Embryogenesis-associated protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G34340 AT5G49950 |
| fragaria_vesca | FvH4_2g12290 FvH4_2g12290 FvH4_4g02600 |
| malus_domestica | MD05G1040100.v1.1 MD10G1046100.v1.1 MD13G1206800.v1.1 MD16G1208100.v1.1 |
| prunus_persica | Prupe.1G030400_v2.0.a1 Prupe.8G053500_v2.0.a1 |
| pyrus_communis | pycom10g03230 pycom16g17540 |
| rosa_chinensis | RchiOBHm_Chr6g0272221 RchiOBHm_Chr6g0272241 RchiOBHm_Chr6g0272251 |
| rosa_laevigata | RLG00000013686 |
| rosa_multiflora | Rmu_sc0009074.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00196460 |
| rosa_rugosa | Rorug06G0067400 |
| rosa_samantha | Rh6AG183800 Rh6AG183900 Rh6BG187100 Rh6BG187200 Rh6CG185200 Rh6CG185400 Rh6DG176900 Rh6DG177200 |
| rosa_wichuraiana | Rw6G015850 Rw6G015870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 633 |
| AarI | CACCTGC | 1 cut(s) | 998 |
| AatII | GACGTC | 1 cut(s) | 246 |
| Acc36I | ACCTGC | 1 cut(s) | 998 |
| AccB1I | GGYRCC | 2 cut(s) | 392, 728 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1128, 1674, 1685 |
| AccII | CGCG | 1 cut(s) | 122 |
| AciI | CCGC | 4 cut(s) | 183, 198, 340, 1436 |
| AclI | AACGTT | 1 cut(s) | 1359 |
| AclWI | GGATC | 2 cut(s) | 1094, 1438 |
| AcoI | YGGCCR | 1 cut(s) | 1676 |
| AcsI | RAATTY | 5 cut(s) | 155, 369, 1004, 1257, 1726 |
| AcuI | CTGAAG | 2 cut(s) | 172, 1314 |
| AcyI | GRCGYC | 2 cut(s) | 243, 287 |
| AfaI | GTAC | 4 cut(s) | 1039, 1233, 1287, 1428 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 34, 258, 782, 1128, 1674, 1685 |
| AgsI | TTSAA | 6 cut(s) | 155, 217, 550, 890, 1202, 1433 |
| AhlI | ACTAGT | 1 cut(s) | 1589 |
| AjnI | CCWGG | 4 cut(s) | 168, 272, 499, 1112 |
| AluBI | AGCT | 6 cut(s) | 22, 357, 794, 872, 1382, 1720 |
| AluI | AGCT | 6 cut(s) | 22, 357, 794, 872, 1382, 1720 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| Alw26I | GTCTC | 3 cut(s) | 208, 1004, 1477 |
| AlwI | GGATC | 2 cut(s) | 1094, 1438 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1035 |
| AoxI | GGCC | 6 cut(s) | 341, 838, 883, 1306, 1345, 1676 |
| ApeKI | GCWGC | 2 cut(s) | 779, 1382 |
| ApoI | RAATTY | 5 cut(s) | 155, 369, 1004, 1257, 1726 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 372, 1122 |
| AspLEI | GCGC | 2 cut(s) | 927, 1035 |
| AspS9I | GGNCC | 5 cut(s) | 172, 811, 1307, 1324, 1346 |
| AsuHPI | GGTGA | 4 cut(s) | 172, 505, 836, 1309 |
| AvaII | GGWCC | 3 cut(s) | 172, 811, 1324 |
| BalI | TGGCCA | 1 cut(s) | 1678 |
| BanI | GGYRCC | 2 cut(s) | 392, 728 |
| BanII | GRGCYC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BbvCI | CCTCAGC | 1 cut(s) | 413 |
| BbvI | GCAGC | 2 cut(s) | 766, 1369 |
| BccI | CCATC | 9 cut(s) | 380, 561, 636, 755, 1288, 1364, 1399, 1543, 1670 |
| BceAI | ACGGC | 4 cut(s) | 185, 274, 825, 1370 |
| BciT130I | CCWGG | 4 cut(s) | 170, 274, 501, 1114 |
| BclI | TGATCA | 1 cut(s) | 976 |
| BcoDI | GTCTC | 3 cut(s) | 208, 1004, 1477 |
| BcuI | ACTAGT | 1 cut(s) | 1589 |
| BfaI | CTAG | 3 cut(s) | 1269, 1554, 1590 |
| BfmI | CTRYAG | 1 cut(s) | 789 |
| BfoI | RGCGCY | 1 cut(s) | 1036 |
| BfuAI | ACCTGC | 1 cut(s) | 998 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 891 |
| BisI | GCNGC | 3 cut(s) | 341, 780, 1383 |
| BlsI | GCNGC | 3 cut(s) | 342, 781, 1384 |
| Bme1390I | CCNGG | 4 cut(s) | 170, 274, 501, 1114 |
| Bme18I | GGWCC | 3 cut(s) | 172, 811, 1324 |
| BmgT120I | GGNCC | 5 cut(s) | 172, 811, 1307, 1324, 1346 |
| BmiI | GGNNCC | 7 cut(s) | 196, 394, 699, 730, 812, 1326, 1348 |
| BmrFI | CCNGG | 4 cut(s) | 170, 274, 501, 1114 |
| BmrI | ACTGGG | 1 cut(s) | 608 |
| BmsI | GCATC | 5 cut(s) | 427, 547, 1230, 1555, 1592 |
| BmuI | ACTGGG | 1 cut(s) | 608 |
| Bpu10I | CCTNAGC | 1 cut(s) | 413 |
| BsaAI | YACGTR | 2 cut(s) | 1054, 1354 |
| BsaBI | GATNNNNATC | 2 cut(s) | 975, 1248 |
| BsaHI | GRCGYC | 2 cut(s) | 243, 287 |
| BsaI | GGTCTC | 1 cut(s) | 1477 |
| BsaJI | CCNNGG | 6 cut(s) | 290, 693, 806, 1113, 1127, 1386 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 209, 239 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 34, 258, 782, 1128, 1674, 1685 |
| Bse1I | ACTGG | 3 cut(s) | 603, 1041, 1103 |
| Bse3DI | GCAATG | 1 cut(s) | 396 |
| Bse8I | GATNNNNATC | 2 cut(s) | 975, 1248 |
| BseBI | CCWGG | 4 cut(s) | 170, 274, 501, 1114 |
| BseDI | CCNNGG | 6 cut(s) | 290, 693, 806, 1113, 1127, 1386 |
| BseGI | GGATG | 5 cut(s) | 572, 647, 766, 1138, 1570 |
| BseJI | GATNNNNATC | 2 cut(s) | 975, 1248 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 34, 258, 782, 1128, 1674, 1685 |
| BseMI | GCAATG | 1 cut(s) | 396 |
| BseMII | CTCAG | 3 cut(s) | 404, 1488, 1735 |
| BseNI | ACTGG | 3 cut(s) | 603, 1041, 1103 |
| BseRI | GAGGAG | 4 cut(s) | 14, 17, 214, 1067 |
| BseXI | GCAGC | 2 cut(s) | 766, 1369 |
| BseYI | CCCAGC | 1 cut(s) | 782 |
| BsgI | GTGCAG | 3 cut(s) | 1093, 1580, 1677 |
| Bsh1236I | CGCG | 1 cut(s) | 122 |
| BshFI | GGCC | 6 cut(s) | 343, 840, 885, 1308, 1347, 1678 |
| BshNI | GGYRCC | 2 cut(s) | 392, 728 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BsiSI | CCGG | 2 cut(s) | 48, 259 |
| BslFI | GGGAC | 2 cut(s) | 824, 1055 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 34, 258, 782, 1128, 1674, 1685 |
| BsmAI | GTCTC | 3 cut(s) | 208, 1004, 1477 |
| BsmBI | CGTCTC | 1 cut(s) | 208 |
| BsmFI | GGGAC | 2 cut(s) | 824, 1055 |
| BsmI | GAATGC | 2 cut(s) | 577, 1142 |
| BsnI | GGCC | 6 cut(s) | 343, 840, 885, 1308, 1347, 1678 |
| Bso31I | GGTCTC | 1 cut(s) | 1477 |
| Bsp1286I | GDGCHC | 1 cut(s) | 24 |
| Bsp1407I | TGTACA | 1 cut(s) | 1285 |
| Bsp143I | GATC | 5 cut(s) | 976, 1099, 1336, 1443, 1609 |
| Bsp68I | TCGCGA | 1 cut(s) | 122 |
| BspACI | CCGC | 4 cut(s) | 183, 198, 340, 1436 |
| BspANI | GGCC | 6 cut(s) | 343, 840, 885, 1308, 1347, 1678 |
| BspCNI | CTCAG | 3 cut(s) | 405, 1487, 1734 |
| BspFNI | CGCG | 1 cut(s) | 122 |
| BspLI | GGNNCC | 7 cut(s) | 196, 394, 699, 730, 812, 1326, 1348 |
| BspMI | ACCTGC | 1 cut(s) | 998 |
| BspPI | GGATC | 2 cut(s) | 1094, 1438 |
| BspT107I | GGYRCC | 2 cut(s) | 392, 728 |
| BspTNI | GGTCTC | 1 cut(s) | 1477 |
| BsrDI | GCAATG | 1 cut(s) | 396 |
| BsrGI | TGTACA | 1 cut(s) | 1285 |
| BsrI | ACTGG | 3 cut(s) | 603, 1041, 1103 |
| BssECI | CCNNGG | 6 cut(s) | 290, 693, 806, 1113, 1127, 1386 |
| BssMI | GATC | 5 cut(s) | 976, 1099, 1336, 1443, 1609 |
| BssNI | GRCGYC | 2 cut(s) | 243, 287 |
| BssT1I | CCWWGG | 3 cut(s) | 693, 806, 1127 |
| Bst2UI | CCWGG | 4 cut(s) | 170, 274, 501, 1114 |
| Bst4CI | ACNGT | 2 cut(s) | 1015, 1314 |
| Bst6I | CTCTTC | 3 cut(s) | 113, 358, 1485 |
| BstACI | GRCGYC | 2 cut(s) | 243, 287 |
| BstAUI | TGTACA | 1 cut(s) | 1285 |
| BstBAI | YACGTR | 2 cut(s) | 1054, 1354 |
| BstC8I | GCNNGC | 2 cut(s) | 984, 1559 |
| BstDEI | CTNAG | 4 cut(s) | 413, 1474, 1606, 1721 |
| BstDSI | CCRYGG | 2 cut(s) | 290, 1386 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 32 |
| BstF5I | GGATG | 5 cut(s) | 572, 647, 766, 1138, 1570 |
| BstFNI | CGCG | 1 cut(s) | 122 |
| BstH2I | RGCGCY | 1 cut(s) | 1036 |
| BstHHI | GCGC | 2 cut(s) | 927, 1035 |
| BstKTI | GATC | 5 cut(s) | 979, 1102, 1339, 1446, 1612 |
| BstMAI | GTCTC | 3 cut(s) | 208, 1004, 1477 |
| BstMBI | GATC | 5 cut(s) | 976, 1099, 1336, 1443, 1609 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 119, 785, 891, 1717 |
| BstNI | CCWGG | 4 cut(s) | 170, 274, 501, 1114 |
| BstNSI | RCATGY | 2 cut(s) | 986, 1286 |
| BstSCI | CCNGG | 4 cut(s) | 168, 272, 499, 1112 |
| BstSFI | CTRYAG | 1 cut(s) | 789 |
| BstSNI | TACGTA | 1 cut(s) | 1354 |
| BstUI | CGCG | 1 cut(s) | 122 |
| BstV1I | GCAGC | 2 cut(s) | 766, 1369 |
| BstX2I | RGATCY | 1 cut(s) | 1443 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 280, 403, 739 |
| BstYI | RGATCY | 1 cut(s) | 1443 |
| BsuRI | GGCC | 6 cut(s) | 343, 840, 885, 1308, 1347, 1678 |
| BtgI | CCRYGG | 2 cut(s) | 290, 1386 |
| BtgZI | GCGATG | 2 cut(s) | 1418, 1648 |
| BtsCI | GGATG | 5 cut(s) | 572, 647, 766, 1138, 1570 |
| BtsIMutI | CAGTG | 2 cut(s) | 1048, 1093 |
| BtuMI | TCGCGA | 1 cut(s) | 122 |
| BveI | ACCTGC | 1 cut(s) | 998 |
| Cac8I | GCNNGC | 2 cut(s) | 984, 1559 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1035 |
| CfoI | GCGC | 2 cut(s) | 927, 1035 |
| Cfr13I | GGNCC | 5 cut(s) | 172, 811, 1307, 1324, 1346 |
| CseI | GACGC | 1 cut(s) | 295 |
| Csp6I | GTAC | 4 cut(s) | 1038, 1232, 1286, 1427 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 976, 1011, 1613, 1648 |
| CviAII | CATG | 4 cut(s) | 683, 983, 1178, 1283 |
| CviQI | GTAC | 4 cut(s) | 1038, 1232, 1286, 1427 |
| DdeI | CTNAG | 4 cut(s) | 413, 1474, 1606, 1721 |
| DpnI | GATC | 5 cut(s) | 978, 1101, 1338, 1445, 1611 |
| DpnII | GATC | 5 cut(s) | 976, 1099, 1336, 1443, 1609 |
| EaeI | YGGCCR | 1 cut(s) | 1676 |
| Eam1104I | CTCTTC | 3 cut(s) | 113, 358, 1485 |
| EarI | CTCTTC | 3 cut(s) | 113, 358, 1485 |
| EciI | GGCGGA | 1 cut(s) | 187 |
| Ecl136II | GAGCTC | 1 cut(s) | 22 |
| Eco105I | TACGTA | 1 cut(s) | 1354 |
| Eco130I | CCWWGG | 3 cut(s) | 693, 806, 1127 |
| Eco24I | GRGCYC | 1 cut(s) | 24 |
| Eco31I | GGTCTC | 1 cut(s) | 1477 |
| Eco47I | GGWCC | 3 cut(s) | 172, 811, 1324 |
| Eco53kI | GAGCTC | 1 cut(s) | 22 |
| Eco57I | CTGAAG | 2 cut(s) | 172, 1314 |
| EcoICRI | GAGCTC | 1 cut(s) | 22 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 32 |
| EcoO109I | RGGNCCY | 3 cut(s) | 172, 811, 1346 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoRII | CCWGG | 4 cut(s) | 168, 272, 499, 1112 |
| EcoT14I | CCWWGG | 3 cut(s) | 693, 806, 1127 |
| EcoT22I | ATGCAT | 1 cut(s) | 1284 |
| EcoT38I | GRGCYC | 1 cut(s) | 24 |
| ErhI | CCWWGG | 3 cut(s) | 693, 806, 1127 |
| Esp3I | CGTCTC | 1 cut(s) | 208 |
| FaeI | CATG | 4 cut(s) | 686, 986, 1181, 1286 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1413, 1445 |
| FaqI | GGGAC | 2 cut(s) | 824, 1055 |
| FatI | CATG | 4 cut(s) | 682, 982, 1177, 1282 |
| FbaI | TGATCA | 1 cut(s) | 976 |
| Fnu4HI | GCNGC | 3 cut(s) | 341, 780, 1383 |
| FokI | GGATG | 5 cut(s) | 579, 654, 773, 1145, 1577 |
| FriOI | GRGCYC | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 3 cut(s) | 341, 780, 1383 |
| FspBI | CTAG | 3 cut(s) | 1269, 1554, 1590 |
| GlaI | GCGC | 2 cut(s) | 926, 1034 |
| GluI | GCNGC | 3 cut(s) | 341, 780, 1383 |
| GsaI | CCCAGC | 1 cut(s) | 786 |
| HaeII | RGCGCY | 1 cut(s) | 1036 |
| HaeIII | GGCC | 6 cut(s) | 343, 840, 885, 1308, 1347, 1678 |
| HapII | CCGG | 2 cut(s) | 48, 259 |
| HgaI | GACGC | 1 cut(s) | 295 |
| HhaI | GCGC | 2 cut(s) | 927, 1035 |
| Hin1I | GRCGYC | 2 cut(s) | 243, 287 |
| Hin1II | CATG | 4 cut(s) | 686, 986, 1181, 1286 |
| Hin6I | GCGC | 2 cut(s) | 925, 1033 |
| HinP1I | GCGC | 2 cut(s) | 925, 1033 |
| HincII | GTYRAC | 1 cut(s) | 670 |
| HindII | GTYRAC | 1 cut(s) | 670 |
| HinfI | GANTC | 9 cut(s) | 38, 262, 316, 496, 515, 521, 772, 1498, 1508 |
| HpaI | GTTAAC | 1 cut(s) | 670 |
| HpaII | CCGG | 2 cut(s) | 48, 259 |
| HphI | GGTGA | 4 cut(s) | 172, 505, 836, 1309 |
| Hpy166II | GTNNAC | 3 cut(s) | 670, 1018, 1357 |
| Hpy188I | TCNGA | 7 cut(s) | 191, 385, 424, 520, 622, 1543, 1724 |
| Hpy188III | TCNNGA | 9 cut(s) | 35, 121, 298, 313, 968, 1476, 1577, 1620, 1737 |
| Hpy8I | GTNNAC | 3 cut(s) | 670, 1018, 1357 |
| Hpy99I | CGWCG | 3 cut(s) | 248, 289, 329 |
| HpyAV | CCTTC | 6 cut(s) | 196, 223, 896, 935, 1196, 1338 |
| HpyCH4III | ACNGT | 2 cut(s) | 1015, 1314 |
| HpyCH4IV | ACGT | 4 cut(s) | 243, 1053, 1353, 1359 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 119, 785, 891, 1717 |
| HpyF3I | CTNAG | 4 cut(s) | 413, 1474, 1606, 1721 |
| HpySE526I | ACGT | 4 cut(s) | 243, 1053, 1353, 1359 |
| Hsp92I | GRCGYC | 2 cut(s) | 243, 287 |
| Hsp92II | CATG | 4 cut(s) | 686, 986, 1181, 1286 |
| HspAI | GCGC | 2 cut(s) | 925, 1033 |
| Ksp22I | TGATCA | 1 cut(s) | 976 |
| KspAI | GTTAAC | 1 cut(s) | 670 |
| Kzo9I | GATC | 5 cut(s) | 976, 1099, 1336, 1443, 1609 |
| LmnI | GCTCC | 5 cut(s) | 19, 27, 200, 703, 965 |
| Lsp1109I | GCAGC | 2 cut(s) | 766, 1369 |
| LweI | GCATC | 5 cut(s) | 427, 547, 1230, 1555, 1592 |
| MaeI | CTAG | 3 cut(s) | 1269, 1554, 1590 |
| MaeII | ACGT | 4 cut(s) | 243, 1053, 1353, 1359 |
| MaeIII | GTNAC | 4 cut(s) | 613, 954, 1549, 1582 |
| MalI | GATC | 5 cut(s) | 978, 1101, 1338, 1445, 1611 |
| MboI | GATC | 5 cut(s) | 976, 1099, 1336, 1443, 1609 |
| MfeI | CAATTG | 2 cut(s) | 879, 902 |
| MflI | RGATCY | 1 cut(s) | 1443 |
| MhlI | GDGCHC | 1 cut(s) | 24 |
| MlsI | TGGCCA | 1 cut(s) | 1678 |
| MluCI | AATT | 9 cut(s) | 155, 369, 879, 902, 934, 1004, 1257, 1701, 1726 |
| MluNI | TGGCCA | 1 cut(s) | 1678 |
| MlyI | GAGTC | 2 cut(s) | 310, 766 |
| MmeI | TCCRAC | 1 cut(s) | 694 |
| Mox20I | TGGCCA | 1 cut(s) | 1678 |
| Mph1103I | ATGCAT | 1 cut(s) | 1284 |
| MroXI | GAANNNNTTC | 2 cut(s) | 372, 1122 |
| MscI | TGGCCA | 1 cut(s) | 1678 |
| MseI | TTAA | 6 cut(s) | 209, 506, 669, 1208, 1254, 1698 |
| Msp20I | TGGCCA | 1 cut(s) | 1678 |
| MspI | CCGG | 2 cut(s) | 48, 259 |
| MspR9I | CCNGG | 4 cut(s) | 170, 274, 501, 1114 |
| MunI | CAATTG | 2 cut(s) | 879, 902 |
| Mva1269I | GAATGC | 2 cut(s) | 577, 1142 |
| MvaI | CCWGG | 4 cut(s) | 170, 274, 501, 1114 |
| MvnI | CGCG | 1 cut(s) | 122 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 119, 785, 891, 1717 |
| NdeII | GATC | 5 cut(s) | 976, 1099, 1336, 1443, 1609 |
| NlaIII | CATG | 4 cut(s) | 686, 986, 1181, 1286 |
| NlaIV | GGNNCC | 7 cut(s) | 196, 394, 699, 730, 812, 1326, 1348 |
| NmuCI | GTSAC | 1 cut(s) | 954 |
| NruI | TCGCGA | 1 cut(s) | 122 |
| NsiI | ATGCAT | 1 cut(s) | 1284 |
| NspI | RCATGY | 2 cut(s) | 986, 1286 |
| PaeI | GCATGC | 1 cut(s) | 986 |
| PaqCI | CACCTGC | 1 cut(s) | 998 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 964 |
| PctI | GAATGC | 2 cut(s) | 577, 1142 |
| PdmI | GAANNNNTTC | 2 cut(s) | 372, 1122 |
| PfeI | GAWTC | 7 cut(s) | 38, 262, 496, 515, 521, 1498, 1508 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1128, 1674, 1685 |
| PfoI | TCCNGGA | 2 cut(s) | 168, 499 |
| PkrI | GCNGC | 3 cut(s) | 342, 781, 1384 |
| PleI | GAGTC | 2 cut(s) | 310, 766 |
| PpsI | GAGTC | 2 cut(s) | 310, 766 |
| Ppu21I | YACGTR | 2 cut(s) | 1054, 1354 |
| PpuMI | RGGWCCY | 2 cut(s) | 172, 811 |
| PsiI | TTATAA | 1 cut(s) | 633 |
| Psp124BI | GAGCTC | 1 cut(s) | 24 |
| Psp1406I | AACGTT | 1 cut(s) | 1359 |
| Psp5II | RGGWCCY | 2 cut(s) | 172, 811 |
| Psp6I | CCWGG | 4 cut(s) | 168, 272, 499, 1112 |
| PspFI | CCCAGC | 1 cut(s) | 782 |
| PspGI | CCWGG | 4 cut(s) | 168, 272, 499, 1112 |
| PspN4I | GGNNCC | 7 cut(s) | 196, 394, 699, 730, 812, 1326, 1348 |
| PspPI | GGNCC | 5 cut(s) | 172, 811, 1307, 1324, 1346 |
| PspPPI | RGGWCCY | 2 cut(s) | 172, 811 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1035 |
| PsuI | RGATCY | 1 cut(s) | 1443 |
| RruI | TCGCGA | 1 cut(s) | 122 |
| RsaI | GTAC | 4 cut(s) | 1039, 1233, 1287, 1428 |
| RsaNI | GTAC | 4 cut(s) | 1038, 1232, 1286, 1427 |
| SacI | GAGCTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 6 cut(s) | 209, 506, 669, 1208, 1254, 1698 |
| SatI | GCNGC | 3 cut(s) | 341, 780, 1383 |
| Sau3AI | GATC | 5 cut(s) | 976, 1099, 1336, 1443, 1609 |
| Sau96I | GGNCC | 5 cut(s) | 172, 811, 1307, 1324, 1346 |
| SchI | GAGTC | 2 cut(s) | 310, 766 |
| ScrFI | CCNGG | 4 cut(s) | 170, 274, 501, 1114 |
| SduI | GDGCHC | 1 cut(s) | 24 |
| SfaNI | GCATC | 5 cut(s) | 427, 547, 1230, 1555, 1592 |
| SfcI | CTRYAG | 1 cut(s) | 789 |
| SinI | GGWCC | 3 cut(s) | 172, 811, 1324 |
| SnaBI | TACGTA | 1 cut(s) | 1354 |
| SpeI | ACTAGT | 1 cut(s) | 1589 |
| SphI | GCATGC | 1 cut(s) | 986 |
| Sse9I | AATT | 9 cut(s) | 155, 369, 879, 902, 934, 1004, 1257, 1701, 1726 |
| SsiI | CCGC | 4 cut(s) | 183, 198, 340, 1436 |
| SspI | AATATT | 1 cut(s) | 1156 |
| SspMI | CTAG | 3 cut(s) | 1269, 1554, 1590 |
| SstI | GAGCTC | 1 cut(s) | 24 |
| StyD4I | CCNGG | 4 cut(s) | 168, 272, 499, 1112 |
| StyI | CCWWGG | 3 cut(s) | 693, 806, 1127 |
| TaaI | ACNGT | 2 cut(s) | 1015, 1314 |
| TaiI | ACGT | 4 cut(s) | 246, 1056, 1356, 1362 |
| TaqI | TCGA | 3 cut(s) | 299, 1242, 1578 |
| TasI | AATT | 9 cut(s) | 155, 369, 879, 902, 934, 1004, 1257, 1701, 1726 |
| TatI | WGTACW | 2 cut(s) | 1285, 1426 |
| TauI | GCSGC | 1 cut(s) | 343 |
| TfiI | GAWTC | 7 cut(s) | 38, 262, 496, 515, 521, 1498, 1508 |
| Tru1I | TTAA | 6 cut(s) | 209, 506, 669, 1208, 1254, 1698 |
| Tru9I | TTAA | 6 cut(s) | 209, 506, 669, 1208, 1254, 1698 |
| TscAI | CASTG | 2 cut(s) | 1048, 1093 |
| TseFI | GTSAC | 1 cut(s) | 954 |
| TseI | GCWGC | 2 cut(s) | 779, 1382 |
| Tsp45I | GTSAC | 1 cut(s) | 954 |
| TspDTI | ATGAA | 6 cut(s) | 365, 699, 1149, 1260, 1410, 1503 |
| TspGWI | ACGGA | 3 cut(s) | 20, 579, 673 |
| TspRI | CASTG | 2 cut(s) | 1048, 1093 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1128, 1674, 1685 |
| VpaK11BI | GGWCC | 3 cut(s) | 172, 811, 1324 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 32 |
| XapI | RAATTY | 5 cut(s) | 155, 369, 1004, 1257, 1726 |
| XceI | RCATGY | 2 cut(s) | 986, 1286 |
| XmnI | GAANNNNTTC | 2 cut(s) | 372, 1122 |
| XspI | CTAG | 3 cut(s) | 1269, 1554, 1590 |
| ZraI | GACGTC | 1 cut(s) | 244 |
| Zsp2I | ATGCAT | 1 cut(s) | 1284 |