pycom09g10810

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0003095
Physical Location & Seq
Reverse (-)
8893226 .. 8894178
953 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 747 bp
ATGGAGTCACACATAGATCCTGGACCAGTTGATAAGTCTGTACTTTATGATCAAGAAAATCATATCTCTTCAGCGATTTGGGATGGACAGGAGCGTGGCGTGCTTAGATGTCACGAACACACTTCGATGCTTGAGCAATGGAGACTCATACCTCAACAAGTTGAGTTGGTTGAGAAGGCCGGTTTTAAACACTTCAGATCAATACCGACAATTGTTCTTGACAATTCACTAATATCGGCACTTGTTGAGAGGTGGAGGAGAGAAACAAATACATTTCATTTGCCTGTTGGAGAAATGACTATAACGCTTGAGGATGTTGCGCTTATACTTGGGCTACCAATCGATGGAAAACCTGTTATTGGTGTACCGGTGAAGACACCCAACTCGGTATGTGAAGACTTGCTTGGGAAATCACCAAAGGACCTGAATGGGGGAATGATGAAGCTAAATTGGTTGAGAGAGTGTTTTTCTAGATGTCCTGAAGATGCACCGATTGAAGAGATTGAGCGCCACACTCGTGCTTACCTCCTATATATTGTTGGCTGTACAATATTTTCCACAACCACTGGAAATAAAGTCTCTGTTACATTTCTTCCGCTGTTTGAAAAGTTTGAAGAAGCTGGAAAATATGCATGGGGTGCAGCAGCATTGGCATTCCTCTATAGAGCTCTTGGTAATGCCTCCCTTAAATCTCAAGGCACGATCAGTGGCTCTTTGACGCTACTTGCTGGAGTTACTATCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

249

Amino Acids

27.55

Weight (kDa)

5.67

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 61 - 242 4.9e-61 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 344
AciI CCGC 1 cut(s) 596
AclWI GGATC 1 cut(s) 11
AcuI CTGAAG 3 cut(s) 54, 178, 501
AfaI GTAC 3 cut(s) 42, 366, 547
AfiI CCNNNNNNNGG 3 cut(s) 344, 359, 430
AgeI ACCGGT 1 cut(s) 367
AgsI TTSAA 3 cut(s) 497, 605, 614
AjnI CCWGG 1 cut(s) 19
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AleI CACNNNNGTG 1 cut(s) 516
AluBI AGCT 3 cut(s) 445, 620, 668
AluI AGCT 3 cut(s) 445, 620, 668
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 136, 583
AlwI GGATC 1 cut(s) 11
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 641, 644
AsiGI ACCGGT 1 cut(s) 367
AspLEI GCGC 2 cut(s) 322, 510
AspS9I GGNCC 2 cut(s) 23, 421
AsuHPI GGTGA 3 cut(s) 382, 405, 733
AvaII GGWCC 2 cut(s) 23, 421
BanII GRGCYC 1 cut(s) 670
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 2 cut(s) 380, 402
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 2 cut(s) 653, 656
BccI CCATC 2 cut(s) 77, 338
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 136, 583
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 661
BfoI RGCGCY 1 cut(s) 511
BisI GCNGC 2 cut(s) 642, 645
BlsI GCNGC 2 cut(s) 643, 646
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 2 cut(s) 23, 421
BmgT120I GGNCC 2 cut(s) 23, 421
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 117, 475
BpiI GAAGAC 2 cut(s) 380, 402
BpuEI CTTGAG 3 cut(s) 152, 329, 678
Bsa29I ATCGAT 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 359, 430
Bse118I RCCGGY 2 cut(s) 179, 367
Bse1I ACTGG 2 cut(s) 26, 571
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 342
BseGI GGATG 2 cut(s) 88, 319
BseLI CCNNNNNNNGG 3 cut(s) 344, 359, 430
BseMI GCAATG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 26, 571
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 653, 656
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 1 cut(s) 179
BshTI ACCGGT 1 cut(s) 367
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 2 cut(s) 180, 368
BslI CCNNNNNNNGG 3 cut(s) 344, 359, 430
BsmAI GTCTC 2 cut(s) 136, 583
BsmI GAATGC 1 cut(s) 653
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 4 cut(s) 16, 49, 197, 702
BspACI CCGC 1 cut(s) 596
BspANI GGCC 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 342
BspPI GGATC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 143
BsrFI RCCGGY 2 cut(s) 179, 367
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 2 cut(s) 26, 571
BssAI RCCGGY 2 cut(s) 179, 367
BssMI GATC 4 cut(s) 16, 49, 197, 702
BssSI CACGAG 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 21
Bst6I CTCTTC 2 cut(s) 73, 492
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 88, 319
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 2 cut(s) 322, 510
BstKTI GATC 4 cut(s) 19, 52, 200, 705
BstMAI GTCTC 2 cut(s) 136, 583
BstMBI GATC 4 cut(s) 16, 49, 197, 702
BstMWI GCNNNNNNNGC 3 cut(s) 100, 638, 650
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 661
BstV1I GCAGC 2 cut(s) 653, 656
BstV2I GAAGAC 2 cut(s) 380, 402
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 1 cut(s) 179
BsuTUI ATCGAT 1 cut(s) 342
BtsCI GGATG 2 cut(s) 88, 319
BtsIMutI CAGTG 2 cut(s) 564, 712
Cac8I GCNNGC 1 cut(s) 101
CfoI GCGC 2 cut(s) 322, 510
Cfr10I RCCGGY 2 cut(s) 179, 367
Cfr13I GGNCC 2 cut(s) 23, 421
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 727
Csp6I GTAC 3 cut(s) 41, 365, 546
CspAI ACCGGT 1 cut(s) 367
CviAII CATG 1 cut(s) 633
CviJI RGCY 7 cut(s) 179, 334, 445, 543, 620, 668, 711
CviKI_1 RGCY 7 cut(s) 179, 334, 445, 543, 620, 668, 711
CviQI GTAC 3 cut(s) 41, 365, 546
DdeI CTNAG 1 cut(s) 104
DpnI GATC 4 cut(s) 18, 51, 199, 704
DpnII GATC 4 cut(s) 16, 49, 197, 702
DraI TTTAAA 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 73, 492
EarI CTCTTC 2 cut(s) 73, 492
Ecl136II GAGCTC 1 cut(s) 668
Eco24I GRGCYC 1 cut(s) 670
Eco47I GGWCC 2 cut(s) 23, 421
Eco53kI GAGCTC 1 cut(s) 668
Eco57I CTGAAG 3 cut(s) 54, 178, 501
EcoICRI GAGCTC 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 670
FaeI CATG 1 cut(s) 636
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FatI CATG 1 cut(s) 632
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 642, 645
FokI GGATG 2 cut(s) 95, 326
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 642, 645
FspBI CTAG 1 cut(s) 471
GlaI GCGC 2 cut(s) 321, 509
GluI GCNGC 2 cut(s) 642, 645
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 180, 368
HgaI GACGC 1 cut(s) 727
HhaI GCGC 2 cut(s) 322, 510
Hin1II CATG 1 cut(s) 636
Hin6I GCGC 2 cut(s) 320, 508
HinP1I GCGC 2 cut(s) 320, 508
HinfI GANTC 2 cut(s) 5, 144
HpaII CCGG 2 cut(s) 180, 368
HphI GGTGA 3 cut(s) 382, 405, 733
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 5 cut(s) 53, 113, 218, 471, 479
Hpy8I GTNNAC 1 cut(s) 365
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 488, 632, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 638, 650
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 636
HspAI GCGC 2 cut(s) 320, 508
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 4 cut(s) 16, 49, 197, 702
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 2 cut(s) 653, 656
LweI GCATC 2 cut(s) 117, 475
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 4 cut(s) 6, 110, 583, 733
MalI GATC 4 cut(s) 18, 51, 199, 704
MboI GATC 4 cut(s) 16, 49, 197, 702
MboII GAAGA 7 cut(s) 60, 385, 407, 494, 509, 584, 626
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 3 cut(s) 210, 223, 448
MlyI GAGTC 2 cut(s) 14, 138
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 7 cut(s) 162, 243, 249, 304, 536, 668, 691
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 2 cut(s) 186, 687
MslI CAYNNNNRTG 2 cut(s) 125, 516
MspA1I CMGCKG 1 cut(s) 598
MspI CCGG 2 cut(s) 180, 368
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 653
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 100, 638, 650
NdeII GATC 4 cut(s) 16, 49, 197, 702
NlaIII CATG 1 cut(s) 636
NmuCI GTSAC 2 cut(s) 6, 110
NsiI ATGCAT 1 cut(s) 634
OliI CACNNNNGTG 1 cut(s) 516
PctI GAATGC 1 cut(s) 653
PflMI CCANNNNNTGG 1 cut(s) 344
PfoI TCCNGGA 1 cut(s) 19
PinAI ACCGGT 1 cut(s) 367
PkrI GCNGC 2 cut(s) 643, 646
PleI GAGTC 2 cut(s) 13, 138
PpsI GAGTC 2 cut(s) 13, 138
PpuMI RGGWCCY 1 cut(s) 421
Psp124BI GAGCTC 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 2 cut(s) 23, 421
PspPPI RGGWCCY 1 cut(s) 421
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 3 cut(s) 42, 366, 547
RsaNI GTAC 3 cut(s) 41, 365, 546
RseI CAYNNNNRTG 2 cut(s) 125, 516
SacI GAGCTC 1 cut(s) 670
SaqAI TTAA 2 cut(s) 186, 687
SatI GCNGC 2 cut(s) 642, 645
Sau3AI GATC 4 cut(s) 16, 49, 197, 702
Sau96I GGNCC 2 cut(s) 23, 421
SchI GAGTC 2 cut(s) 14, 138
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 670
SetI ASST 9 cut(s) 154, 254, 355, 426, 447, 528, 622, 670, 746
SfaNI GCATC 2 cut(s) 117, 475
SfcI CTRYAG 1 cut(s) 661
SinI GGWCC 2 cut(s) 23, 421
SmiMI CAYNNNNRTG 2 cut(s) 125, 516
SmlI CTYRAG 3 cut(s) 131, 308, 693
SmoI CTYRAG 3 cut(s) 131, 308, 693
Sse9I AATT 3 cut(s) 210, 223, 448
SsiI CCGC 1 cut(s) 596
SspI AATATT 1 cut(s) 552
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 670
StyD4I CCNGG 1 cut(s) 19
TaqI TCGA 2 cut(s) 125, 342
TasI AATT 3 cut(s) 210, 223, 448
TatI WGTACW 2 cut(s) 40, 545
Tru1I TTAA 2 cut(s) 186, 687
Tru9I TTAA 2 cut(s) 186, 687
TscAI CASTG 2 cut(s) 571, 712
TseFI GTSAC 2 cut(s) 6, 110
TseI GCWGC 2 cut(s) 641, 644
Tsp45I GTSAC 2 cut(s) 6, 110
TspDTI ATGAA 2 cut(s) 266, 455
TspRI CASTG 2 cut(s) 571, 712
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 23, 421
XbaI TCTAGA 1 cut(s) 470
XspI CTAG 1 cut(s) 471
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.