Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

1657798 .. 1658513

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTGCCGAAAGGAAGAAAAGTTTCAGGGCGAGGAGAGGCCGTGGCGGCGAACTATGCGTTCGGGCCACTCGAAGATGACGTCATCATCAAACACAGACTTCTCACTCGGACCACCACCACGAGAGGCGAACCGCCATTGAAGAAGCTCCAGAAGAAGTTCACGTCCCTGTTCGTCGAGCTCGACAAGAACGATGACAACTTCGCCGACTGCGACAAGCTCGCCAAGGCTTTCCTCCAGGAGCTCAACACGTTCGAGATTCCGCTCCTCAAGAGCAAAGCCGTCGTGGATGCGAATCTCCGGGAGAAGCACAATTTTGACGAGCTGAGGGAGGAGATTAACCGGCAGATTGTGCAGGCGAAGACCGACATTGAGATGCTCAAGAAGCAACTCGAGGAGAGTAAGATCGAAAGAAGGCACAAGGAGGAGTGTGAGTCGATCAGGAAATTGATTGCTACGCAGCCGCCGCGATCGGAGACGCTCAACGATCATATCAGATTTGGAGAAGGAGATTGCGGCATTGGATGCGGAGAACACCGCGAGTTCGCGGACGCTGGAGCTGAGGAAGAAGCAGTTTGCTCTGCTCCTGCATGTGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

201

Amino Acids

22.51

Weight (kDa)

5.84

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THOC7	PF05615	27 - 161	3.5e-33	Tho complex subunit 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	265
AccII	CGCG	3 cut(s)	469, 540, 548
AciI	CCGC	9 cut(s)	47, 134, 263, 464, 467, 516, 528, 538, 548
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	6 cut(s)	148, 181, 220, 244, 325, 560
AluI	AGCT	6 cut(s)	148, 181, 220, 244, 325, 560
Alw21I	GWGCWC	2 cut(s)	183, 246
Alw26I	GTCTC	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	39, 65
ApeKI	GCWGC	2 cut(s)	4, 460
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
Asp700I	GAANNNNTTC	2 cut(s)	22, 158
AspS9I	GGNCC	2 cut(s)	65, 111
AsuC2I	CCSGG	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	183, 246
BauI	CACGAG	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	2 cut(s)	183, 246
BbvCI	CCTCAGC	2 cut(s)	326, 561
BbvI	GCAGC	1 cut(s)	472
BceAI	ACGGC	2 cut(s)	26, 266
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	6 cut(s)	5, 48, 461, 464, 467, 517
BlsI	GCNGC	6 cut(s)	6, 49, 462, 465, 468, 518
Bme1390I	CCNGG	2 cut(s)	239, 302
Bme18I	GGWCC	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	65, 111
BmrFI	CCNGG	2 cut(s)	239, 302
BmsI	GCATC	3 cut(s)	280, 366, 515
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	3 cut(s)	134, 221, 576
Bpu10I	CCTNAGC	2 cut(s)	326, 561
BpuEI	CTTGAG	2 cut(s)	254, 365
BpuMI	CCSGG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	42, 225
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 419, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse118I	RCCGGY	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	42, 225
BseGI	GGATG	2 cut(s)	295, 530
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMII	CTCAG	2 cut(s)	317, 552
BseRI	GAGGAG	5 cut(s)	48, 257, 347, 410, 440
BseXI	GCAGC	1 cut(s)	472
BsgI	GTGCAG	1 cut(s)	374
Bsh1236I	CGCG	3 cut(s)	469, 540, 548
Bsh1285I	CGRYCG	1 cut(s)	473
BshFI	GGCC	2 cut(s)	41, 67
BsiEI	CGRYCG	1 cut(s)	473
BsiHKAI	GWGCWC	2 cut(s)	183, 246
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	301, 343
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	1 cut(s)	470
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	41, 67
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	183, 246
Bsp143I	GATC	4 cut(s)	405, 438, 470, 487
BspACI	CCGC	9 cut(s)	47, 134, 263, 464, 467, 516, 528, 538, 548
BspANI	GGCC	2 cut(s)	41, 67
BspCNI	CTCAG	2 cut(s)	318, 553
BspFNI	CGCG	3 cut(s)	469, 540, 548
BsrBI	CCGCTC	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	42, 225
BssMI	GATC	4 cut(s)	405, 438, 470, 487
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	2 cut(s)	352, 525
BstC8I	GCNNGC	2 cut(s)	222, 357
BstDEI	CTNAG	2 cut(s)	326, 561
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	295, 530
BstFNI	CGCG	3 cut(s)	469, 540, 548
BstKTI	GATC	4 cut(s)	408, 441, 473, 490
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	4 cut(s)	405, 438, 470, 487
BstMCI	CGRYCG	1 cut(s)	473
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 56, 352, 385, 466, 525
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	237, 300
BstUI	CGCG	3 cut(s)	469, 540, 548
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	41, 67
BtgI	CCRYGG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	295, 530
Cac8I	GCNNGC	2 cut(s)	222, 357
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	65, 111
CseI	GACGC	2 cut(s)	487, 560
CviAII	CATG	1 cut(s)	591
DdeI	CTNAG	2 cut(s)	326, 561
DpnI	GATC	4 cut(s)	407, 440, 472, 489
DpnII	GATC	4 cut(s)	405, 438, 470, 487
Ecl136II	GAGCTC	2 cut(s)	181, 244
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	183, 246
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	2 cut(s)	181, 244
Eco88I	CYCGRG	1 cut(s)	392
EcoICRI	GAGCTC	2 cut(s)	181, 244
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	183, 246
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	1 cut(s)	594
FaiI	YATR	3 cut(s)	57, 492, 592
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	590
Fnu4HI	GCNGC	6 cut(s)	5, 48, 461, 464, 467, 517
FokI	GGATG	2 cut(s)	302, 537
FriOI	GRGCYC	2 cut(s)	183, 246
Fsp4HI	GCNGC	6 cut(s)	5, 48, 461, 464, 467, 517
GluI	GCNGC	6 cut(s)	5, 48, 461, 464, 467, 517
GsuI	CTGGAG	3 cut(s)	134, 221, 576
HaeIII	GGCC	2 cut(s)	41, 67
HapII	CCGG	2 cut(s)	301, 343
HgaI	GACGC	2 cut(s)	487, 560
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	594
HinfI	GANTC	3 cut(s)	259, 295, 434
HpaII	CCGG	2 cut(s)	301, 343
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	111, 475, 497
Hpy188III	TCNNGA	5 cut(s)	151, 256, 271, 382, 442
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	2 cut(s)	179, 287
HpyAV	CCTTC	2 cut(s)	408, 500
HpyCH4IV	ACGT	3 cut(s)	81, 164, 251
HpyCH4V	TGCA	2 cut(s)	355, 590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 56, 352, 385, 466, 525
HpyF3I	CTNAG	2 cut(s)	326, 561
HpySE526I	ACGT	3 cut(s)	81, 164, 251
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	594
Kzo9I	GATC	4 cut(s)	405, 438, 470, 487
LmnI	GCTCC	5 cut(s)	153, 241, 270, 557, 589
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	3 cut(s)	280, 366, 515
MaeII	ACGT	3 cut(s)	81, 164, 251
MalI	GATC	4 cut(s)	407, 440, 472, 489
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	4 cut(s)	405, 438, 470, 487
MboII	GAAGA	6 cut(s)	27, 86, 154, 166, 373, 578
MhlI	GDGCHC	2 cut(s)	183, 246
MluCI	AATT	2 cut(s)	313, 446
MlyI	GAGTC	1 cut(s)	443
MroXI	GAANNNNTTC	2 cut(s)	22, 158
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	2 cut(s)	301, 343
MspR9I	CCNGG	2 cut(s)	239, 302
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	3 cut(s)	469, 540, 548
MwoI	GCNNNNNNNGC	6 cut(s)	47, 56, 352, 385, 466, 525
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	4 cut(s)	405, 438, 470, 487
NlaIII	CATG	1 cut(s)	594
NspI	RCATGY	1 cut(s)	594
PaeR7I	CTCGAG	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	5 cut(s)	69, 78, 180, 189, 210
PdmI	GAANNNNTTC	2 cut(s)	22, 158
PfeI	GAWTC	2 cut(s)	259, 295
PfoI	TCCNGGA	2 cut(s)	237, 300
PkrI	GCNGC	6 cut(s)	6, 49, 462, 465, 468, 518
Ple19I	CGATCG	1 cut(s)	473
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp124BI	GAGCTC	2 cut(s)	183, 246
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	65, 111
PspXI	VCTCGAGB	1 cut(s)	392
PvuI	CGATCG	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	2 cut(s)	183, 246
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	6 cut(s)	5, 48, 461, 464, 467, 517
Sau3AI	GATC	4 cut(s)	405, 438, 470, 487
Sau96I	GGNCC	2 cut(s)	65, 111
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	239, 302
SduI	GDGCHC	2 cut(s)	183, 246
SetI	ASST	9 cut(s)	84, 150, 167, 183, 222, 246, 254, 327, 562
SfaNI	GCATC	3 cut(s)	280, 366, 515
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	3 cut(s)	269, 380, 392
SmoI	CTYRAG	3 cut(s)	269, 380, 392
Sse9I	AATT	2 cut(s)	313, 446
SsiI	CCGC	9 cut(s)	47, 134, 263, 464, 467, 516, 528, 538, 548
SstI	GAGCTC	2 cut(s)	183, 246
StyD4I	CCNGG	2 cut(s)	237, 300
StyI	CCWWGG	1 cut(s)	225
TaiI	ACGT	3 cut(s)	84, 167, 254
TaqI	TCGA	7 cut(s)	72, 177, 183, 255, 393, 408, 437
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	313, 446
TauI	GCSGC	4 cut(s)	50, 466, 469, 519
TfiI	GAWTC	2 cut(s)	259, 295
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	2 cut(s)	4, 460
VpaK11BI	GGWCC	1 cut(s)	111
XceI	RCATGY	1 cut(s)	594
XhoI	CTCGAG	1 cut(s)	392
XmnI	GAANNNNTTC	2 cut(s)	22, 158
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.