pycom09g15650

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010298
Physical Location & Seq
Forward (+)
15727103 .. 15729743
2641 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGGCGATTCTCAACTCTTATCTCTCAGTGACGTCCACAGCCACACCCATCTCCCCAGACTCAGCAACTCCACCCTTACCCGACCCGAGACAGACCAAGATCCTATTGCCCAAGAAGAAGCCCATGAAATGGTCCACCGGGGTCGCTCCCGGCGATTACGGCGGACCTCCGACCACCACCAAGCTCCGCAAGTACTGGGGCGGCGAGGATGACCCTCTCACCTCTGACGATTTCATTTGGAACAGAGAATTCATGGACCGCATGAAAAAACTCATTCAGGAACCCAATTCTTCCATTCAATCCACTCCTGTCAAGGAGAAGCCTTCCGGGTTTCTCAGCATAAATAGAGTCATGAGCCTTGACAGTTTAGATGTTGATTTGAGCAAACAACTCACTGCTGCTCCTGCCCAGCCCAAGTTAGAACCACAAGTTGAGGCTCCGGCTAAAAGTGCCAGCAGTACTACTACCAAATGGAAATTGGCACCAACACGGCGTGAACAAGATAAGTGGGATAGAGCAACTAAGGCTGCAACTGGGGGCAGTGAAGTGATGTTTCGGGAATTAAGGCGTTCTCAGGAGGACCCAAAAGTAGTAGCTGAGCAGTATAGGAAGCAGTATTTTAGGTTAAAGAAGAGGCTGCAATTCCTTACACTGGGTATAGGCAGTGTTGGATTAGTCTCAGCTTATGTTTCATATTCCCCTGAAATTACAGCTAGGATAACTGGATAA

Protein Analysis

243

Amino Acids

26.95

Weight (kDa)

9.72

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 194 - 238 6.4e-14 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 129
AciI CCGC 4 cut(s) 162, 187, 201, 259
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 32
AdeI CACNNNGTG 1 cut(s) 494
AfaI GTAC 2 cut(s) 194, 460
AfiI CCNNNNNNNGG 2 cut(s) 129, 652
AgsI TTSAA 1 cut(s) 299
AluBI AGCT 4 cut(s) 184, 596, 683, 713
AluI AGCT 4 cut(s) 184, 596, 683, 713
Alw26I GTCTC 2 cut(s) 82, 682
AlwI GGATC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 85
ApeKI GCWGC 3 cut(s) 398, 527, 637
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 4 cut(s) 132, 164, 256, 580
AsuC2I CCSGG 3 cut(s) 139, 150, 328
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 4 cut(s) 132, 164, 256, 580
BanI GGYRCC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 385, 514, 624
BccI CCATC 1 cut(s) 56
BceAI ACGGC 2 cut(s) 175, 506
BcnI CCSGG 3 cut(s) 139, 150, 328
BcoDI GTCTC 2 cut(s) 82, 682
BfaI CTAG 1 cut(s) 714
BisI GCNGC 4 cut(s) 202, 399, 528, 638
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 4 cut(s) 203, 400, 529, 639
BmcAI AGTACT 2 cut(s) 194, 460
Bme1390I CCNGG 3 cut(s) 139, 150, 328
Bme18I GGWCC 4 cut(s) 132, 164, 256, 580
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 4 cut(s) 132, 164, 256, 580
BmiI GGNNCC 4 cut(s) 282, 438, 483, 582
BmrFI CCNGG 3 cut(s) 139, 150, 328
BmrI ACTGGG 3 cut(s) 205, 543, 662
BmuI ACTGGG 3 cut(s) 205, 543, 662
Bpu1102I GCTNAGC 1 cut(s) 597
BpuMI CCSGG 3 cut(s) 139, 150, 328
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 652
Bse1I ACTGG 4 cut(s) 200, 538, 657, 727
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 129, 652
BseMII CTCAG 6 cut(s) 39, 75, 349, 587, 588, 693
BseNI ACTGG 4 cut(s) 200, 538, 657, 727
BseXI GCAGC 3 cut(s) 385, 514, 624
BseYI CCCAGC 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 4 cut(s) 138, 150, 327, 440
BslI CCNNNNNNNGG 2 cut(s) 129, 652
BsmAI GTCTC 2 cut(s) 82, 682
BsoBI CYCGRG 1 cut(s) 85
Bsp143I GATC 1 cut(s) 99
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 4 cut(s) 162, 187, 201, 259
BspCNI CTCAG 6 cut(s) 38, 74, 348, 586, 589, 692
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 4 cut(s) 282, 438, 483, 582
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 481
BsrI ACTGG 4 cut(s) 200, 538, 657, 727
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 7 cut(s) 25, 61, 335, 522, 573, 597, 679
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 82, 682
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 159, 404, 449, 524
BstSCI CCNGG 3 cut(s) 137, 148, 326
BstV1I GCAGC 3 cut(s) 385, 514, 624
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 3 cut(s) 393, 547, 670
BtsIMutI CAGTG 5 cut(s) 33, 393, 547, 650, 670
Cac8I GCNNGC 1 cut(s) 454
CciI TCATGA 1 cut(s) 351
Cfr13I GGNCC 4 cut(s) 132, 164, 256, 580
Csp6I GTAC 2 cut(s) 193, 459
CspCI CAANNNNNGTGG 2 cut(s) 488, 523
CviAII CATG 4 cut(s) 124, 253, 262, 352
CviQI GTAC 2 cut(s) 193, 459
DdeI CTNAG 7 cut(s) 25, 61, 335, 522, 573, 597, 679
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
DraIII CACNNNGTG 1 cut(s) 494
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 1 cut(s) 177
Eco47I GGWCC 4 cut(s) 132, 164, 256, 580
Eco88I CYCGRG 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 248
FaeI CATG 4 cut(s) 127, 256, 265, 355
FaiI YATR 9 cut(s) 125, 254, 263, 341, 353, 606, 659, 687, 694
FatI CATG 4 cut(s) 123, 252, 261, 351
Fnu4HI GCNGC 4 cut(s) 202, 399, 528, 638
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 4 cut(s) 202, 399, 528, 638
FspBI CTAG 1 cut(s) 714
GluI GCNGC 4 cut(s) 202, 399, 528, 638
GsaI CCCAGC 1 cut(s) 412
HapII CCGG 4 cut(s) 138, 150, 327, 440
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 4 cut(s) 127, 256, 265, 355
HinfI GANTC 3 cut(s) 7, 59, 348
HpaII CCGG 4 cut(s) 138, 150, 327, 440
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 3 cut(s) 36, 135, 497
Hpy188I TCNGA 2 cut(s) 171, 226
Hpy188III TCNNGA 4 cut(s) 278, 352, 557, 575
Hpy8I GTNNAC 3 cut(s) 36, 135, 497
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 530, 640
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 404, 449, 524
HpyF3I CTNAG 7 cut(s) 25, 61, 335, 522, 573, 597, 679
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 4 cut(s) 127, 256, 265, 355
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 4 cut(s) 151, 189, 406, 442
Lsp1109I GCAGC 3 cut(s) 385, 514, 624
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 3 cut(s) 127, 282, 643
MflI RGATCY 1 cut(s) 99
MluCI AATT 6 cut(s) 248, 286, 476, 560, 641, 705
MlyI GAGTC 2 cut(s) 53, 357
MmeI TCCRAC 2 cut(s) 194, 649
MnlI CCTC 7 cut(s) 177, 199, 225, 232, 427, 571, 627
MseI TTAA 2 cut(s) 563, 626
MspI CCGG 4 cut(s) 138, 150, 327, 440
MspR9I CCNGG 3 cut(s) 139, 150, 328
MwoI GCNNNNNNNGC 4 cut(s) 159, 404, 449, 524
NciI CCSGG 3 cut(s) 139, 150, 328
NdeII GATC 1 cut(s) 99
NlaIII CATG 4 cut(s) 127, 256, 265, 355
NlaIV GGNNCC 4 cut(s) 282, 438, 483, 582
NmuCI GTSAC 1 cut(s) 28
PagI TCATGA 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 4 cut(s) 203, 400, 529, 639
PleI GAGTC 2 cut(s) 53, 356
PpsI GAGTC 2 cut(s) 53, 356
PpuMI RGGWCCY 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 580
PspFI CCCAGC 1 cut(s) 408
PspN4I GGNNCC 4 cut(s) 282, 438, 483, 582
PspPI GGNCC 4 cut(s) 132, 164, 256, 580
PspPPI RGGWCCY 1 cut(s) 580
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 2 cut(s) 194, 460
RsaNI GTAC 2 cut(s) 193, 459
SaqAI TTAA 2 cut(s) 563, 626
SatI GCNGC 4 cut(s) 202, 399, 528, 638
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 4 cut(s) 132, 164, 256, 580
ScaI AGTACT 2 cut(s) 194, 460
SchI GAGTC 2 cut(s) 53, 357
ScrFI CCNGG 3 cut(s) 139, 150, 328
SetI ASST 8 cut(s) 35, 169, 186, 224, 598, 626, 685, 715
SinI GGWCC 4 cut(s) 132, 164, 256, 580
Sse9I AATT 6 cut(s) 248, 286, 476, 560, 641, 705
SsiI CCGC 4 cut(s) 162, 187, 201, 259
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 3 cut(s) 137, 148, 326
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 35
TasI AATT 6 cut(s) 248, 286, 476, 560, 641, 705
TatI WGTACW 2 cut(s) 192, 458
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 563, 626
Tru9I TTAA 2 cut(s) 563, 626
TscAI CASTG 5 cut(s) 33, 400, 547, 657, 670
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 3 cut(s) 398, 527, 637
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 5 cut(s) 140, 223, 241, 278, 681
TspRI CASTG 5 cut(s) 33, 400, 547, 657, 670
Van91I CCANNNNNTGG 1 cut(s) 129
VpaK11BI GGWCC 4 cut(s) 132, 164, 256, 580
XapI RAATTY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XspI CTAG 1 cut(s) 714
ZraI GACGTC 1 cut(s) 33
ZrmI AGTACT 2 cut(s) 194, 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.