Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009495

Physical Location & Seq

Genomic Coordinates Forward (+)

2524903 .. 2526383

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGCCAACCCTCCTCTACAACACTTTGATCAGAGCCCATCTCGGTTTCGGCCAACCCCGCAAGACCCTCCTCCTCTTCATCCACATGCTTGCCCACCAAGCCCCTCCCAACAGCCACACCTTCCCTCCTCTTATCAAAGCCGCCGCCGCCTCCTGTTCCTCCACCTCATCGCCCCGTCTGGGATCCCCGCTTCATACCCAAGTCGTAAAACGCGGCGTTTTGCGCGACCCTTTTATACAGACCTCGTTTGTGAGCTTTTATGCTGAGCTTGGTAAATTGTGCGATGCGCGTAAGGTGTTTGAGGAAATGTCTGAACCATGTGTGGTTGCGTGCAATGCGATGATTGATGGGTTTGGGAAGAATGGGGATATGGGTTCTGCTGTTTTGCTATTTGAAAGCATGCCGGAAAGGGACGTGGTTTCATGGACAAGCGTTATAAACGGGTTTGGGAGAAATGGGTGTCTTAGCGACGGAATTCGGTTTTTTCGGATGATGATGAATCATGAGAATGTGATGGGTTGTTTTGTGAAGCCAAATGAAGCTACTTATGTTAGTGTGCTTTCTTCCTGTGCTAATTTGGGTGGGTGGGGATCTATTTATTGGGGGAAGCAAATACATGGGCATGTTATTAGAAGTGGGATTGAATTGACTGCGTTTTTGGGGACTGCATTGGTCGCTGAATACATGTTCCAGCAAGTGGTAGTTAAAGAAGTTTGTACTTGGAATGCGATGATTTCTGCACTTTCTTTGAATGGTAAAGAGAAGGAGGCTTTGGACTTGTTTGAAAAAATGAAGATGGAGAGGTTGCAGCCTAATGAGGTTACATTTGTCGCAGTTCTTACAGCATGTGCTCGTGGAAAACTGGTGAAGTTTAGTTTGGAATTGTTTAGATCGATGACAAATGATTTCGGGGTTGAGCCGATAATGGAACACTACGGGTGTGTGGTTGACCTCTTGGGCAGAGCAGGGCTGTTTTGGGAGGCAACTGAAGTTATTAAGGGCATGCCTTTCGAGCCTGATGCCTCTGTATTGGGGGCTCTTTTAGGTTCTTGTAAGATTCATGGGACTGCTGAGCTGGGAAATGAAGTTGGTCATGAACTTCTCGAATTGCAGCCACAACACTGTGGGCGGTACGTGGTTTTGTCAAACATTAATGCTGCGAAGGAGAGATGGGATCTTGCTGCAGCTGTGAGGAAAACAATGGTGGTAGCTGGAATTCGGAAAATTCCGGCCTACAGTATGATTGATTTGTGTCTTAGCCATTTAAAGTTGTGTAGAAAAATTGGAATTTCGGAATTTACAATTTTACCTTGCGATTCCAATATGGTTTTAGCAACAAAATATATGGTTGGTCCTGCTTGCTTGAGAACAATTGGCACGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

462

Amino Acids

50.67

Weight (kDa)

8.27

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	106 - 138	1.3e-06	PPR repeat family
PPR	PF01535	109 - 138	2.6e-06	PPR repeat
PPR_2	PF13041	137 - 192	3.7e-06	PPR repeat family
PPR_3	PF13812	237 - 283	7.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	238 - 285	6.8e-12	PPR repeat family
PPR	PF01535	240 - 267	8.2e-08	PPR repeat
E_motif	PF20431	356 - 415	4.6e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10330
fragaria_vesca	FvH4_6g42841
malus_domestica	MD09G1072300.v1.1
prunus_persica	Prupe.3G214500_v2.0.a1
pyrus_communis	pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460
rosa_chinensis	RchiOBHm_Chr2g0158781
rosa_laevigata	RLG00000021112 RLG00000025824
rosa_multiflora	Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091010
rosa_rugosa	Rorug02G0472600
rosa_samantha	Rh2BG550900 Rh2CG521400 Rh2DG560700
rosa_wichuraiana	Rw2G044540 Rw3G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	697
AccII	CGCG	3 cut(s)	213, 225, 289
AciI	CCGC	7 cut(s)	58, 141, 144, 147, 188, 213, 1129
AclWI	GGATC	4 cut(s)	177, 190, 598, 1182
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	5 cut(s)	474, 1215, 1224, 1287, 1295
AcuI	CTGAAG	1 cut(s)	1008
AfaI	GTAC	2 cut(s)	718, 1133
AfiI	CCNNNNNNNGG	2 cut(s)	179, 697
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	395, 644, 751, 785
AjiI	CACGTC	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	4 cut(s)	755, 787, 860, 892
AluBI	AGCT	6 cut(s)	255, 268, 542, 1075, 1187, 1211
AluI	AGCT	6 cut(s)	255, 268, 542, 1075, 1187, 1211
Alw21I	GWGCWC	1 cut(s)	853
AlwI	GGATC	4 cut(s)	177, 190, 598, 1182
AoxI	GGCC	2 cut(s)	49, 1230
ApeKI	GCWGC	5 cut(s)	808, 1111, 1157, 1181, 1184
ApoI	RAATTY	5 cut(s)	474, 1215, 1224, 1287, 1295
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AseI	ATTAAT	1 cut(s)	1152
AspLEI	GCGC	2 cut(s)	225, 289
AspS9I	GGNCC	1 cut(s)	1352
AsuHPI	GGTGA	1 cut(s)	877
AvaII	GGWCC	1 cut(s)	1352
BamHI	GGATCC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	37, 1039
BauI	CACGAG	1 cut(s)	852
Bbv12I	GWGCWC	1 cut(s)	853
BbvI	GCAGC	5 cut(s)	820, 1123, 1144, 1168, 1196
BccI	CCATC	5 cut(s)	45, 341, 508, 790, 1164
BcgI	CGANNNNNNTGC	4 cut(s)	991, 1001, 1025, 1035
BclI	TGATCA	1 cut(s)	27
BfmI	CTRYAG	2 cut(s)	1182, 1234
BisI	GCNGC	9 cut(s)	141, 144, 147, 214, 809, 1112, 1158, 1182, 1185
BlpI	GCTNAGC	2 cut(s)	264, 1071
BlsI	GCNGC	9 cut(s)	142, 145, 148, 215, 810, 1113, 1159, 1183, 1186
Bme18I	GGWCC	1 cut(s)	1352
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	1352
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	2 cut(s)	274, 1009
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
Bpu1102I	GCTNAGC	2 cut(s)	264, 1071
BpuEI	CTTGAG	1 cut(s)	1384
Bsa29I	ATCGAT	1 cut(s)	893
BsaAI	YACGTR	1 cut(s)	1135
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 697
Bse1I	ACTGG	1 cut(s)	867
Bse3DI	GCAATG	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	893
BseGI	GGATG	2 cut(s)	78, 495
BseLI	CCNNNNNNNGG	2 cut(s)	179, 697
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	255, 1062
BseNI	ACTGG	1 cut(s)	867
BseRI	GAGGAG	3 cut(s)	59, 62, 117
BseXI	GCAGC	5 cut(s)	820, 1123, 1144, 1168, 1196
BseYI	CCCAGC	1 cut(s)	1075
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	3 cut(s)	213, 225, 289
BshFI	GGCC	2 cut(s)	51, 1232
BshVI	ATCGAT	1 cut(s)	893
BsiHKAI	GWGCWC	1 cut(s)	853
BsiSI	CCGG	2 cut(s)	404, 1229
BslFI	GGGAC	3 cut(s)	425, 676, 1078
BslI	CCNNNNNNNGG	2 cut(s)	179, 697
BsmFI	GGGAC	3 cut(s)	425, 676, 1078
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	51, 1232
Bsp1286I	GDGCHC	3 cut(s)	37, 853, 1039
Bsp143I	GATC	5 cut(s)	27, 182, 590, 890, 1174
Bsp1720I	GCTNAGC	2 cut(s)	264, 1071
BspACI	CCGC	7 cut(s)	58, 141, 144, 147, 188, 213, 1129
BspANI	GGCC	2 cut(s)	51, 1232
BspCNI	CTCAG	2 cut(s)	256, 1063
BspDI	ATCGAT	1 cut(s)	893
BspFNI	CGCG	3 cut(s)	213, 225, 289
BspHI	TCATGA	2 cut(s)	502, 1093
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	1186
BspPI	GGATC	4 cut(s)	177, 190, 598, 1182
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	867
BssMI	GATC	5 cut(s)	27, 182, 590, 890, 1174
BssSI	CACGAG	1 cut(s)	852
Bst2BI	CACGAG	1 cut(s)	852
Bst4CI	ACNGT	2 cut(s)	1124, 1238
Bst6I	CTCTTC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	1135
BstC8I	GCNNGC	5 cut(s)	90, 331, 401, 1004, 1360
BstDEI	CTNAG	4 cut(s)	264, 464, 1071, 1256
BstF5I	GGATG	2 cut(s)	78, 495
BstFNI	CGCG	3 cut(s)	213, 225, 289
BstHHI	GCGC	2 cut(s)	225, 289
BstKTI	GATC	5 cut(s)	30, 185, 593, 893, 1177
BstMBI	GATC	5 cut(s)	27, 182, 590, 890, 1174
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 98, 146, 222, 335, 674, 1012
BstNSI	RCATGY	6 cut(s)	88, 403, 626, 688, 849, 1006
BstSFI	CTRYAG	2 cut(s)	1182, 1234
BstUI	CGCG	3 cut(s)	213, 225, 289
BstV1I	GCAGC	5 cut(s)	820, 1123, 1144, 1168, 1196
BstX2I	RGATCY	3 cut(s)	182, 590, 1174
BstYI	RGATCY	3 cut(s)	182, 590, 1174
Bsu15I	ATCGAT	1 cut(s)	893
BsuRI	GGCC	2 cut(s)	51, 1232
BsuTUI	ATCGAT	1 cut(s)	893
BtgZI	GCGATG	4 cut(s)	153, 297, 353, 743
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	78, 495
BtsIMutI	CAGTG	1 cut(s)	1120
Cac8I	GCNNGC	5 cut(s)	90, 331, 401, 1004, 1360
CciI	TCATGA	2 cut(s)	502, 1093
CfoI	GCGC	2 cut(s)	225, 289
Cfr13I	GGNCC	1 cut(s)	1352
ClaI	ATCGAT	1 cut(s)	893
Csp6I	GTAC	2 cut(s)	717, 1132
CviQI	GTAC	2 cut(s)	717, 1132
DdeI	CTNAG	4 cut(s)	264, 464, 1071, 1256
DpnI	GATC	5 cut(s)	29, 184, 592, 892, 1176
DpnII	GATC	5 cut(s)	27, 182, 590, 890, 1174
DraI	TTTAAA	1 cut(s)	1266
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco24I	GRGCYC	2 cut(s)	37, 1039
Eco47I	GGWCC	1 cut(s)	1352
Eco57I	CTGAAG	1 cut(s)	1008
EcoRI	GAATTC	2 cut(s)	474, 1215
EcoT38I	GRGCYC	2 cut(s)	37, 1039
FaqI	GGGAC	3 cut(s)	425, 676, 1078
FauI	CCCGC	2 cut(s)	65, 195
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	9 cut(s)	141, 144, 147, 214, 809, 1112, 1158, 1182, 1185
FokI	GGATG	2 cut(s)	65, 502
FriOI	GRGCYC	2 cut(s)	37, 1039
Fsp4HI	GCNGC	9 cut(s)	141, 144, 147, 214, 809, 1112, 1158, 1182, 1185
GlaI	GCGC	2 cut(s)	224, 288
GluI	GCNGC	9 cut(s)	141, 144, 147, 214, 809, 1112, 1158, 1182, 1185
GsaI	CCCAGC	1 cut(s)	1079
HaeIII	GGCC	2 cut(s)	51, 1232
HapII	CCGG	2 cut(s)	404, 1229
HhaI	GCGC	2 cut(s)	225, 289
Hin6I	GCGC	2 cut(s)	223, 287
HinP1I	GCGC	2 cut(s)	223, 287
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	3 cut(s)	499, 1057, 1316
HpaII	CCGG	2 cut(s)	404, 1229
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	1 cut(s)	949
Hpy188I	TCNGA	5 cut(s)	32, 313, 489, 1221, 1294
Hpy188III	TCNNGA	3 cut(s)	503, 1094, 1103
Hpy8I	GTNNAC	1 cut(s)	949
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	130, 757, 1156
HpyCH4III	ACNGT	2 cut(s)	1124, 1238
HpyCH4IV	ACGT	2 cut(s)	414, 1134
HpyCH4V	TGCA	6 cut(s)	333, 668, 740, 808, 1111, 1184
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 98, 146, 222, 335, 674, 1012
HpyF3I	CTNAG	4 cut(s)	264, 464, 1071, 1256
HpySE526I	ACGT	2 cut(s)	414, 1134
HspAI	GCGC	2 cut(s)	223, 287
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	27, 182, 590, 890, 1174
Lsp1109I	GCAGC	5 cut(s)	820, 1123, 1144, 1168, 1196
LweI	GCATC	2 cut(s)	274, 1009
MaeII	ACGT	2 cut(s)	414, 1134
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	5 cut(s)	29, 184, 592, 892, 1176
MboI	GATC	5 cut(s)	27, 182, 590, 890, 1174
MboII	GAAGA	4 cut(s)	67, 370, 555, 805
MfeI	CAATTG	1 cut(s)	1371
MflI	RGATCY	3 cut(s)	182, 590, 1174
MhlI	GDGCHC	3 cut(s)	37, 853, 1039
MseI	TTAA	4 cut(s)	705, 996, 1152, 1265
MslI	CAYNNNNRTG	3 cut(s)	83, 507, 621
MspA1I	CMGCKG	1 cut(s)	1187
MspI	CCGG	2 cut(s)	404, 1229
MunI	CAATTG	1 cut(s)	1371
Mva1269I	GAATGC	1 cut(s)	730
MvnI	CGCG	3 cut(s)	213, 225, 289
MwoI	GCNNNNNNNGC	7 cut(s)	57, 98, 146, 222, 335, 674, 1012
NdeII	GATC	5 cut(s)	27, 182, 590, 890, 1174
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	6 cut(s)	88, 403, 626, 688, 849, 1006
PaeI	GCATGC	2 cut(s)	403, 1006
PagI	TCATGA	2 cut(s)	502, 1093
PciI	ACATGT	1 cut(s)	684
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	3 cut(s)	499, 1057, 1316
PflMI	CCANNNNNTGG	1 cut(s)	697
PkrI	GCNGC	9 cut(s)	142, 145, 148, 215, 810, 1113, 1159, 1183, 1186
Ppu21I	YACGTR	1 cut(s)	1135
PscI	ACATGT	1 cut(s)	684
PshBI	ATTAAT	1 cut(s)	1152
PsiI	TTATAA	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	1075
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	1352
PstI	CTGCAG	1 cut(s)	1186
PsuI	RGATCY	3 cut(s)	182, 590, 1174
PvuII	CAGCTG	1 cut(s)	1187
RsaI	GTAC	2 cut(s)	718, 1133
RsaNI	GTAC	2 cut(s)	717, 1132
RseI	CAYNNNNRTG	3 cut(s)	83, 507, 621
SaqAI	TTAA	4 cut(s)	705, 996, 1152, 1265
SatI	GCNGC	9 cut(s)	141, 144, 147, 214, 809, 1112, 1158, 1182, 1185
Sau3AI	GATC	5 cut(s)	27, 182, 590, 890, 1174
Sau96I	GGNCC	1 cut(s)	1352
SduI	GDGCHC	3 cut(s)	37, 853, 1039
SfaNI	GCATC	2 cut(s)	274, 1009
SfcI	CTRYAG	2 cut(s)	1182, 1234
SinI	GGWCC	1 cut(s)	1352
SmiMI	CAYNNNNRTG	3 cut(s)	83, 507, 621
SmlI	CTYRAG	1 cut(s)	1363
SmoI	CTYRAG	1 cut(s)	1363
SphI	GCATGC	2 cut(s)	403, 1006
SsiI	CCGC	7 cut(s)	58, 141, 144, 147, 188, 213, 1129
TaaI	ACNGT	2 cut(s)	1124, 1238
TaiI	ACGT	2 cut(s)	417, 1137
TaqI	TCGA	3 cut(s)	893, 1011, 1104
TatI	WGTACW	1 cut(s)	716
TauI	GCSGC	4 cut(s)	143, 146, 149, 216
TfiI	GAWTC	3 cut(s)	499, 1057, 1316
Tru1I	TTAA	4 cut(s)	705, 996, 1152, 1265
Tru9I	TTAA	4 cut(s)	705, 996, 1152, 1265
TscAI	CASTG	1 cut(s)	1127
TseI	GCWGC	5 cut(s)	808, 1111, 1157, 1181, 1184
TspDTI	ATGAA	9 cut(s)	67, 182, 411, 512, 552, 806, 1049, 1098, 1110
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	1127
Van91I	CCANNNNNTGG	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	1352
VspI	ATTAAT	1 cut(s)	1152
XapI	RAATTY	5 cut(s)	474, 1215, 1224, 1287, 1295
XceI	RCATGY	6 cut(s)	88, 403, 626, 688, 849, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.