Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010864

Physical Location & Seq

Genomic Coordinates Forward (+)

17504373 .. 17507858

Gene Structure 3486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAAATTGGCAGTTCCTTACAAATAGATAAATATACCGTAACAGAACAGACGAACGAATCTCAGAACCAGTTGTTCCCCTCCAGCGCAGCCTACCTGCCTCTGTCGCTCTGTCTGTCCCCTCTCTCTCTCTCTCTCCGCCCTTTTTATTCGCTGTTCAAATCTCCGGCGGCGACCCATCGCCGGAAAAATCGTGTCGAGCCGATGGAGGAGTCCTACCTGAACCCGTTCTCGGAGGAGACGACGTTTTACAACCGCATTGTGCTCGGCACCCTCGTCCCCAATAGAGTGTGGGACCCACTCCCCCACTTCTTCCAGACGTGGCTGCGCAACTACGTCGGCGGGACCTTGGTCTACCTCGTCTCCGGCTTCCTTTGGTGCCTCTACATTTACTACCTGAAACGCAATGTTTATCTCCCCAAAGATGCCATTCCCTCTAATAAAGCCATGCGTTTGCAAATATATGTTGCCATGAAGGCCATGCCTTGGTACAGTGCTCTTCCAACTGTTTCTGAGTACATGGTTGAAAATGGCTGGGCTAAGTGCTTTGCAAGAGTAAGTGATGTTGGTTGGCCCGCTTACCTCTTGTATTTAGCAATTTATCTTGTATTCGTGGAGTTCGGAATTTATTGGATGCACAGGGAGTTGCATGACATAAAACCTCTGTATAAATATCTTCATGCTACCCATCACATCTACAACAAGCAGAACACCCTCTCTCCGTTTGCTGGTTTGGCTTTTCACCCGATTGATGGGATACTACAGGCAGTTCCACATGTTTTAGCTCTATTTCTTGTACCAATGCATTTTACAACCCACATAGCGCTCCTATTTATCGAGGCCATATGGACAGCGAACATTCACGATTGCATCCACTCCAAAATATGGCCTGTCATGGGTGCCGGCTACCACACCATACATCATACTACATACCGCCATAACTATGGCCATTATACCATATGGATGGATTGGATGTGTGGAACGCTTCGTGACCCCTTGGACGATGAATCAAAGGTCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

341

Amino Acids

39.65

Weight (kDa)

8.43

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	199 - 328	1.7e-20	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02580 AT3G02590 AT3G02590
fragaria_vesca	FvH4_2g26170
malus_domestica	MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica	Prupe.3G144900_v2.0.a1
pyrus_communis	pycom09g17070 pycom17g24880
rosa_chinensis	RchiOBHm_Chr6g0294591
rosa_laevigata	RLG00000011856
rosa_multiflora	Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173180
rosa_rugosa	Rorug06G0246200
rosa_samantha	Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana	Rw6G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	105
AccB1I	GGYRCC	3 cut(s)	269, 378, 899
AccB7I	CCANNNNNTGG	2 cut(s)	486, 885
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	6 cut(s)	139, 170, 256, 342, 576, 934
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	1 cut(s)	624
AfaI	GTAC	3 cut(s)	491, 518, 798
AfeI	AGCGCT	1 cut(s)	825
AfiI	CCNNNNNNNGG	7 cut(s)	183, 232, 486, 728, 752, 885, 896
AflIII	ACRYGT	1 cut(s)	775
AgsI	TTSAA	2 cut(s)	160, 527
AjiI	CACGTC	1 cut(s)	321
AluBI	AGCT	1 cut(s)	785
AluI	AGCT	1 cut(s)	785
Alw21I	GWGCWC	2 cut(s)	267, 499
Alw26I	GTCTC	2 cut(s)	233, 367
Aor51HI	AGCGCT	1 cut(s)	825
AoxI	GGCC	5 cut(s)	477, 572, 840, 887, 946
ApeKI	GCWGC	2 cut(s)	89, 325
ApoI	RAATTY	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	3 cut(s)	89, 330, 826
AspS9I	GGNCC	4 cut(s)	295, 345, 573, 1015
AsuHPI	GGTGA	1 cut(s)	734
AvaII	GGWCC	3 cut(s)	295, 345, 1015
BalI	TGGCCA	1 cut(s)	948
BanI	GGYRCC	3 cut(s)	269, 378, 899
Bbv12I	GWGCWC	2 cut(s)	267, 499
BbvI	GCAGC	2 cut(s)	101, 312
BccI	CCATC	5 cut(s)	186, 199, 696, 746, 958
BcgI	CGANNNNNNTGC	4 cut(s)	247, 281, 319, 353
BciVI	GTATCC	1 cut(s)	750
BcoDI	GTCTC	2 cut(s)	233, 367
BfmI	CTRYAG	1 cut(s)	761
BfoI	RGCGCY	1 cut(s)	827
BfuAI	ACCTGC	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	750
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	90, 171, 326
BlsI	GCNGC	3 cut(s)	91, 172, 327
Bme18I	GGWCC	3 cut(s)	295, 345, 1015
BmgBI	CACGTC	1 cut(s)	321
BmgT120I	GGNCC	4 cut(s)	295, 345, 573, 1015
BmiI	GGNNCC	6 cut(s)	271, 296, 297, 346, 380, 901
BmsI	GCATC	3 cut(s)	415, 624, 879
BoxI	GACNNNNGTC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	348, 485, 996
BsaXI	ACNNNNNCTCC	6 cut(s)	230, 260, 347, 377, 703, 733
Bsc4I	CCNNNNNNNGG	7 cut(s)	183, 232, 486, 728, 752, 885, 896
Bse118I	RCCGGY	1 cut(s)	902
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	412
BseDI	CCNNGG	3 cut(s)	348, 485, 996
BseGI	GGATG	4 cut(s)	639, 870, 969, 978
BseLI	CCNNNNNNNGG	7 cut(s)	183, 232, 486, 728, 752, 885, 896
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	77, 504
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	2 cut(s)	224, 251
BseXI	GCAGC	2 cut(s)	101, 312
BseYI	CCCAGC	1 cut(s)	534
BshFI	GGCC	5 cut(s)	479, 574, 842, 889, 948
BshNI	GGYRCC	3 cut(s)	269, 378, 899
BsiHKAI	GWGCWC	2 cut(s)	267, 499
BsiSI	CCGG	4 cut(s)	167, 184, 366, 903
BslFI	GGGAC	4 cut(s)	103, 263, 308, 358
BslI	CCNNNNNNNGG	7 cut(s)	183, 232, 486, 728, 752, 885, 896
BsmAI	GTCTC	2 cut(s)	233, 367
BsmBI	CGTCTC	2 cut(s)	233, 367
BsmFI	GGGAC	4 cut(s)	103, 263, 308, 358
BsnI	GGCC	5 cut(s)	479, 574, 842, 889, 948
Bsp1286I	GDGCHC	2 cut(s)	267, 499
BspACI	CCGC	6 cut(s)	139, 170, 256, 342, 576, 934
BspANI	GGCC	5 cut(s)	479, 574, 842, 889, 948
BspCNI	CTCAG	2 cut(s)	76, 505
BspLI	GGNNCC	6 cut(s)	271, 296, 297, 346, 380, 901
BspMI	ACCTGC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	504
BspT107I	GGYRCC	3 cut(s)	269, 378, 899
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	902
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	3 cut(s)	348, 485, 996
BssT1I	CCWWGG	3 cut(s)	348, 485, 996
Bst4CI	ACNGT	3 cut(s)	40, 494, 508
Bst6I	CTCTTC	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	576, 904
BstDEI	CTNAG	3 cut(s)	63, 513, 540
BstF5I	GGATG	4 cut(s)	639, 870, 969, 978
BstH2I	RGCGCY	1 cut(s)	827
BstHHI	GCGC	3 cut(s)	89, 330, 826
BstMAI	GTCTC	2 cut(s)	233, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 476, 734
BstNSI	RCATGY	1 cut(s)	779
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	761
BstV1I	GCAGC	2 cut(s)	101, 312
BstXI	CCANNNNNNTGG	2 cut(s)	944, 964
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	5 cut(s)	479, 574, 842, 889, 948
BtgZI	GCGATG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	321
BtsCI	GGATG	4 cut(s)	639, 870, 969, 978
BtsIMutI	CAGTG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	576, 904
CfoI	GCGC	3 cut(s)	89, 330, 826
Cfr10I	RCCGGY	1 cut(s)	902
Cfr13I	GGNCC	4 cut(s)	295, 345, 573, 1015
Csp6I	GTAC	3 cut(s)	490, 517, 797
CviAII	CATG	8 cut(s)	448, 472, 481, 520, 650, 680, 776, 895
CviQI	GTAC	3 cut(s)	490, 517, 797
DdeI	CTNAG	3 cut(s)	63, 513, 540
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	3 cut(s)	348, 485, 996
Eco47I	GGWCC	3 cut(s)	295, 345, 1015
Eco47III	AGCGCT	1 cut(s)	825
EcoO109I	RGGNCCY	3 cut(s)	295, 345, 1015
EcoT14I	CCWWGG	3 cut(s)	348, 485, 996
EcoT22I	ATGCAT	1 cut(s)	807
ErhI	CCWWGG	3 cut(s)	348, 485, 996
Esp3I	CGTCTC	2 cut(s)	233, 367
FaeI	CATG	8 cut(s)	451, 475, 484, 523, 653, 683, 779, 898
FaqI	GGGAC	4 cut(s)	103, 263, 308, 358
FatI	CATG	8 cut(s)	447, 471, 480, 519, 649, 679, 775, 894
FauI	CCCGC	2 cut(s)	335, 583
FauNDI	CATATG	2 cut(s)	845, 959
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	90, 171, 326
FokI	GGATG	4 cut(s)	646, 857, 976, 985
Fsp4HI	GCNGC	3 cut(s)	90, 171, 326
FspI	TGCGCA	1 cut(s)	329
GlaI	GCGC	3 cut(s)	88, 329, 825
GluI	GCNGC	3 cut(s)	90, 171, 326
GsaI	CCCAGC	1 cut(s)	538
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	827
HaeIII	GGCC	5 cut(s)	479, 574, 842, 889, 948
HapII	CCGG	4 cut(s)	167, 184, 366, 903
HhaI	GCGC	3 cut(s)	89, 330, 826
Hin1II	CATG	8 cut(s)	451, 475, 484, 523, 653, 683, 779, 898
Hin6I	GCGC	3 cut(s)	87, 328, 824
HinP1I	GCGC	3 cut(s)	87, 328, 824
HinfI	GANTC	3 cut(s)	59, 212, 1007
HpaII	CCGG	4 cut(s)	167, 184, 366, 903
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	4 cut(s)	66, 235, 514, 623
Hpy188III	TCNNGA	3 cut(s)	316, 863, 989
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	2 cut(s)	247, 341
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	3 cut(s)	40, 494, 508
HpyCH4IV	ACGT	3 cut(s)	245, 320, 336
HpyCH4V	TGCA	6 cut(s)	457, 551, 637, 649, 805, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 476, 734
HpyF3I	CTNAG	3 cut(s)	63, 513, 540
HpySE526I	ACGT	3 cut(s)	245, 320, 336
Hsp92II	CATG	8 cut(s)	451, 475, 484, 523, 653, 683, 779, 898
HspAI	GCGC	3 cut(s)	87, 328, 824
KflI	GGGWCCC	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	902
KroNI	GCCGGC	1 cut(s)	904
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	831
Lsp1109I	GCAGC	2 cut(s)	101, 312
LweI	GCATC	3 cut(s)	415, 624, 879
MaeII	ACGT	3 cut(s)	245, 320, 336
MaeIII	GTNAC	2 cut(s)	40, 989
MboII	GAAGA	3 cut(s)	304, 491, 668
MhlI	GDGCHC	2 cut(s)	267, 499
MlsI	TGGCCA	1 cut(s)	948
MluCI	AATT	3 cut(s)	6, 597, 624
MluNI	TGGCCA	1 cut(s)	948
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	527
Mox20I	TGGCCA	1 cut(s)	948
Mph1103I	ATGCAT	1 cut(s)	807
MroNI	GCCGGC	1 cut(s)	902
MroXI	GAANNNNTTC	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	948
MslI	CAYNNNNRTG	2 cut(s)	942, 962
Msp20I	TGGCCA	1 cut(s)	948
MspI	CCGG	4 cut(s)	167, 184, 366, 903
MwoI	GCNNNNNNNGC	3 cut(s)	106, 476, 734
NaeI	GCCGGC	1 cut(s)	904
NdeI	CATATG	2 cut(s)	845, 959
NgoMIV	GCCGGC	1 cut(s)	902
NlaIII	CATG	8 cut(s)	451, 475, 484, 523, 653, 683, 779, 898
NlaIV	GGNNCC	6 cut(s)	271, 296, 297, 346, 380, 901
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	989
NsbI	TGCGCA	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	807
NspI	RCATGY	1 cut(s)	779
PciI	ACATGT	1 cut(s)	775
PciSI	GCTCTTC	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	2 cut(s)	239, 273
PdiI	GCCGGC	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	59, 1007
PflMI	CCANNNNNTGG	2 cut(s)	486, 885
PkrI	GCNGC	3 cut(s)	91, 172, 327
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	3 cut(s)	295, 345, 1015
PscI	ACATGT	1 cut(s)	775
PshAI	GACNNNNGTC	1 cut(s)	350
Psp5II	RGGWCCY	3 cut(s)	295, 345, 1015
PspFI	CCCAGC	1 cut(s)	534
PspN4I	GGNNCC	6 cut(s)	271, 296, 297, 346, 380, 901
PspPI	GGNCC	4 cut(s)	295, 345, 573, 1015
PspPPI	RGGWCCY	3 cut(s)	295, 345, 1015
RsaI	GTAC	3 cut(s)	491, 518, 798
RsaNI	GTAC	3 cut(s)	490, 517, 797
RseI	CAYNNNNRTG	2 cut(s)	942, 962
SapI	GCTCTTC	1 cut(s)	504
SatI	GCNGC	3 cut(s)	90, 171, 326
Sau96I	GGNCC	4 cut(s)	295, 345, 573, 1015
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	267, 499
SfaNI	GCATC	3 cut(s)	415, 624, 879
SfcI	CTRYAG	1 cut(s)	761
SinI	GGWCC	3 cut(s)	295, 345, 1015
SmiMI	CAYNNNNRTG	2 cut(s)	942, 962
Sse9I	AATT	3 cut(s)	6, 597, 624
SsiI	CCGC	6 cut(s)	139, 170, 256, 342, 576, 934
StyI	CCWWGG	3 cut(s)	348, 485, 996
TaaI	ACNGT	3 cut(s)	40, 494, 508
TaiI	ACGT	3 cut(s)	248, 323, 339
TaqI	TCGA	2 cut(s)	198, 837
TasI	AATT	3 cut(s)	6, 597, 624
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	59, 1007
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	989
TseI	GCWGC	2 cut(s)	89, 325
Tsp45I	GTSAC	1 cut(s)	989
TspDTI	ATGAA	4 cut(s)	17, 488, 668, 1020
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	499
Van91I	CCANNNNNTGG	2 cut(s)	486, 885
VpaK11BI	GGWCC	3 cut(s)	295, 345, 1015
XapI	RAATTY	1 cut(s)	624
XceI	RCATGY	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.