Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003675

Physical Location & Seq

Genomic Coordinates Forward (+)

7788714 .. 7791074

Gene Structure 2361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTGCTCTTCGAAAATCCCCCTGGAAACAAACACCAACGTTTATCCGAACCGAATGGCAGTGGTACCCCGTTTCTCTTGCTGCTTCTTCACTCACCCCAAGAACTCCTGCCGATCTCCGCCGTCCGATCAAATTTCCTTCAAGCTCAATGTTTCCGAACCCGGGAAGTTACCTTCTCTTCCATTTAAAGTCGAAAAGCTTGTTTCGTCATTTGGAAATGTTGTACATGGAGTGTATGAGATCCACCATATGTTGCCAAAATCAAAATGTCAGAGAGACGTAAAGTTGAGATTCCCGGCAGTGGGACTTCTTCTCGGCAATTCCTTAATGTTGACAACACCACTGCAAGCTTTGGCGGAAACATGTGAAGCTGACAACTCCGGTTTCAGCATGCCCATACTGCTATTTGTAGCCCTTGTAGGGGCCACTGTTGGTGGCTTGGTTGCTCGGCAAAGGAAAGGAGAATTACAGCGAGTGAATGAACAGTTGCGTCAAATTAATCAATCTCTAAGAAGGCAAGCTAAGATTGAATCGTATGCTCCTAGTTTGAGTTATTCACCGATTGGTGCAAAAATACTACCAGAGACTGAGGTGATAGTTAACCCAAGGAAGCACGAGATGATATCTCGACTGAAGGCTGGGAAGAATTTTTTAAGAAATCAAGAAACGGAGAAAGCACTTGATGAATTTAAGACAGCTCTTGAGCTTGCCCAAAGTATGAAGGACCCAATTGAGGAAAAGAAAGCTGCAAGAGGTTTAGGAGCCTCACTGCAAAGATTGGGTAAGTACCGAGACGCCATTAAATACCATTCTATGGTTTTGGACATCTCCGAGCGAGAAGGAGAAGACTCAGGAAACACAGAAGCTTATGGAGCAATTGCTGATTGTTATACCGAGCTTGGAGATCTCGAGCGTGCAGGGAAGTTCTACGACAATTACATTGCGAGGTTGGAGTCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_12

Protein Analysis

321

Amino Acids

35.64

Weight (kDa)

8.84

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	250 - 314	3.5e-09	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14110 AT3G14110 AT3G14110
fragaria_vesca	FvH4_6g35160 FvH4_6g35160 FvH4_6g35160
malus_domestica	MD09G1178400.v1.1 MD17G1148400.v1.1
prunus_persica	Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1 Prupe.3G037600_v2.0.a1
pyrus_communis	pycom09g09670 pycom17g14170
rosa_chinensis	RchiOBHm_Chr2g0146421 RchiOBHm_Chr5g0074611
rosa_laevigata	RLG00000020199
rosa_multiflora	Rmu_co8338597.1_g000001 Rmu_sc0001986.1_g000002 Rmu_sc0002054.1_g000003 Rmu_sc0030037.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100110
rosa_rugosa	Rorug02G0394200 Rorug02G0394200
rosa_samantha	Rh2AG451000 Rh2BG463400 Rh2CG437800 Rh2DG472400
rosa_wichuraiana	Rw2G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	814
AciI	CCGC	2 cut(s)	119, 356
AclI	AACGTT	1 cut(s)	39
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	3 cut(s)	132, 646, 686
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	795
AfaI	GTAC	3 cut(s)	66, 225, 788
AfiI	CCNNNNNNNGG	7 cut(s)	162, 301, 302, 420, 421, 733, 814
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	142, 530
AjnI	CCWGG	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	270, 578, 786
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	2 cut(s)	161, 908
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	81, 746
ApoI	RAATTY	3 cut(s)	132, 646, 686
AseI	ATTAAT	1 cut(s)	498
Asp718I	GGTACC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	423, 724
AsuC2I	CCSGG	3 cut(s)	162, 163, 296
AsuHPI	GGTGA	3 cut(s)	86, 549, 604
AsuII	TTCGAA	1 cut(s)	11
AvaI	CYCGRG	2 cut(s)	161, 908
AvaII	GGWCC	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	852
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	68, 733
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	23
BcnI	CCSGG	3 cut(s)	162, 163, 296
BcoDI	GTCTC	3 cut(s)	270, 578, 786
BfaI	CTAG	1 cut(s)	543
BglII	AGATCT	1 cut(s)	904
BisI	GCNGC	2 cut(s)	82, 747
BlsI	GCNGC	2 cut(s)	83, 748
Bme1390I	CCNGG	4 cut(s)	23, 162, 163, 296
Bme18I	GGWCC	1 cut(s)	724
BmeT110I	CYCGRG	2 cut(s)	161, 908
BmgT120I	GGNCC	2 cut(s)	423, 724
BmiI	GGNNCC	4 cut(s)	66, 424, 726, 763
BmrFI	CCNGG	4 cut(s)	23, 162, 163, 296
BpiI	GAAGAC	1 cut(s)	852
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	3 cut(s)	162, 163, 296
BsaHI	GRCGYC	1 cut(s)	795
BsaJI	CCNNGG	3 cut(s)	21, 161, 605
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	7 cut(s)	162, 301, 302, 420, 421, 733, 814
Bse3DI	GCAATG	1 cut(s)	939
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	21, 161, 605
BseLI	CCNNNNNNNGG	7 cut(s)	162, 301, 302, 420, 421, 733, 814
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	2 cut(s)	579, 864
BseXI	GCAGC	2 cut(s)	68, 733
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	1 cut(s)	425
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	161, 908
BsiSI	CCGG	3 cut(s)	162, 296, 381
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	7 cut(s)	162, 301, 302, 420, 421, 733, 814
BsmAI	GTCTC	3 cut(s)	270, 578, 786
BsmBI	CGTCTC	2 cut(s)	270, 786
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	425
BsoBI	CYCGRG	2 cut(s)	161, 908
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	4 cut(s)	113, 127, 240, 904
BspACI	CCGC	2 cut(s)	119, 356
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	2 cut(s)	580, 863
BspLI	GGNNCC	4 cut(s)	66, 424, 726, 763
BspPI	GGATC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	939
BsrGI	TGTACA	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	21, 161, 605
BssMI	GATC	4 cut(s)	113, 127, 240, 904
BssNI	GRCGYC	1 cut(s)	795
BssSI	CACGAG	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	605
Bst2BI	CACGAG	1 cut(s)	614
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	430, 486
Bst6I	CTCTTC	2 cut(s)	13, 183
BstACI	GRCGYC	1 cut(s)	795
BstAUI	TGTACA	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	5 cut(s)	348, 392, 519, 708, 915
BstDEI	CTNAG	4 cut(s)	509, 522, 588, 850
BstKTI	GATC	4 cut(s)	116, 130, 243, 907
BstMAI	GTCTC	3 cut(s)	270, 578, 786
BstMBI	GATC	4 cut(s)	113, 127, 240, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 872
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	2 cut(s)	366, 394
BstSCI	CCNGG	4 cut(s)	21, 160, 161, 294
BstV1I	GCAGC	2 cut(s)	68, 733
BstV2I	GAAGAC	1 cut(s)	852
BstX2I	RGATCY	2 cut(s)	240, 904
BstYI	RGATCY	2 cut(s)	240, 904
BsuRI	GGCC	1 cut(s)	425
BtsI	GCAGTG	4 cut(s)	66, 306, 341, 767
BtsIMutI	CAGTG	5 cut(s)	66, 306, 341, 426, 767
Cac8I	GCNNGC	5 cut(s)	348, 392, 519, 708, 915
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr13I	GGNCC	2 cut(s)	423, 724
Cfr9I	CCCGGG	1 cut(s)	161
CseI	GACGC	2 cut(s)	479, 803
Csp6I	GTAC	3 cut(s)	65, 224, 787
CviAII	CATG	3 cut(s)	227, 363, 391
CviQI	GTAC	3 cut(s)	65, 224, 787
DdeI	CTNAG	4 cut(s)	509, 522, 588, 850
DpnI	GATC	4 cut(s)	115, 129, 242, 906
DpnII	GATC	4 cut(s)	113, 127, 240, 904
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	13, 183
EarI	CTCTTC	2 cut(s)	13, 183
EciI	GGCGGA	2 cut(s)	108, 371
Eco130I	CCWWGG	1 cut(s)	605
Eco32I	GATATC	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	2 cut(s)	161, 908
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRII	CCWGG	1 cut(s)	21
EcoRV	GATATC	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	605
Esp3I	CGTCTC	2 cut(s)	270, 786
FaeI	CATG	3 cut(s)	230, 366, 394
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	226, 362, 390
FauNDI	CATATG	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	82, 747
Fsp4HI	GCNGC	2 cut(s)	82, 747
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	2 cut(s)	82, 747
GsaI	CCCAGC	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	3 cut(s)	162, 296, 381
HgaI	GACGC	2 cut(s)	479, 803
Hin1I	GRCGYC	1 cut(s)	795
Hin1II	CATG	3 cut(s)	230, 366, 394
HincII	GTYRAC	2 cut(s)	333, 601
HindII	GTYRAC	2 cut(s)	333, 601
HindIII	AAGCTT	3 cut(s)	197, 348, 864
HinfI	GANTC	4 cut(s)	291, 530, 848, 953
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	3 cut(s)	162, 296, 381
HphI	GGTGA	3 cut(s)	86, 549, 604
Hpy166II	GTNNAC	2 cut(s)	333, 601
Hpy188I	TCNGA	6 cut(s)	48, 127, 157, 273, 832, 958
Hpy188III	TCNNGA	5 cut(s)	627, 662, 701, 852, 908
Hpy8I	GTNNAC	2 cut(s)	333, 601
HpyAV	CCTTC	6 cut(s)	148, 183, 507, 628, 715, 833
HpyCH4III	ACNGT	2 cut(s)	430, 486
HpyCH4IV	ACGT	2 cut(s)	39, 279
HpyCH4V	TGCA	5 cut(s)	346, 569, 749, 772, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 872
HpyF3I	CTNAG	4 cut(s)	509, 522, 588, 850
HpySE526I	ACGT	2 cut(s)	39, 279
Hsp92I	GRCGYC	1 cut(s)	795
Hsp92II	CATG	3 cut(s)	230, 366, 394
KpnI	GGTACC	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	4 cut(s)	113, 127, 240, 904
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	3 cut(s)	544, 761, 872
Lsp1109I	GCAGC	2 cut(s)	68, 733
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	39, 279
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	4 cut(s)	115, 129, 242, 906
MboI	GATC	4 cut(s)	113, 127, 240, 904
MboII	GAAGA	5 cut(s)	79, 170, 302, 655, 857
MfeI	CAATTG	2 cut(s)	729, 876
MflI	RGATCY	2 cut(s)	240, 904
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	9 cut(s)	132, 319, 464, 495, 646, 686, 729, 876, 934
MlyI	GAGTC	2 cut(s)	842, 962
MmeI	TCCRAC	1 cut(s)	930
MnlI	CCTC	5 cut(s)	583, 727, 746, 775, 939
MseI	TTAA	7 cut(s)	186, 326, 498, 600, 653, 690, 801
MspI	CCGG	3 cut(s)	162, 296, 381
MspR9I	CCNGG	4 cut(s)	23, 162, 163, 296
MunI	CAATTG	2 cut(s)	729, 876
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	400, 872
NciI	CCSGG	3 cut(s)	162, 163, 296
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	4 cut(s)	113, 127, 240, 904
NlaIII	CATG	3 cut(s)	230, 366, 394
NlaIV	GGNNCC	4 cut(s)	66, 424, 726, 763
NmeAIII	GCCGAG	2 cut(s)	294, 427
NspI	RCATGY	2 cut(s)	366, 394
NspV	TTCGAA	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	908
PciI	ACATGT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	291, 530
PflMI	CCANNNNNTGG	1 cut(s)	814
PkrI	GCNGC	2 cut(s)	83, 748
PleI	GAGTC	2 cut(s)	842, 961
PpsI	GAGTC	2 cut(s)	842, 961
PpuMI	RGGWCCY	1 cut(s)	724
PscI	ACATGT	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	498
Psp1406I	AACGTT	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	724
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	4 cut(s)	66, 424, 726, 763
PspPI	GGNCC	2 cut(s)	423, 724
PspPPI	RGGWCCY	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	240, 904
RsaI	GTAC	3 cut(s)	66, 225, 788
RsaNI	GTAC	3 cut(s)	65, 224, 787
SapI	GCTCTTC	1 cut(s)	13
SaqAI	TTAA	7 cut(s)	186, 326, 498, 600, 653, 690, 801
SatI	GCNGC	2 cut(s)	82, 747
Sau3AI	GATC	4 cut(s)	113, 127, 240, 904
Sau96I	GGNCC	2 cut(s)	423, 724
SchI	GAGTC	2 cut(s)	842, 962
ScrFI	CCNGG	4 cut(s)	23, 162, 163, 296
SduI	GDGCHC	1 cut(s)	8
Sfr274I	CTCGAG	1 cut(s)	908
SfuI	TTCGAA	1 cut(s)	11
SinI	GGWCC	1 cut(s)	724
SlaI	CTCGAG	1 cut(s)	908
SmaI	CCCGGG	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	701, 908
SmoI	CTYRAG	2 cut(s)	701, 908
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	9 cut(s)	132, 319, 464, 495, 646, 686, 729, 876, 934
SsiI	CCGC	2 cut(s)	119, 356
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	4 cut(s)	21, 160, 161, 294
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	430, 486
TaiI	ACGT	2 cut(s)	42, 282
TaqI	TCGA	4 cut(s)	11, 192, 628, 909
TasI	AATT	9 cut(s)	132, 319, 464, 495, 646, 686, 729, 876, 934
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	291, 530
Tru1I	TTAA	7 cut(s)	186, 326, 498, 600, 653, 690, 801
Tru9I	TTAA	7 cut(s)	186, 326, 498, 600, 653, 690, 801
TscAI	CASTG	5 cut(s)	66, 306, 348, 433, 774
TseI	GCWGC	2 cut(s)	81, 746
TspDTI	ATGAA	3 cut(s)	495, 699, 734
TspGWI	ACGGA	1 cut(s)	683
TspMI	CCCGGG	1 cut(s)	161
TspRI	CASTG	5 cut(s)	66, 306, 348, 433, 774
Van91I	CCANNNNNTGG	1 cut(s)	814
VpaK11BI	GGWCC	1 cut(s)	724
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	3 cut(s)	132, 646, 686
XceI	RCATGY	2 cut(s)	366, 394
XhoI	CTCGAG	1 cut(s)	908
XmaI	CCCGGG	1 cut(s)	161
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.