Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Forward (+)

15948462 .. 15951764

Gene Structure 3303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTTTGTGGGAGACTCATTGAGTTTCAATCAGTGGGTGTCTTTAACATGTATGCTTCATGCATGGGTGCCAAATTCTAGGACTTCATATGTTAAGAAAGATGGTTTAGCTTCAGTCACATTCCAGGACTATGGAGTACAAATACTGCTGTATCGCACACCATACTTGGTAGATCTTGTCAACGAGAAGGTTGGACGAGTGTTGAAGCTTGACTCAATTACGGATGGCAAAGCATGGAGAGGCATGGACATGTTGATCTTCGACACGTGGCACTGGTGGACTCACACTGGAAGAGCACAGCCATGGGACTACCTTGAAGAAAGGGGAAAATTGTACAAAGATATGAACCGTCTGATCGCATTTTACAAAGGAATGACAACTTGGGCCAGATGGGTCGACCGAAATGTCTATCCTTCCAAAACCAAGGTCTTCTTCCAAGGCATTTCTCCTACCCATTACCTGGGAAAGGATTGGAATCAGCCAACAAGATCATGCGCAAGTGAAGCACAACCATACTATGGGAGGAAGTATCCAGCAGGAGTACCTTTGTCTTGGGTTGTAGTCAACAAAGTGTTGGCTAGGATTAAGAAACCAGTCTATCTTCTGGACATCACATTTCTCTCCCAAATCCGCAAAGATGCACACCCATCCAAGTACAGCGGCGAGCACGGCACGGACTGCAGCCACTGGTGCCTTCCCGGCCTGCCGGATACTTGGAACCAGCTCCTCTATGCTGCTCTATTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

250

Amino Acids

28.93

Weight (kDa)

9.3

Isoelectric Point (pI)

25.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 245	7.9e-84	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
Acc16I	TGCGCA	1 cut(s)	496
AccB1I	GGYRCC	2 cut(s)	67, 690
AccB7I	CCANNNNNTGG	2 cut(s)	460, 518
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	2 cut(s)	631, 660
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	96
AcvI	CACGTG	1 cut(s)	267
AfaI	GTAC	4 cut(s)	138, 335, 543, 656
AfiI	CCNNNNNNNGG	3 cut(s)	460, 466, 518
AflIII	ACRYGT	3 cut(s)	47, 249, 264
AgsI	TTSAA	3 cut(s)	28, 205, 317
AjnI	CCWGG	2 cut(s)	123, 459
AjuI	GAANNNNNNNTTGG	4 cut(s)	364, 396, 416, 448
AluBI	AGCT	3 cut(s)	110, 208, 724
AluI	AGCT	3 cut(s)	110, 208, 724
Alw21I	GWGCWC	2 cut(s)	298, 669
Alw26I	GTCTC	1 cut(s)	6
AlwNI	CAGNNNCTG	1 cut(s)	687
AoxI	GGCC	2 cut(s)	384, 700
ApeKI	GCWGC	2 cut(s)	681, 734
ApoI	RAATTY	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	411, 443
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	699
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BanI	GGYRCC	2 cut(s)	67, 690
BbrPI	CACGTG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	2 cut(s)	298, 669
BbvI	GCAGC	2 cut(s)	693, 721
BccI	CCATC	4 cut(s)	95, 218, 384, 655
BceAI	ACGGC	1 cut(s)	685
BciT130I	CCWGG	2 cut(s)	125, 461
BciVI	GTATCC	2 cut(s)	540, 703
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	2 cut(s)	78, 579
BfmI	CTRYAG	1 cut(s)	679
BfuI	GTATCC	2 cut(s)	540, 703
BglI	GCCNNNNNGGC	1 cut(s)	699
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	3 cut(s)	661, 682, 735
BlsI	GCNGC	3 cut(s)	662, 683, 736
Bme1390I	CCNGG	3 cut(s)	125, 461, 699
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	3 cut(s)	69, 692, 719
BmrFI	CCNGG	3 cut(s)	125, 461, 699
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	4 cut(s)	302, 423, 436, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	460, 466, 518
Bse1I	ACTGG	4 cut(s)	278, 292, 593, 692
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	125, 461
BseDI	CCNNGG	4 cut(s)	302, 423, 436, 460
BseGI	GGATG	2 cut(s)	229, 647
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	3 cut(s)	460, 466, 518
BseNI	ACTGG	4 cut(s)	278, 292, 593, 692
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	2 cut(s)	693, 721
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	386, 702
BshNI	GGYRCC	2 cut(s)	67, 690
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	298, 669
BsiSI	CCGG	2 cut(s)	699, 707
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	460, 466, 518
BsmAI	GTCTC	1 cut(s)	6
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	386, 702
Bsp1286I	GDGCHC	2 cut(s)	298, 669
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	172, 255, 354, 488
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	2 cut(s)	631, 660
BspANI	GGCC	2 cut(s)	386, 702
BspLI	GGNNCC	3 cut(s)	69, 692, 719
BspMAI	CTGCAG	1 cut(s)	683
BspQI	GCTCTTC	1 cut(s)	286
BspT107I	GGYRCC	2 cut(s)	67, 690
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	4 cut(s)	278, 292, 593, 692
BssECI	CCNNGG	4 cut(s)	302, 423, 436, 460
BssMI	GATC	4 cut(s)	172, 255, 354, 488
BssT1I	CCWWGG	3 cut(s)	302, 423, 436
Bst2UI	CCWGG	2 cut(s)	125, 461
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstAUI	TGTACA	1 cut(s)	333
BstBAI	YACGTR	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	665, 704
BstDSI	CCRYGG	1 cut(s)	302
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	229, 647
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	4 cut(s)	175, 258, 357, 491
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	4 cut(s)	172, 255, 354, 488
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	6 cut(s)	503, 669, 678, 690, 699, 743
BstNI	CCWGG	2 cut(s)	125, 461
BstNSI	RCATGY	2 cut(s)	51, 253
BstSCI	CCNGG	3 cut(s)	123, 459, 697
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	693, 721
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	172
BsuI	GTATCC	2 cut(s)	540, 703
BsuRI	GGCC	2 cut(s)	386, 702
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	229, 647
BtsIMutI	CAGTG	4 cut(s)	38, 271, 285, 685
Cac8I	GCNNGC	2 cut(s)	665, 704
CaiI	CAGNNNCTG	1 cut(s)	687
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	4 cut(s)	137, 334, 542, 655
CviAII	CATG	8 cut(s)	48, 59, 63, 234, 244, 250, 303, 492
CviJI	RGCY	9 cut(s)	110, 208, 301, 386, 481, 578, 684, 702, 724
CviKI_1	RGCY	9 cut(s)	110, 208, 301, 386, 481, 578, 684, 702, 724
CviQI	GTAC	4 cut(s)	137, 334, 542, 655
DpnI	GATC	4 cut(s)	174, 257, 356, 490
DpnII	GATC	4 cut(s)	172, 255, 354, 488
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco130I	CCWWGG	3 cut(s)	302, 423, 436
Eco57I	CTGAAG	1 cut(s)	96
Eco72I	CACGTG	1 cut(s)	267
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	123, 459
EcoT14I	CCWWGG	3 cut(s)	302, 423, 436
EcoT22I	ATGCAT	1 cut(s)	64
ErhI	CCWWGG	3 cut(s)	302, 423, 436
FaeI	CATG	8 cut(s)	51, 62, 66, 237, 247, 253, 306, 495
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	8 cut(s)	47, 58, 62, 233, 243, 249, 302, 491
FauNDI	CATATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	661, 682, 735
FokI	GGATG	2 cut(s)	236, 634
Fsp4HI	GCNGC	3 cut(s)	661, 682, 735
FspBI	CTAG	2 cut(s)	78, 579
FspI	TGCGCA	1 cut(s)	496
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	3 cut(s)	661, 682, 735
HaeIII	GGCC	2 cut(s)	386, 702
HapII	CCGG	2 cut(s)	699, 707
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	8 cut(s)	51, 62, 66, 237, 247, 253, 306, 495
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	3 cut(s)	181, 397, 565
HindII	GTYRAC	3 cut(s)	181, 397, 565
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	4 cut(s)	14, 212, 280, 475
HpaII	CCGG	2 cut(s)	699, 707
Hpy166II	GTNNAC	4 cut(s)	181, 279, 397, 565
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	4 cut(s)	181, 279, 397, 565
HpyAV	CCTTC	3 cut(s)	181, 423, 704
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	62, 641, 681
HpyF10VI	GCNNNNNNNGC	6 cut(s)	503, 669, 678, 690, 699, 743
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	8 cut(s)	51, 62, 66, 237, 247, 253, 306, 495
HspAI	GCGC	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	172, 255, 354, 488
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	729
Lsp1109I	GCAGC	2 cut(s)	693, 721
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	78, 579
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	4 cut(s)	174, 257, 356, 490
MboI	GATC	4 cut(s)	172, 255, 354, 488
MboII	GAAGA	6 cut(s)	250, 303, 329, 421, 424, 593
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	298, 669
MluCI	AATT	3 cut(s)	73, 216, 329
MlyI	GAGTC	3 cut(s)	8, 206, 274
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	233, 516, 737
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	3 cut(s)	44, 93, 585
MslI	CAYNNNNRTG	2 cut(s)	248, 301
MspA1I	CMGCKG	1 cut(s)	660
MspI	CCGG	2 cut(s)	699, 707
MspR9I	CCNGG	3 cut(s)	125, 461, 699
MvaI	CCWGG	2 cut(s)	125, 461
MwoI	GCNNNNNNNGC	6 cut(s)	503, 669, 678, 690, 699, 743
NciI	CCSGG	1 cut(s)	699
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	4 cut(s)	172, 255, 354, 488
NlaIII	CATG	8 cut(s)	51, 62, 66, 237, 247, 253, 306, 495
NlaIV	GGNNCC	3 cut(s)	69, 692, 719
NmuCI	GTSAC	1 cut(s)	115
NsbI	TGCGCA	1 cut(s)	496
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	2 cut(s)	51, 253
PciI	ACATGT	2 cut(s)	47, 249
PciSI	GCTCTTC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	475
PflMI	CCANNNNNTGG	2 cut(s)	460, 518
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	662, 683, 736
PleI	GAGTC	3 cut(s)	8, 206, 274
PmaCI	CACGTG	1 cut(s)	267
PmlI	CACGTG	1 cut(s)	267
PpsI	GAGTC	3 cut(s)	8, 206, 274
Ppu21I	YACGTR	1 cut(s)	267
PscI	ACATGT	2 cut(s)	47, 249
Psp6I	CCWGG	2 cut(s)	123, 459
PspCI	CACGTG	1 cut(s)	267
PspGI	CCWGG	2 cut(s)	123, 459
PspN4I	GGNNCC	3 cut(s)	69, 692, 719
PspPI	GGNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	683
PstNI	CAGNNNCTG	1 cut(s)	687
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	4 cut(s)	138, 335, 543, 656
RsaNI	GTAC	4 cut(s)	137, 334, 542, 655
RseI	CAYNNNNRTG	2 cut(s)	248, 301
SalI	GTCGAC	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	44, 93, 585
SatI	GCNGC	3 cut(s)	661, 682, 735
Sau3AI	GATC	4 cut(s)	172, 255, 354, 488
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	3 cut(s)	8, 206, 274
ScrFI	CCNGG	3 cut(s)	125, 461, 699
SduI	GDGCHC	2 cut(s)	298, 669
SetI	ASST	9 cut(s)	112, 192, 210, 269, 315, 429, 462, 547, 726
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	679
SmiMI	CAYNNNNRTG	2 cut(s)	248, 301
Sse9I	AATT	3 cut(s)	73, 216, 329
SsiI	CCGC	2 cut(s)	631, 660
SspMI	CTAG	2 cut(s)	78, 579
StyD4I	CCNGG	3 cut(s)	123, 459, 697
StyI	CCWWGG	3 cut(s)	302, 423, 436
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	261, 396
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	3 cut(s)	73, 216, 329
TatI	WGTACW	3 cut(s)	136, 333, 654
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	3 cut(s)	44, 93, 585
Tru9I	TTAA	3 cut(s)	44, 93, 585
TscAI	CASTG	4 cut(s)	38, 278, 292, 692
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	681, 734
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	47, 75, 359
TspGWI	ACGGA	2 cut(s)	236, 689
TspRI	CASTG	4 cut(s)	38, 278, 292, 692
Van91I	CCANNNNNTGG	2 cut(s)	460, 518
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	2 cut(s)	51, 253
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	2 cut(s)	78, 579
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.