pycom09g08400

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0008700
Physical Location & Seq
Forward (+)
6431622 .. 6436739
5118 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1188 bp
ATGTCGTTCGCAGCAACAGCAGCGACAACGATGACGACATGCCACTTCGTTACGCTTCGAATTCAGTGCACTGATTCCAAGCCCAGAACTGGTTTCGGAAGCAAAACCAACAGCAAGAACAAGAACAGGAACAAGAACAACCTCAGCCAGCAGGAATCAACTACCAAACGGTCTGGTGGCGTTCCTACTCAGGCACCCGGGTTAAGTTCTCGGTTCGATGGAAAGGTTAAGAGAAACCCTGCTGAGCTTGAGTTTGAGGAACGTCTAGCAGCAGTCAGAAGTTCAGCACTTGAGCAGAAGAAGGTAGTGGAGAAAAAGGAATTTGGGCCAATTGACTATGATGCACCTGTTGAGTTGGAGAAAACGGATGAGAAAAAAATTGGACTCGGTGCACAGATTGGAGTAGGTGTAGCTGTAGTGGTCTTTGGTTTGGTTTTTGCTCTTGGAGACTTTCTTCCGTCTGGAAGTTTGAGTCCTACTGAGGATACTGCAGCAACCGCCAATAAACTGTCCGAAGAAGAGAAAGCGTCACTTCAGACTAGGCTGAAAGAATATGAAGCAACGCTTAGTAACTCCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCGGTAACCTTAGCAGAATTAGGAGAATATACACGGGCTTCAACTCTGCTTCAAGACTTGATTAAGGAGAAACCAAGTGATCCTGAAGTTTTTCGTTTGCTTGGAGAAGTTAAATACGAACTCAAGGATTTTGAAGGAAGTGCTGCTGCATTTAAGGTTTCTTCATCGATGTCTAAAGATCTCAAATTTGAAGTTCTGCGTGGCCTTACGAATGCATTACTTGCTGCTAAGAAACCAGATGAGGCTGTTCAATTCCTTCTTGCCTCTCGTGAACGTATGAATGTGGACAAGCCAGATGCAAAGGCTGGAAGTAGTGCGACTGAAACAAATTCACAGGTGGACCCTATTCAAGTCGAATTACTTCTTGGAAAAGCCTATTCAGATTGGGGCCATATCAGTGATGCTGTTTCTGTCTATGACCGGCTCATCTCTAGTCATCCAAATGACTTCCGTGGTTACTTGGCCAAGGGAATTATTTTGAGAGAAAATGGTAAAGCTGGAGAAGCGGAGAGGATGTTTATACAGGCACGGTTCTTTGCACCGGATAAAGCCAAAGCATTTGTAGACAGATATTCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

396

Amino Acids

43.06

Weight (kDa)

7.65

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 185 - 237 8.7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 1170
AciI CCGC 3 cut(s) 498, 608, 1112
AclWI GGATC 2 cut(s) 578, 680
AcoI YGGCCR 1 cut(s) 1068
AcsI RAATTY 4 cut(s) 60, 320, 791, 934
AcuI CTGAAG 2 cut(s) 518, 711
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 7 cut(s) 648, 659, 740, 797, 857, 956, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 954, 986
AluBI AGCT 4 cut(s) 247, 413, 605, 1103
AluI AGCT 4 cut(s) 247, 413, 605, 1103
Alw21I GWGCWC 2 cut(s) 71, 394
Alw26I GTCTC 1 cut(s) 441
Alw44I GTGCAC 2 cut(s) 67, 390
AlwI GGATC 2 cut(s) 578, 680
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 4 cut(s) 326, 808, 994, 1068
ApaLI GTGCAC 2 cut(s) 67, 390
ApeKI GCWGC 8 cut(s) 11, 20, 269, 491, 605, 749, 752, 830
ApoI RAATTY 4 cut(s) 60, 320, 791, 934
Asp700I GAANNNNTTC 2 cut(s) 696, 966
AspS9I GGNCC 3 cut(s) 326, 946, 994
AsuC2I CCSGG 2 cut(s) 198, 199
AsuII TTCGAA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 946
BaeGI GKGCMC 2 cut(s) 71, 394
BalI TGGCCA 1 cut(s) 1070
BanI GGYRCC 1 cut(s) 193
BauI CACGAG 1 cut(s) 873
Bbv12I GWGCWC 2 cut(s) 71, 394
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 8 cut(s) 23, 32, 281, 503, 592, 736, 739, 817
BccI CCATC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciVI GTATCC 1 cut(s) 478
BcnI CCSGG 2 cut(s) 198, 199
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 3 cut(s) 266, 540, 1038
BfmI CTRYAG 2 cut(s) 414, 489
BfuI GTATCC 1 cut(s) 478
BglII AGATCT 1 cut(s) 784
BisI GCNGC 8 cut(s) 12, 21, 270, 492, 606, 750, 753, 831
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 8 cut(s) 13, 22, 271, 493, 607, 751, 754, 832
Bme1390I CCNGG 2 cut(s) 198, 199
Bme18I GGWCC 1 cut(s) 946
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 326, 946, 994
BmiI GGNNCC 3 cut(s) 195, 948, 995
BmrFI CCNGG 2 cut(s) 198, 199
BmsI GCATC 3 cut(s) 331, 892, 997
BpmI CTGGAG 1 cut(s) 1125
Bpu10I CCTNAGC 2 cut(s) 143, 616
Bpu1102I GCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 4 cut(s) 269, 311, 617, 713
BpuMI CCSGG 2 cut(s) 198, 199
Bsa29I ATCGAT 1 cut(s) 773
BsaJI CCNNGG 3 cut(s) 197, 1057, 1071
BsaWI WCCGGW 1 cut(s) 1147
BsaXI ACNNNNNCTCC 6 cut(s) 393, 423, 594, 624, 1106, 1136
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 1026
Bse1I ACTGG 1 cut(s) 94
BseCI ATCGAT 1 cut(s) 773
BseDI CCNNGG 3 cut(s) 197, 1057, 1071
BseGI GGATG 3 cut(s) 373, 1042, 1125
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 4 cut(s) 157, 203, 234, 471
BseNI ACTGG 1 cut(s) 94
BseSI GKGCMC 2 cut(s) 71, 394
BseXI GCAGC 8 cut(s) 23, 32, 281, 503, 592, 736, 739, 817
BshFI GGCC 4 cut(s) 328, 810, 996, 1070
BshNI GGYRCC 1 cut(s) 193
BshVI ATCGAT 1 cut(s) 773
BsiHKAI GWGCWC 2 cut(s) 71, 394
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 3 cut(s) 198, 1027, 1148
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 823
BsnI GGCC 4 cut(s) 328, 810, 996, 1070
BsoBI CYCGRG 1 cut(s) 197
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 71, 394
Bsp143I GATC 3 cut(s) 583, 685, 784
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 3 cut(s) 498, 608, 1112
BspANI GGCC 4 cut(s) 328, 810, 996, 1070
BspCNI CTCAG 4 cut(s) 156, 202, 235, 472
BspDI ATCGAT 1 cut(s) 773
BspLI GGNNCC 3 cut(s) 195, 948, 995
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 2 cut(s) 578, 680
BspT104I TTCGAA 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 1026
BsrI ACTGG 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 3 cut(s) 197, 1057, 1071
BssMI GATC 3 cut(s) 583, 685, 784
BssSI CACGAG 1 cut(s) 873
BssT1I CCWWGG 1 cut(s) 1071
Bst2BI CACGAG 1 cut(s) 873
Bst4CI ACNGT 3 cut(s) 171, 510, 1137
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 1 cut(s) 827
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 7 cut(s) 143, 189, 243, 480, 566, 616, 834
BstDSI CCRYGG 1 cut(s) 1057
BstEII GGTNACC 1 cut(s) 610
BstF5I GGATG 3 cut(s) 373, 1042, 1125
BstKTI GATC 3 cut(s) 586, 688, 787
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 3 cut(s) 583, 685, 784
BstMWI GCNNNNNNNGC 5 cut(s) 17, 20, 497, 827, 1109
BstNSI RCATGY 1 cut(s) 42
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 196, 197
BstSFI CTRYAG 2 cut(s) 414, 489
BstSLI GKGCMC 2 cut(s) 71, 394
BstV1I GCAGC 8 cut(s) 23, 32, 281, 503, 592, 736, 739, 817
BstX2I RGATCY 2 cut(s) 583, 784
BstYI RGATCY 2 cut(s) 583, 784
Bsu15I ATCGAT 1 cut(s) 773
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 4 cut(s) 328, 810, 996, 1070
BsuTUI ATCGAT 1 cut(s) 773
BtgI CCRYGG 1 cut(s) 1057
BtsCI GGATG 3 cut(s) 373, 1042, 1125
BtsIMutI CAGTG 3 cut(s) 69, 71, 1009
Cac8I GCNNGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 1026
Cfr13I GGNCC 3 cut(s) 326, 946, 994
Cfr9I CCCGGG 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 773
CseI GACGC 1 cut(s) 516
CviAII CATG 1 cut(s) 39
DdeI CTNAG 7 cut(s) 143, 189, 243, 480, 566, 616, 834
DpnI GATC 3 cut(s) 585, 687, 786
DpnII GATC 3 cut(s) 583, 685, 784
EaeI YGGCCR 1 cut(s) 1068
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 1071
Eco47I GGWCC 1 cut(s) 946
Eco57I CTGAAG 2 cut(s) 518, 711
Eco88I CYCGRG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 610
EcoO65I GGTNACC 1 cut(s) 610
EcoRI GAATTC 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 1071
EcoT22I ATGCAT 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 1071
FaeI CATG 1 cut(s) 42
FaiI YATR 8 cut(s) 40, 339, 555, 636, 884, 999, 1023, 1127
FalI AAGNNNNNCTT 4 cut(s) 516, 548, 549, 581
FatI CATG 1 cut(s) 38
FblI GTMKAC 1 cut(s) 1170
Fnu4HI GCNGC 8 cut(s) 12, 21, 270, 492, 606, 750, 753, 831
FokI GGATG 3 cut(s) 380, 1029, 1132
Fsp4HI GCNGC 8 cut(s) 12, 21, 270, 492, 606, 750, 753, 831
FspBI CTAG 3 cut(s) 266, 540, 1038
GluI GCNGC 8 cut(s) 12, 21, 270, 492, 606, 750, 753, 831
GsuI CTGGAG 1 cut(s) 1125
HaeIII GGCC 4 cut(s) 328, 810, 996, 1070
HapII CCGG 3 cut(s) 198, 1027, 1148
HgaI GACGC 1 cut(s) 516
Hin1II CATG 1 cut(s) 42
HinfI GANTC 4 cut(s) 74, 155, 384, 472
HpaII CCGG 3 cut(s) 198, 1027, 1148
Hpy166II GTNNAC 6 cut(s) 69, 392, 878, 892, 946, 1171
Hpy188I TCNGA 5 cut(s) 98, 278, 514, 537, 988
Hpy188III TCNNGA 6 cut(s) 462, 596, 659, 689, 875, 1182
Hpy8I GTNNAC 6 cut(s) 69, 392, 878, 892, 946, 1171
HpyAV CCTTC 3 cut(s) 295, 734, 872
HpyCH4III ACNGT 3 cut(s) 171, 510, 1137
HpyCH4IV ACGT 2 cut(s) 262, 880
HpyCH4V TGCA 8 cut(s) 69, 344, 392, 491, 755, 821, 905, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 20, 497, 827, 1109
HpyF3I CTNAG 7 cut(s) 143, 189, 243, 480, 566, 616, 834
HpySE526I ACGT 2 cut(s) 262, 880
Hsp92II CATG 1 cut(s) 42
Kzo9I GATC 3 cut(s) 583, 685, 784
LmnI GCTCC 1 cut(s) 602
Lsp1109I GCAGC 8 cut(s) 23, 32, 281, 503, 592, 736, 739, 817
LweI GCATC 3 cut(s) 331, 892, 997
MaeI CTAG 3 cut(s) 266, 540, 1038
MaeII ACGT 2 cut(s) 262, 880
MaeIII GTNAC 5 cut(s) 49, 528, 569, 610, 1061
MalI GATC 3 cut(s) 585, 687, 786
MboI GATC 3 cut(s) 583, 685, 784
MboII GAAGA 5 cut(s) 310, 446, 527, 530, 759
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 2 cut(s) 583, 784
MhlI GDGCHC 2 cut(s) 71, 394
MlsI TGGCCA 1 cut(s) 1070
MluNI TGGCCA 1 cut(s) 1070
MlyI GAGTC 2 cut(s) 378, 481
MmeI TCCRAC 2 cut(s) 336, 611
MnlI CCTC 7 cut(s) 152, 250, 475, 592, 841, 880, 1110
Mox20I TGGCCA 1 cut(s) 1070
Mph1103I ATGCAT 1 cut(s) 823
MroXI GAANNNNTTC 2 cut(s) 696, 966
MscI TGGCCA 1 cut(s) 1070
MseI TTAA 5 cut(s) 203, 228, 669, 717, 759
MslI CAYNNNNRTG 2 cut(s) 1002, 1047
Msp20I TGGCCA 1 cut(s) 1070
MspI CCGG 3 cut(s) 198, 1027, 1148
MspR9I CCNGG 2 cut(s) 198, 199
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 823
MwoI GCNNNNNNNGC 5 cut(s) 17, 20, 497, 827, 1109
NciI CCSGG 2 cut(s) 198, 199
NdeII GATC 3 cut(s) 583, 685, 784
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 3 cut(s) 195, 948, 995
NmuCI GTSAC 1 cut(s) 528
NsiI ATGCAT 1 cut(s) 823
NspI RCATGY 1 cut(s) 42
NspV TTCGAA 1 cut(s) 58
PctI GAATGC 1 cut(s) 823
PdmI GAANNNNTTC 2 cut(s) 696, 966
PfeI GAWTC 2 cut(s) 74, 155
PkrI GCNGC 8 cut(s) 13, 22, 271, 493, 607, 751, 754, 832
PleI GAGTC 2 cut(s) 378, 480
PpsI GAGTC 2 cut(s) 378, 480
PspEI GGTNACC 1 cut(s) 610
PspN4I GGNNCC 3 cut(s) 195, 948, 995
PspPI GGNCC 3 cut(s) 326, 946, 994
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 583, 784
RseI CAYNNNNRTG 2 cut(s) 1002, 1047
SaqAI TTAA 5 cut(s) 203, 228, 669, 717, 759
SatI GCNGC 8 cut(s) 12, 21, 270, 492, 606, 750, 753, 831
Sau3AI GATC 3 cut(s) 583, 685, 784
Sau96I GGNCC 3 cut(s) 326, 946, 994
SchI GAGTC 2 cut(s) 378, 481
ScrFI CCNGG 2 cut(s) 198, 199
SduI GDGCHC 2 cut(s) 71, 394
SfaNI GCATC 3 cut(s) 331, 892, 997
SfcI CTRYAG 2 cut(s) 414, 489
SfuI TTCGAA 1 cut(s) 58
SinI GGWCC 1 cut(s) 946
SmaI CCCGGG 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 1002, 1047
SmlI CTYRAG 4 cut(s) 248, 290, 596, 728
SmoI CTYRAG 4 cut(s) 248, 290, 596, 728
SsiI CCGC 3 cut(s) 498, 608, 1112
SspMI CTAG 3 cut(s) 266, 540, 1038
StyD4I CCNGG 2 cut(s) 196, 197
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 3 cut(s) 171, 510, 1137
TaiI ACGT 2 cut(s) 265, 883
TaqI TCGA 4 cut(s) 58, 216, 773, 960
TfiI GAWTC 2 cut(s) 74, 155
Tru1I TTAA 5 cut(s) 203, 228, 669, 717, 759
Tru9I TTAA 5 cut(s) 203, 228, 669, 717, 759
TscAI CASTG 3 cut(s) 71, 76, 1009
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 8 cut(s) 11, 20, 269, 491, 605, 749, 752, 830
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 3 cut(s) 570, 759, 899
TspGWI ACGGA 3 cut(s) 380, 447, 1046
TspMI CCCGGG 1 cut(s) 197
TspRI CASTG 3 cut(s) 71, 76, 1009
VneI GTGCAC 2 cut(s) 67, 390
VpaK11BI GGWCC 1 cut(s) 946
XapI RAATTY 4 cut(s) 60, 320, 791, 934
XceI RCATGY 1 cut(s) 42
XmaI CCCGGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 1170
XmnI GAANNNNTTC 2 cut(s) 696, 966
XspI CTAG 3 cut(s) 266, 540, 1038
Zsp2I ATGCAT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.