCGTCGCTTCTCGACATGGACTGATTGTGTTTTATGCTGATGATCGATCTGAGTTTGCATCTTTATTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

496

Amino Acids

55.99

Weight (kDa)

5.98

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beach PF02138 2 - 213 2.7e-87 Beige/BEACH domain
NBCH_WD40 PF20426 234 - 486 2.7e-137 Neurobeachin beta propeller domain
WD40_Prp19 PF24814 313 - 471 2.4e-08 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 323 - 391 1.7e-09 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 323 - 392 4.7e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 324 - 395 3.5e-06 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 325 - 390 1.9e-08 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 325 - 387 3.9e-08 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 346 - 389 7.3e-06 TEP-1 second beta-propeller
WD40 PF00400 348 - 384 1.2e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 764
Acc36I ACCTGC 1 cut(s) 487
Acc65I GGTACC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 30
AclWI GGATC 4 cut(s) 41, 870, 1327, 1371
AcoI YGGCCR 1 cut(s) 595
AcsI RAATTY 7 cut(s) 148, 164, 377, 589, 838, 928, 979
AcuI CTGAAG 2 cut(s) 393, 903
AfaI GTAC 3 cut(s) 32, 715, 1050
AfiI CCNNNNNNNGG 2 cut(s) 355, 638
AgsI TTSAA 9 cut(s) 23, 191, 291, 407, 575, 926, 935, 1235, 1483
AhlI ACTAGT 1 cut(s) 230
AjnI CCWGG 5 cut(s) 353, 534, 780, 858, 937
AluBI AGCT 7 cut(s) 39, 423, 569, 1014, 1110, 1300, 1414
AluI AGCT 7 cut(s) 39, 423, 569, 1014, 1110, 1300, 1414
Alw26I GTCTC 6 cut(s) 81, 188, 350, 533, 791, 1177
AlwI GGATC 4 cut(s) 41, 870, 1327, 1371
AoxI GGCC 3 cut(s) 357, 595, 641
ApeKI GCWGC 3 cut(s) 466, 491, 734
ApoI RAATTY 7 cut(s) 148, 164, 377, 589, 838, 928, 979
Asp700I GAANNNNTTC 1 cut(s) 1158
Asp718I GGTACC 1 cut(s) 30
AspLEI GCGC 2 cut(s) 672, 1386
AspS9I GGNCC 2 cut(s) 357, 641
AsuHPI GGTGA 2 cut(s) 360, 781
BaeGI GKGCMC 1 cut(s) 1263
BalI TGGCCA 1 cut(s) 597
BanI GGYRCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BbsI GAAGAC 1 cut(s) 582
BbvI GCAGC 3 cut(s) 478, 503, 721
BccI CCATC 9 cut(s) 150, 314, 979, 1031, 1097, 1310, 1325, 1395, 1399
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 5 cut(s) 355, 536, 782, 860, 939
BcoDI GTCTC 6 cut(s) 81, 188, 350, 533, 791, 1177
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 3 cut(s) 60, 231, 681
BfmI CTRYAG 1 cut(s) 1355
BfuAI ACCTGC 1 cut(s) 487
BisI GCNGC 3 cut(s) 467, 492, 735
BlsI GCNGC 3 cut(s) 468, 493, 736
Bme1390I CCNGG 5 cut(s) 355, 536, 782, 860, 939
BmgT120I GGNCC 2 cut(s) 357, 641
BmiI GGNNCC 2 cut(s) 32, 856
BmrFI CCNGG 5 cut(s) 355, 536, 782, 860, 939
BmsI GCATC 2 cut(s) 1065, 1481
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 2 cut(s) 557, 960
BpuEI CTTGAG 1 cut(s) 70
Bsa29I ATCGAT 5 cut(s) 45, 701, 865, 1314, 1459
BsaI GGTCTC 4 cut(s) 81, 533, 791, 1177
BsaJI CCNNGG 6 cut(s) 353, 354, 360, 543, 781, 858
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 638
Bse1I ACTGG 1 cut(s) 1126
BseBI CCWGG 5 cut(s) 355, 536, 782, 860, 939
BseCI ATCGAT 5 cut(s) 45, 701, 865, 1314, 1459
BseDI CCNNGG 6 cut(s) 353, 354, 360, 543, 781, 858
BseGI GGATG 4 cut(s) 661, 1078, 1387, 1403
BseLI CCNNNNNNNGG 2 cut(s) 355, 638
BseMII CTCAG 3 cut(s) 107, 966, 1455
BseNI ACTGG 1 cut(s) 1126
BseRI GAGGAG 1 cut(s) 888
BseSI GKGCMC 1 cut(s) 1263
BseXI GCAGC 3 cut(s) 478, 503, 721
BsgI GTGCAG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 731
BshFI GGCC 3 cut(s) 359, 597, 643
BshNI GGYRCC 1 cut(s) 30
BshVI ATCGAT 5 cut(s) 45, 701, 865, 1314, 1459
BsiEI CGRYCG 1 cut(s) 731
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 355, 638
BsmAI GTCTC 6 cut(s) 81, 188, 350, 533, 791, 1177
BsmBI CGTCTC 1 cut(s) 188
BsnI GGCC 3 cut(s) 359, 597, 643
Bso31I GGTCTC 4 cut(s) 81, 533, 791, 1177
Bsp1286I GDGCHC 2 cut(s) 368, 1263
Bsp143I GATC 9 cut(s) 46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
Bsp19I CCATGG 1 cut(s) 543
BspANI GGCC 3 cut(s) 359, 597, 643
BspCNI CTCAG 3 cut(s) 108, 967, 1456
BspDI ATCGAT 5 cut(s) 45, 701, 865, 1314, 1459
BspLI GGNNCC 2 cut(s) 32, 856
BspMAI CTGCAG 1 cut(s) 1359
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 4 cut(s) 41, 870, 1327, 1371
BspT107I GGYRCC 1 cut(s) 30
BspTNI GGTCTC 4 cut(s) 81, 533, 791, 1177
BsrI ACTGG 1 cut(s) 1126
BssECI CCNNGG 6 cut(s) 353, 354, 360, 543, 781, 858
BssMI GATC 9 cut(s) 46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
BssT1I CCWWGG 2 cut(s) 360, 543
Bst2UI CCWGG 5 cut(s) 355, 536, 782, 860, 939
Bst4CI ACNGT 4 cut(s) 35, 182, 729, 754
Bst6I CTCTTC 1 cut(s) 631
BstDEI CTNAG 3 cut(s) 116, 975, 1464
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 4 cut(s) 661, 1078, 1387, 1403
BstHHI GCGC 2 cut(s) 672, 1386
BstKTI GATC 9 cut(s) 49, 865, 869, 990, 1314, 1322, 1379, 1459, 1463
BstMAI GTCTC 6 cut(s) 81, 188, 350, 533, 791, 1177
BstMBI GATC 9 cut(s) 46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
BstMCI CGRYCG 1 cut(s) 731
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 5 cut(s) 355, 536, 782, 860, 939
BstNSI RCATGY 2 cut(s) 271, 1281
BstSCI CCNGG 5 cut(s) 353, 534, 780, 858, 937
BstSFI CTRYAG 1 cut(s) 1355
BstSLI GKGCMC 1 cut(s) 1263
BstV1I GCAGC 3 cut(s) 478, 503, 721
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 1376
BstXI CCANNNNNNTGG 1 cut(s) 1394
BstYI RGATCY 1 cut(s) 1376
Bsu15I ATCGAT 5 cut(s) 45, 701, 865, 1314, 1459
BsuRI GGCC 3 cut(s) 359, 597, 643
BsuTUI ATCGAT 5 cut(s) 45, 701, 865, 1314, 1459
BtgI CCRYGG 1 cut(s) 543
BtsCI GGATG 4 cut(s) 661, 1078, 1387, 1403
BtsI GCAGTG 2 cut(s) 821, 1098
BtsIMutI CAGTG 2 cut(s) 821, 1098
BveI ACCTGC 1 cut(s) 487
CfoI GCGC 2 cut(s) 672, 1386
Cfr13I GGNCC 2 cut(s) 357, 641
ClaI ATCGAT 5 cut(s) 45, 701, 865, 1314, 1459
Csp6I GTAC 3 cut(s) 31, 714, 1049
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 8 cut(s) 91, 173, 268, 544, 961, 993, 1278, 1430
CviQI GTAC 3 cut(s) 31, 714, 1049
DdeI CTNAG 3 cut(s) 116, 975, 1464
DpnI GATC 9 cut(s) 48, 864, 868, 989, 1313, 1321, 1378, 1458, 1462
DpnII GATC 9 cut(s) 46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
DrdI GACNNNNNNGTC 1 cut(s) 764
DseDI GACNNNNNNGTC 1 cut(s) 764
EaeI YGGCCR 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
Eco130I CCWWGG 2 cut(s) 360, 543
Eco24I GRGCYC 1 cut(s) 368
Eco31I GGTCTC 4 cut(s) 81, 533, 791, 1177
Eco57I CTGAAG 2 cut(s) 393, 903
EcoRII CCWGG 5 cut(s) 353, 534, 780, 858, 937
EcoT14I CCWWGG 2 cut(s) 360, 543
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 2 cut(s) 360, 543
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 8 cut(s) 94, 176, 271, 547, 964, 996, 1281, 1433
FatI CATG 8 cut(s) 90, 172, 267, 543, 960, 992, 1277, 1429
Fnu4HI GCNGC 3 cut(s) 467, 492, 735
FokI GGATG 4 cut(s) 648, 1085, 1374, 1410
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 3 cut(s) 467, 492, 735
FspBI CTAG 3 cut(s) 60, 231, 681
GlaI GCGC 2 cut(s) 671, 1385
GluI GCNGC 3 cut(s) 467, 492, 735
GsuI CTGGAG 2 cut(s) 557, 960
HaeIII GGCC 3 cut(s) 359, 597, 643
HapII CCGG 1 cut(s) 254
HhaI GCGC 2 cut(s) 672, 1386
Hin1II CATG 8 cut(s) 94, 176, 271, 547, 964, 996, 1281, 1433
Hin6I GCGC 2 cut(s) 670, 1384
HinP1I GCGC 2 cut(s) 670, 1384
HincII GTYRAC 2 cut(s) 532, 813
HindII GTYRAC 2 cut(s) 532, 813
HindIII AAGCTT 1 cut(s) 1108
HinfI GANTC 2 cut(s) 758, 913
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 360, 781
Hpy166II GTNNAC 5 cut(s) 132, 532, 757, 778, 813
Hpy188I TCNGA 9 cut(s) 117, 213, 612, 750, 886, 976, 1061, 1102, 1465
Hpy188III TCNNGA 3 cut(s) 50, 1395, 1425
Hpy8I GTNNAC 5 cut(s) 132, 532, 757, 778, 813
Hpy99I CGWCG 1 cut(s) 1421
HpyAV CCTTC 5 cut(s) 122, 235, 515, 856, 927
HpyCH4III ACNGT 4 cut(s) 35, 182, 729, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 3 cut(s) 116, 975, 1464
Hsp92II CATG 8 cut(s) 94, 176, 271, 547, 964, 996, 1281, 1433
HspAI GCGC 2 cut(s) 670, 1384
KpnI GGTACC 1 cut(s) 34
Kzo9I GATC 9 cut(s) 46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
LmnI GCTCC 2 cut(s) 860, 1297
Lsp1109I GCAGC 3 cut(s) 478, 503, 721
LweI GCATC 2 cut(s) 1065, 1481
MaeI CTAG 3 cut(s) 60, 231, 681
MaeIII GTNAC 2 cut(s) 458, 1093
MalI GATC 9 cut(s) 48, 864, 868, 989, 1313, 1321, 1378, 1458, 1462
MboI GATC 9 cut(s) 46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
MboII GAAGA 6 cut(s) 35, 386, 560, 587, 648, 1377
MfeI CAATTG 2 cut(s) 654, 1000
MflI RGATCY 1 cut(s) 1376
MhlI GDGCHC 2 cut(s) 368, 1263
MlsI TGGCCA 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 597
MlyI GAGTC 2 cut(s) 752, 922
MnlI CCTC 9 cut(s) 7, 193, 481, 632, 829, 909, 935, 1157, 1197
Mox20I TGGCCA 1 cut(s) 597
MroXI GAANNNNTTC 1 cut(s) 1158
MscI TGGCCA 1 cut(s) 597
MseI TTAA 7 cut(s) 248, 285, 384, 512, 690, 801, 1486
MslI CAYNNNNRTG 3 cut(s) 1071, 1329, 1396
Msp20I TGGCCA 1 cut(s) 597
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 5 cut(s) 355, 536, 782, 860, 939
MunI CAATTG 2 cut(s) 654, 1000
MvaI CCWGG 5 cut(s) 355, 536, 782, 860, 939
MwoI GCNNNNNNNGC 1 cut(s) 488
NcoI CCATGG 1 cut(s) 543
NdeII GATC 9 cut(s) 46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
NlaIII CATG 8 cut(s) 94, 176, 271, 547, 964, 996, 1281, 1433
NlaIV GGNNCC 2 cut(s) 32, 856
NmuCI GTSAC 1 cut(s) 1093
NspI RCATGY 2 cut(s) 271, 1281
PasI CCCWGGG 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 1158
PkrI GCNGC 3 cut(s) 468, 493, 736
PleI GAGTC 2 cut(s) 752, 921
PpsI GAGTC 2 cut(s) 752, 921
Psp6I CCWGG 5 cut(s) 353, 534, 780, 858, 937
PspGI CCWGG 5 cut(s) 353, 534, 780, 858, 937
PspN4I GGNNCC 2 cut(s) 32, 856
PspPI GGNCC 2 cut(s) 357, 641
PstI CTGCAG 1 cut(s) 1359
PsuI RGATCY 1 cut(s) 1376
RsaI GTAC 3 cut(s) 32, 715, 1050
RsaNI GTAC 3 cut(s) 31, 714, 1049
RseI CAYNNNNRTG 3 cut(s) 1071, 1329, 1396
SaqAI TTAA 7 cut(s) 248, 285, 384, 512, 690, 801, 1486
SatI GCNGC 3 cut(s) 467, 492, 735
Sau3AI GATC 9 cut(s) 46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
Sau96I GGNCC 2 cut(s) 357, 641
SchI GAGTC 2 cut(s) 752, 922
ScrFI CCNGG 5 cut(s) 355, 536, 782, 860, 939
SduI GDGCHC 2 cut(s) 368, 1263
SfaNI GCATC 2 cut(s) 1065, 1481
SfcI CTRYAG 1 cut(s) 1355
SmiMI CAYNNNNRTG 3 cut(s) 1071, 1329, 1396
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SpeI ACTAGT 1 cut(s) 230
SspI AATATT 1 cut(s) 499
SspMI CTAG 3 cut(s) 60, 231, 681
StyD4I CCNGG 5 cut(s) 353, 534, 780, 858, 937
StyI CCWWGG 2 cut(s) 360, 543
TaaI ACNGT 4 cut(s) 35, 182, 729, 754
TaqI TCGA 8 cut(s) 45, 145, 701, 865, 1162, 1314, 1426, 1459
TatI WGTACW 1 cut(s) 713
Tru1I TTAA 7 cut(s) 248, 285, 384, 512, 690, 801, 1486
Tru9I TTAA 7 cut(s) 248, 285, 384, 512, 690, 801, 1486
TscAI CASTG 2 cut(s) 828, 1098
TseFI GTSAC 1 cut(s) 1093
TseI GCWGC 3 cut(s) 466, 491, 734
Tsp45I GTSAC 1 cut(s) 1093
TspDTI ATGAA 5 cut(s) 17, 31, 326, 534, 1337
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 2 cut(s) 828, 1098
XapI RAATTY 7 cut(s) 148, 164, 377, 589, 838, 928, 979
XceI RCATGY 2 cut(s) 271, 1281
XmnI GAANNNNTTC 1 cut(s) 1158
XspI CTAG 3 cut(s) 60, 231, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.