pycom08g19970

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0007060
Physical Location & Seq
Forward (+)
19902964 .. 19903853
890 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGTTAGAGACCACTTTACTGCTTAACTTTTTTGCTTGTACTCTCAGGCGGCAACAGGAAGCAGAATTGAAACTGCTTGAAGAAGAGACTTCAAGGAGAGTGGAAGAAGCAATTTGTAGGAAGGTTGAGGAGAGCTTAAACTCTGATGAGATTAAAGTGGAAATACAGAGGCAGTTGGAGGAAGGACGGAAGAAGCTCCTTACTGAAGTGGCAGAGCAACTTGAGAAAGAAAAGGAAGCAGCTCTGATTGAGGCTAGGCGTAAGGAGGAACAAGCTCGAAGAGAAAAAGAAGTGCTGGAAGGGATGCTTGAAGAGAACCGGAGGAGAGTGGAAGAAGCTCAAAGAAGGGAGGCTTTGGAGCAGCAGCGGAGGGAGGAGGAGAGATGCAGGGAGCTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

134

Amino Acids

16.1

Weight (kDa)

5.02

Isoelectric Point (pI)

93.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 19 - 133 2.1e-27 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 367
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 4 cut(s) 70, 80, 93, 311
AluBI AGCT 6 cut(s) 135, 196, 242, 275, 338, 394
AluI AGCT 6 cut(s) 135, 196, 242, 275, 338, 394
Alw26I GTCTC 2 cut(s) 2, 80
ApeKI GCWGC 3 cut(s) 239, 361, 364
BbvI GCAGC 3 cut(s) 251, 373, 376
BcoDI GTCTC 2 cut(s) 2, 80
BfaI CTAG 1 cut(s) 255
BisI GCNGC 4 cut(s) 50, 240, 362, 365
BlsI GCNGC 4 cut(s) 51, 241, 363, 366
BmsI GCATC 2 cut(s) 294, 374
BpuEI CTTGAG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 2
BsaWI WCCGGW 1 cut(s) 318
BseGI GGATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 4 cut(s) 143, 337, 389, 392
BseXI GCAGC 3 cut(s) 251, 373, 376
BsiSI CCGG 1 cut(s) 319
BsmAI GTCTC 2 cut(s) 2, 80
Bso31I GGTCTC 1 cut(s) 2
BspACI CCGC 2 cut(s) 49, 367
BspCNI CTCAG 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 2
Bst6I CTCTTC 3 cut(s) 78, 274, 306
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 309
BstMAI GTCTC 2 cut(s) 2, 80
BstV1I GCAGC 3 cut(s) 251, 373, 376
BtsCI GGATG 1 cut(s) 309
Csp6I GTAC 1 cut(s) 39
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviJI RGCY 8 cut(s) 135, 196, 242, 254, 275, 338, 353, 394
CviKI_1 RGCY 8 cut(s) 135, 196, 242, 254, 275, 338, 353, 394
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 44
Eam1104I CTCTTC 3 cut(s) 78, 274, 306
EarI CTCTTC 3 cut(s) 78, 274, 306
Eco31I GGTCTC 1 cut(s) 2
Eco57I CTGAAG 1 cut(s) 225
FalI AAGNNNNNCTT 4 cut(s) 291, 323, 337, 369
Fnu4HI GCNGC 4 cut(s) 50, 240, 362, 365
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 4 cut(s) 50, 240, 362, 365
FspBI CTAG 1 cut(s) 255
GluI GCNGC 4 cut(s) 50, 240, 362, 365
HapII CCGG 1 cut(s) 319
HpaII CCGG 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 145, 246
HpyAV CCTTC 4 cut(s) 115, 176, 293, 339
HpyCH4V TGCA 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 44
LmnI GCTCC 3 cut(s) 201, 358, 391
LpnPI CCDG 6 cut(s) 31, 41, 281, 332, 373, 380
Lsp1109I GCAGC 3 cut(s) 251, 373, 376
LweI GCATC 2 cut(s) 294, 374
MaeI CTAG 1 cut(s) 255
MboII GAAGA 7 cut(s) 92, 95, 116, 202, 291, 323, 344
MluCI AATT 2 cut(s) 65, 111
MmeI TCCRAC 1 cut(s) 156
MseI TTAA 3 cut(s) 24, 137, 153
MspA1I CMGCKG 1 cut(s) 367
MspI CCGG 1 cut(s) 319
PkrI GCNGC 4 cut(s) 51, 241, 363, 366
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 24, 137, 153
SatI GCNGC 4 cut(s) 50, 240, 362, 365
SetI ASST 7 cut(s) 126, 137, 198, 244, 277, 340, 396
SfaNI GCATC 2 cut(s) 294, 374
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 2 cut(s) 65, 111
SsiI CCGC 2 cut(s) 49, 367
SspMI CTAG 1 cut(s) 255
TaqI TCGA 1 cut(s) 277
TasI AATT 2 cut(s) 65, 111
TatI WGTACW 1 cut(s) 38
TauI GCSGC 1 cut(s) 52
Tru1I TTAA 3 cut(s) 24, 137, 153
Tru9I TTAA 3 cut(s) 24, 137, 153
TseI GCWGC 3 cut(s) 239, 361, 364
TspGWI ACGGA 1 cut(s) 202
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.