Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Forward (+)

6810529 .. 6811313

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCCACGAGGTTGATACGGAAGGCCATAGTTTCTGCAGCGTCGTCGGGATCGATCCCGGCGGCGTCGTTTCGTTACGTCTGCGTCCGGGCTATGGCGTCGGAGGCCCAGGCCCAGCAGGTGGACCTCAAGGCCCGAGACAAAACGGACATCAAAACCTTCTCAATCTACCGGTGGAACCCGGACAACCCGAAGAAGCCGGAGCTCCTGAGATGGGTTCTGGTCCTGAGCTGCGGGCCCATGGTACTCGACGCCCTCATCAAGATCAAGAACGAGATGGACCCCACTCTCACCTTCTGGCGATCTTGCCGGGAAGGGATCTGCGGCTCCTGCGCCATGAACATCGACGGCAGCAACGGCCTGGCCTGCCTGACGAAGATAGCGCCGTCGGAGGCAGGCTCCTCGATGATCACGCCGCTGCTGCACATGTTTGTGATCAAGGACCTGGTGGTGGATATGACGAATTTCTACAACCAGTACAAGAGCATCGAGCCAAGGCTGAAGCGGAAGACCCCGGCGGCGGAGTTGGATGGGAAGCAAAATTTGCAGCGAAACCCAGATGAAATCAAAGAAAACCTATGCGAAATCTCAGAGAAGTTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

202

Amino Acids

22.48

Weight (kDa)

8.96

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	53 - 157	2.2e-29	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	109
Acc36I	ACCTGC	1 cut(s)	109
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	7 cut(s)	62, 234, 324, 416, 505, 518, 521
AclWI	GGATC	3 cut(s)	49, 58, 326
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	463, 541
AcuI	CTGAAG	1 cut(s)	521
AcyI	GRCGYC	3 cut(s)	65, 98, 252
AfaI	GTAC	2 cut(s)	246, 479
AfiI	CCNNNNNNNGG	5 cut(s)	94, 121, 214, 451, 520
AflIII	ACRYGT	1 cut(s)	426
AgeI	ACCGGT	1 cut(s)	171
AjnI	CCWGG	3 cut(s)	108, 360, 444
AluBI	AGCT	2 cut(s)	205, 231
AluI	AGCT	2 cut(s)	205, 231
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	3 cut(s)	49, 58, 326
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	8 cut(s)	3, 24, 105, 111, 132, 236, 358, 363
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	6 cut(s)	38, 231, 351, 418, 421, 547
ApoI	RAATTY	2 cut(s)	463, 541
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	2 cut(s)	335, 385
AspS9I	GGNCC	9 cut(s)	106, 112, 124, 133, 223, 236, 237, 280, 442
AsuC2I	CCSGG	5 cut(s)	59, 89, 182, 311, 515
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	4 cut(s)	124, 223, 280, 442
BaeGI	GKGCMC	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	207, 240
BauI	CACGAG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	6 cut(s)	50, 218, 363, 405, 408, 559
BccI	CCATC	3 cut(s)	207, 271, 524
BceAI	ACGGC	3 cut(s)	364, 370, 373
BcgI	CGANNNNNNTGC	4 cut(s)	27, 61, 384, 418
BciT130I	CCWGG	3 cut(s)	110, 362, 446
BclI	TGATCA	2 cut(s)	408, 435
BcnI	CCSGG	5 cut(s)	59, 89, 182, 311, 515
BcoDI	GTCTC	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	109
Bme1390I	CCNGG	8 cut(s)	59, 89, 110, 182, 311, 362, 446, 515
Bme18I	GGWCC	4 cut(s)	124, 223, 280, 442
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	9 cut(s)	106, 112, 124, 133, 223, 236, 237, 280, 442
BmiI	GGNNCC	5 cut(s)	179, 238, 282, 328, 400
BmrFI	CCNGG	8 cut(s)	59, 89, 110, 182, 311, 362, 446, 515
BmsI	GCATC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	515
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	5 cut(s)	59, 89, 182, 311, 515
Bsa29I	ATCGAT	1 cut(s)	53
BsaHI	GRCGYC	3 cut(s)	65, 98, 252
BsaJI	CCNNGG	4 cut(s)	108, 240, 494, 513
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 121, 214, 451, 520
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	475
BseBI	CCWGG	3 cut(s)	110, 362, 446
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	4 cut(s)	108, 240, 494, 513
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	5 cut(s)	94, 121, 214, 451, 520
BseMII	CTCAG	3 cut(s)	200, 218, 603
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	391
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	6 cut(s)	50, 218, 363, 405, 408, 559
BseYI	CCCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	407
BshFI	GGCC	8 cut(s)	5, 26, 107, 113, 134, 238, 360, 365
BshTI	ACCGGT	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	7 cut(s)	59, 88, 172, 182, 200, 310, 515
BslI	CCNNNNNNNGG	5 cut(s)	94, 121, 214, 451, 520
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	8 cut(s)	5, 26, 107, 113, 134, 238, 360, 365
BsoBI	CYCGRG	1 cut(s)	135
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	207, 240
Bsp143I	GATC	7 cut(s)	50, 54, 264, 302, 318, 408, 435
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	7 cut(s)	62, 234, 324, 416, 505, 518, 521
BspANI	GGCC	8 cut(s)	5, 26, 107, 113, 134, 238, 360, 365
BspCNI	CTCAG	3 cut(s)	201, 219, 602
BspDI	ATCGAT	1 cut(s)	53
BspLI	GGNNCC	5 cut(s)	179, 238, 282, 328, 400
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	3 cut(s)	49, 58, 326
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	4 cut(s)	108, 240, 494, 513
BssMI	GATC	7 cut(s)	50, 54, 264, 302, 318, 408, 435
BssNI	GRCGYC	3 cut(s)	65, 98, 252
BssSI	CACGAG	1 cut(s)	7
BssT1I	CCWWGG	2 cut(s)	240, 494
Bst2BI	CACGAG	1 cut(s)	7
Bst2UI	CCWGG	3 cut(s)	110, 362, 446
BstACI	GRCGYC	3 cut(s)	65, 98, 252
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	236, 367, 397
BstDEI	CTNAG	3 cut(s)	209, 227, 589
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	535
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	2 cut(s)	335, 385
BstKTI	GATC	7 cut(s)	53, 57, 267, 305, 321, 411, 438
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	7 cut(s)	50, 54, 264, 302, 318, 408, 435
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 330, 357, 366, 421, 544
BstNI	CCWGG	3 cut(s)	110, 362, 446
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	8 cut(s)	57, 87, 108, 180, 309, 360, 444, 513
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	6 cut(s)	50, 218, 363, 405, 408, 559
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
Bsu15I	ATCGAT	1 cut(s)	53
BsuRI	GGCC	8 cut(s)	5, 26, 107, 113, 134, 238, 360, 365
BsuTUI	ATCGAT	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	535
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	3 cut(s)	236, 367, 397
CfoI	GCGC	2 cut(s)	335, 385
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	9 cut(s)	106, 112, 124, 133, 223, 236, 237, 280, 442
ClaI	ATCGAT	1 cut(s)	53
CseI	GACGC	5 cut(s)	30, 54, 73, 87, 260
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	245, 478
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	3 cut(s)	241, 337, 427
CviQI	GTAC	2 cut(s)	245, 478
DdeI	CTNAG	3 cut(s)	209, 227, 589
DpnI	GATC	7 cut(s)	52, 56, 266, 304, 320, 410, 437
DpnII	GATC	7 cut(s)	50, 54, 264, 302, 318, 408, 435
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	240, 494
Eco24I	GRGCYC	2 cut(s)	207, 240
Eco47I	GGWCC	4 cut(s)	124, 223, 280, 442
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	3 cut(s)	108, 360, 444
EcoT14I	CCWWGG	2 cut(s)	240, 494
EcoT38I	GRGCYC	2 cut(s)	207, 240
ErhI	CCWWGG	2 cut(s)	240, 494
FaeI	CATG	3 cut(s)	244, 340, 430
FaiI	YATR	8 cut(s)	29, 95, 242, 338, 428, 458, 580, 604
FatI	CATG	3 cut(s)	240, 336, 426
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	2 cut(s)	408, 435
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	2 cut(s)	207, 240
GlaI	GCGC	2 cut(s)	334, 384
GsaI	CCCAGC	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	8 cut(s)	5, 26, 107, 113, 134, 238, 360, 365
HapII	CCGG	7 cut(s)	59, 88, 172, 182, 200, 310, 515
HgaI	GACGC	5 cut(s)	30, 54, 73, 87, 260
HhaI	GCGC	2 cut(s)	335, 385
Hin1I	GRCGYC	3 cut(s)	65, 98, 252
Hin1II	CATG	3 cut(s)	244, 340, 430
Hin6I	GCGC	2 cut(s)	333, 383
HinP1I	GCGC	2 cut(s)	333, 383
HpaII	CCGG	7 cut(s)	59, 88, 172, 182, 200, 310, 515
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	124, 600
Hpy188I	TCNGA	3 cut(s)	103, 391, 592
Hpy188III	TCNNGA	5 cut(s)	48, 208, 226, 262, 268
Hpy8I	GTNNAC	2 cut(s)	124, 600
Hpy99I	CGWCG	7 cut(s)	46, 49, 70, 103, 254, 350, 391
HpyAV	CCTTC	4 cut(s)	16, 169, 304, 308
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	38, 424, 547
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 330, 357, 366, 421, 544
HpyF3I	CTNAG	3 cut(s)	209, 227, 589
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	3 cut(s)	65, 98, 252
Hsp92II	CATG	3 cut(s)	244, 340, 430
HspAI	GCGC	2 cut(s)	333, 383
Ksp22I	TGATCA	2 cut(s)	408, 435
Kzo9I	GATC	7 cut(s)	50, 54, 264, 302, 318, 408, 435
LmnI	GCTCC	4 cut(s)	202, 210, 332, 404
Lsp1109I	GCAGC	6 cut(s)	50, 218, 363, 405, 408, 559
LweI	GCATC	1 cut(s)	495
MabI	ACCWGGT	1 cut(s)	444
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	7 cut(s)	52, 56, 266, 304, 320, 410, 437
MboI	GATC	7 cut(s)	50, 54, 264, 302, 318, 408, 435
MboII	GAAGA	3 cut(s)	205, 388, 520
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	207, 240
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	463, 541
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	81, 369, 507
MnlI	CCTC	6 cut(s)	3, 97, 137, 266, 385, 412
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	7 cut(s)	59, 88, 172, 182, 200, 310, 515
MspR9I	CCNGG	8 cut(s)	59, 89, 110, 182, 311, 362, 446, 515
MvaI	CCWGG	3 cut(s)	110, 362, 446
MwoI	GCNNNNNNNGC	6 cut(s)	104, 330, 357, 366, 421, 544
NciI	CCSGG	5 cut(s)	59, 89, 182, 311, 515
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	7 cut(s)	50, 54, 264, 302, 318, 408, 435
NlaIII	CATG	3 cut(s)	244, 340, 430
NlaIV	GGNNCC	5 cut(s)	179, 238, 282, 328, 400
NspI	RCATGY	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	109
PciI	ACATGT	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	121
PinAI	ACCGGT	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	3 cut(s)	108, 360, 444
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	3 cut(s)	108, 360, 444
PspN4I	GGNNCC	5 cut(s)	179, 238, 282, 328, 400
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	9 cut(s)	106, 112, 124, 133, 223, 236, 237, 280, 442
PspPPI	RGGWCCY	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	2 cut(s)	246, 479
RsaNI	GTAC	2 cut(s)	245, 478
RseI	CAYNNNNRTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	207
Sau3AI	GATC	7 cut(s)	50, 54, 264, 302, 318, 408, 435
Sau96I	GGNCC	9 cut(s)	106, 112, 124, 133, 223, 236, 237, 280, 442
ScrFI	CCNGG	8 cut(s)	59, 89, 110, 182, 311, 362, 446, 515
SduI	GDGCHC	2 cut(s)	207, 240
SexAI	ACCWGGT	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	495
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	4 cut(s)	124, 223, 280, 442
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	463, 541
SsiI	CCGC	7 cut(s)	62, 234, 324, 416, 505, 518, 521
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	8 cut(s)	57, 87, 108, 180, 309, 360, 444, 513
StyI	CCWWGG	2 cut(s)	240, 494
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	5 cut(s)	53, 249, 345, 404, 489
TasI	AATT	2 cut(s)	463, 541
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	4 cut(s)	65, 327, 418, 521
TseI	GCWGC	6 cut(s)	38, 231, 351, 418, 421, 547
TspDTI	ATGAA	2 cut(s)	353, 576
TspGWI	ACGGA	2 cut(s)	34, 161
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	4 cut(s)	124, 223, 280, 442
XapI	RAATTY	2 cut(s)	463, 541
XceI	RCATGY	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.