Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

2747141 .. 2750303

Gene Structure 3163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCCATCAAGACACTTGGTCTAGTTAAAGGTTGTCTTCCAGAGGAATTAAAGAAGGTCACCCCATTGAAGGGGGCCATGACTAATGAGGTGTATCAAATAAGTTGGCCTACGAGGAACGGTGGTGACCTTTTCCGGAAAGTTCTGGTTCGGGTTTATGGTGAAGGAGTTGAAGTGTTTTTTAATCGGGAGGATGAAGTTCAGACGTTCGAGTGCATGTCCAAGCATGGCCAGGGGCCGCGTCTTCTTGGGCGATTTGCAGAGGGACGGGTTGAGGAGTTCATTCACGCTAGAACGCTATCAGCTGCTGACCTTCGTGATCCCGAAATATCTGCTATTATAGCAGCTAAGCTGAGAGAGTTCCACAATTTGGATATGCCTGGTCCAAGAAATGTAGTCCTTTGGGATAGAATGAGGAACTGGCTCAATGAGGCAAAAAACTTGTGTTCGATAAAAGACATACAGGAATTCGGCTTGGATACTTTGGAAGAGGAAATTAGTATGTTAGAGAAAGAACTGTCACAGGACTATCAAGAAATTGGGTTCTGTCACAATGACCTGCAGTACGGCAACATAATGATGGATGAAGAGACCAGATTAATCACTATAATTGATTATGAATATGCCAGTTACAATCCTGTCGCTTATGACCTTGCAAATCATTTCTGTGAAATGGTAGCAAACTACCACTCTGAGACACCTCACGTTTTGGACTACAGGAATTATCCAGGTCTGGAGGAGCGCCAGAGATTTGTCCGTGCGTATCTGAGCTCTGCAGGTTGCGAACCCAGTGATGCTGAGGTGGAGCAGCTAGTTGAAATAACAGAGAAGTACACTTTGGCCAACCATCTCTTTTGGGGCTTATGGGGAATAATTTCGGGTCATGTGAACAAAATTGATTTTGACTACACGGAGTATGCGAGGCAGAGGTTTCAGCAGTACTGGTTGAGGAAGCCGGCATTGTTGGGTTCTTCAGGTGATTCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

330

Amino Acids

38.06

Weight (kDa)

5.02

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	20 - 315	2.8e-98	Choline/ethanolamine kinase
APH	PF01636	20 - 225	3.1e-15	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	567, 767
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	1 cut(s)	241
AccIII	TCCGGA	1 cut(s)	135
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	3 cut(s)	3, 229, 840
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	957
AfaI	GTAC	3 cut(s)	566, 833, 941
AfiI	CCNNNNNNNGG	3 cut(s)	70, 71, 370
AgsI	TTSAA	3 cut(s)	70, 173, 818
AhdI	GACNNNNNGTC	1 cut(s)	18
AjnI	CCWGG	3 cut(s)	231, 379, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
AluBI	AGCT	5 cut(s)	305, 347, 352, 771, 811
AluI	AGCT	5 cut(s)	305, 347, 352, 771, 811
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	2 cut(s)	584, 689
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	308
Aor13HI	TCCGGA	1 cut(s)	135
AoxI	GGCC	6 cut(s)	3, 75, 107, 229, 236, 840
ApeKI	GCWGC	3 cut(s)	305, 344, 808
ApoI	RAATTY	1 cut(s)	467
AseI	ATTAAT	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	874
AspLEI	GCGC	1 cut(s)	744
AspS9I	GGNCC	3 cut(s)	75, 236, 383
AsuHPI	GGTGA	4 cut(s)	52, 137, 173, 989
AvaII	GGWCC	1 cut(s)	383
BalI	TGGCCA	3 cut(s)	5, 231, 842
BanII	GRGCYC	1 cut(s)	773
BbsI	GAAGAC	2 cut(s)	29, 236
Bbv12I	GWGCWC	1 cut(s)	773
BbvCI	CCTCAGC	1 cut(s)	798
BbvI	GCAGC	3 cut(s)	292, 356, 820
BccI	CCATC	3 cut(s)	14, 574, 855
BceAI	ACGGC	1 cut(s)	583
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	3 cut(s)	233, 381, 729
BciVI	GTATCC	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	584, 689
BfaI	CTAG	3 cut(s)	23, 291, 812
BfmI	CTRYAG	3 cut(s)	560, 715, 774
BfoI	RGCGCY	1 cut(s)	745
BfuAI	ACCTGC	2 cut(s)	567, 767
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	239, 306, 345, 809
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	4 cut(s)	240, 307, 346, 810
BmcAI	AGTACT	1 cut(s)	941
Bme1390I	CCNGG	3 cut(s)	233, 381, 729
Bme18I	GGWCC	1 cut(s)	383
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmgT120I	GGNCC	3 cut(s)	75, 236, 383
BmiI	GGNNCC	2 cut(s)	76, 237
BmrFI	CCNGG	3 cut(s)	233, 381, 729
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	783
BpiI	GAAGAC	2 cut(s)	29, 236
BpmI	CTGGAG	1 cut(s)	755
Bpu10I	CCTNAGC	1 cut(s)	798
Bpu1102I	GCTNAGC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 71, 370
Bse118I	RCCGGY	1 cut(s)	955
Bse1I	ACTGG	4 cut(s)	425, 627, 789, 947
BseAI	TCCGGA	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	233, 381, 729
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	2 cut(s)	199, 589
BseLI	CCNNNNNNNGG	3 cut(s)	70, 71, 370
BseMII	CTCAG	4 cut(s)	344, 684, 758, 789
BseNI	ACTGG	4 cut(s)	425, 627, 789, 947
BseRI	GAGGAG	2 cut(s)	290, 752
BseXI	GCAGC	3 cut(s)	292, 356, 820
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	6 cut(s)	5, 77, 109, 231, 238, 842
BsiHKAI	GWGCWC	1 cut(s)	773
BsiSI	CCGG	2 cut(s)	136, 956
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	70, 71, 370
BsmAI	GTCTC	2 cut(s)	584, 689
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	6 cut(s)	5, 77, 109, 231, 238, 842
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp13I	TCCGGA	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	319
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	6 cut(s)	5, 77, 109, 231, 238, 842
BspCNI	CTCAG	4 cut(s)	345, 685, 759, 790
BspEI	TCCGGA	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	76, 237
BspMAI	CTGCAG	2 cut(s)	564, 778
BspMI	ACCTGC	2 cut(s)	567, 767
BspPI	GGATC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	955
BsrI	ACTGG	4 cut(s)	425, 627, 789, 947
BssAI	RCCGGY	1 cut(s)	955
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	319
Bst2UI	CCWGG	3 cut(s)	233, 381, 729
Bst4CI	ACNGT	2 cut(s)	122, 519
Bst6I	CTCTTC	2 cut(s)	483, 582
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	5 cut(s)	348, 353, 693, 767, 798
BstEII	GGTNACC	2 cut(s)	58, 125
BstF5I	GGATG	2 cut(s)	199, 589
BstFNI	CGCG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	2 cut(s)	584, 689
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	3 cut(s)	233, 381, 729
BstNSI	RCATGY	1 cut(s)	220
BstPI	GGTNACC	2 cut(s)	58, 125
BstSCI	CCNGG	3 cut(s)	231, 379, 727
BstSFI	CTRYAG	3 cut(s)	560, 715, 774
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	292, 356, 820
BstV2I	GAAGAC	2 cut(s)	29, 236
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	6 cut(s)	5, 77, 109, 231, 238, 842
BtsCI	GGATG	2 cut(s)	199, 589
BtsIMutI	CAGTG	1 cut(s)	796
BveI	ACCTGC	2 cut(s)	567, 767
Cac8I	GCNNGC	1 cut(s)	957
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	1 cut(s)	744
Cfr10I	RCCGGY	1 cut(s)	955
Cfr13I	GGNCC	3 cut(s)	75, 236, 383
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	3 cut(s)	565, 832, 940
CviAII	CATG	4 cut(s)	79, 217, 227, 884
CviQI	GTAC	3 cut(s)	565, 832, 940
DdeI	CTNAG	5 cut(s)	348, 353, 693, 767, 798
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DriI	GACNNNNNGTC	1 cut(s)	18
EaeI	YGGCCR	3 cut(s)	3, 229, 840
Eam1104I	CTCTTC	2 cut(s)	483, 582
Eam1105I	GACNNNNNGTC	1 cut(s)	18
EarI	CTCTTC	2 cut(s)	483, 582
Ecl136II	GAGCTC	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	773
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	957
Eco91I	GGTNACC	2 cut(s)	58, 125
EcoICRI	GAGCTC	1 cut(s)	771
EcoO65I	GGTNACC	2 cut(s)	58, 125
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	231, 379, 727
EcoT38I	GRGCYC	1 cut(s)	773
FaeI	CATG	4 cut(s)	82, 220, 230, 887
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	4 cut(s)	78, 216, 226, 883
Fnu4HI	GCNGC	4 cut(s)	239, 306, 345, 809
FokI	GGATG	2 cut(s)	206, 596
FriOI	GRGCYC	1 cut(s)	773
Fsp4HI	GCNGC	4 cut(s)	239, 306, 345, 809
FspBI	CTAG	3 cut(s)	23, 291, 812
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	4 cut(s)	239, 306, 345, 809
GsuI	CTGGAG	1 cut(s)	755
HaeII	RGCGCY	1 cut(s)	745
HaeIII	GGCC	6 cut(s)	5, 77, 109, 231, 238, 842
HapII	CCGG	2 cut(s)	136, 956
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	4 cut(s)	82, 220, 230, 887
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	1 cut(s)	980
HpaII	CCGG	2 cut(s)	136, 956
HphI	GGTGA	4 cut(s)	52, 137, 173, 989
Hpy166II	GTNNAC	2 cut(s)	834, 889
Hpy188I	TCNGA	3 cut(s)	204, 694, 768
Hpy188III	TCNNGA	8 cut(s)	10, 41, 136, 188, 317, 323, 533, 734
Hpy8I	GTNNAC	2 cut(s)	834, 889
HpyAV	CCTTC	4 cut(s)	49, 64, 158, 323
HpyCH4III	ACNGT	2 cut(s)	122, 519
HpyCH4IV	ACGT	2 cut(s)	206, 705
HpyCH4V	TGCA	5 cut(s)	216, 260, 562, 656, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	5 cut(s)	348, 353, 693, 767, 798
HpySE526I	ACGT	2 cut(s)	206, 705
Hsp92II	CATG	4 cut(s)	82, 220, 230, 887
HspAI	GCGC	1 cut(s)	742
Kpn2I	TCCGGA	1 cut(s)	135
KroI	GCCGGC	1 cut(s)	955
KroNI	GCCGGC	1 cut(s)	957
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	739, 805
Lsp1109I	GCAGC	3 cut(s)	292, 356, 820
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	3 cut(s)	23, 291, 812
MaeII	ACGT	2 cut(s)	206, 705
MaeIII	GTNAC	5 cut(s)	58, 125, 519, 548, 629
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	5 cut(s)	29, 236, 500, 599, 963
MhlI	GDGCHC	1 cut(s)	773
MlsI	TGGCCA	3 cut(s)	5, 231, 842
MluCI	AATT	9 cut(s)	47, 367, 467, 495, 537, 609, 721, 873, 894
MluNI	TGGCCA	3 cut(s)	5, 231, 842
Mox20I	TGGCCA	3 cut(s)	5, 231, 842
MroI	TCCGGA	1 cut(s)	135
MroNI	GCCGGC	1 cut(s)	955
MroXI	GAANNNNTTC	1 cut(s)	874
MscI	TGGCCA	3 cut(s)	5, 231, 842
MseI	TTAA	4 cut(s)	27, 50, 183, 599
MslI	CAYNNNNRTG	2 cut(s)	578, 666
Msp20I	TGGCCA	3 cut(s)	5, 231, 842
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	2 cut(s)	136, 956
MspR9I	CCNGG	3 cut(s)	233, 381, 729
MvaI	CCWGG	3 cut(s)	233, 381, 729
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	341
NaeI	GCCGGC	1 cut(s)	957
NdeII	GATC	1 cut(s)	319
NgoMIV	GCCGGC	1 cut(s)	955
NlaIII	CATG	4 cut(s)	82, 220, 230, 887
NlaIV	GGNNCC	2 cut(s)	76, 237
NmuCI	GTSAC	4 cut(s)	58, 125, 519, 548
NspI	RCATGY	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	917
PdiI	GCCGGC	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	874
PfeI	GAWTC	1 cut(s)	980
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	4 cut(s)	240, 307, 346, 810
PshBI	ATTAAT	1 cut(s)	599
Psp124BI	GAGCTC	1 cut(s)	773
Psp6I	CCWGG	3 cut(s)	231, 379, 727
PspEI	GGTNACC	2 cut(s)	58, 125
PspGI	CCWGG	3 cut(s)	231, 379, 727
PspN4I	GGNNCC	2 cut(s)	76, 237
PspPI	GGNCC	3 cut(s)	75, 236, 383
PstI	CTGCAG	2 cut(s)	564, 778
PstNI	CAGNNNCTG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	3 cut(s)	566, 833, 941
RsaNI	GTAC	3 cut(s)	565, 832, 940
RseI	CAYNNNNRTG	2 cut(s)	578, 666
SacI	GAGCTC	1 cut(s)	773
SaqAI	TTAA	4 cut(s)	27, 50, 183, 599
SatI	GCNGC	4 cut(s)	239, 306, 345, 809
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	3 cut(s)	75, 236, 383
ScaI	AGTACT	1 cut(s)	941
ScrFI	CCNGG	3 cut(s)	233, 381, 729
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	3 cut(s)	560, 715, 774
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	578, 666
Sse9I	AATT	9 cut(s)	47, 367, 467, 495, 537, 609, 721, 873, 894
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	3 cut(s)	23, 291, 812
SstI	GAGCTC	1 cut(s)	773
StyD4I	CCNGG	3 cut(s)	231, 379, 727
TaaI	ACNGT	2 cut(s)	122, 519
TaiI	ACGT	2 cut(s)	209, 708
TaqI	TCGA	2 cut(s)	210, 449
TasI	AATT	9 cut(s)	47, 367, 467, 495, 537, 609, 721, 873, 894
TatI	WGTACW	2 cut(s)	831, 939
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	980
Tru1I	TTAA	4 cut(s)	27, 50, 183, 599
Tru9I	TTAA	4 cut(s)	27, 50, 183, 599
TscAI	CASTG	1 cut(s)	796
TseFI	GTSAC	4 cut(s)	58, 125, 519, 548
TseI	GCWGC	3 cut(s)	305, 344, 808
Tsp45I	GTSAC	4 cut(s)	58, 125, 519, 548
TspDTI	ATGAA	4 cut(s)	210, 271, 600, 633
TspGWI	ACGGA	2 cut(s)	746, 926
TspRI	CASTG	1 cut(s)	796
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	874
XspI	CTAG	3 cut(s)	23, 291, 812
ZrmI	AGTACT	1 cut(s)	941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.