RchiOBHm_Chr6g0272241

Embryogenesis-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004956
Physical Location & Seq
Reverse (-)
32433887 .. 32435262
1376 bp
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UTR
Exon/CDS
Intron
PRQ24423

Sequence Viewer

Length: 483 bp
ATGCAGGTGGAGGCAAACTTAAATATTGTATTGGCTACCACAAAGCGTGGAGGACACTTAGCTTTCTTTGAAGGATTAACTGCTACCGGCATTTGGTGGGTAAGGGCTGTGGACGAATTCTTAAAAGTTTTACATTGTAGCCAACATATGCATGTAAAGAAGGTGGCAAGTTCTTACCCACCATTAATAATTGAACCAGGAGAAGGTAAAATTTCAGCAGAGCGAGATCAACAGAGGTCACAGCCAAAGTCAGATTCTTTGGCTAATGTCGTACAATCTTCTGAACAAGCTACTATGCCTCTTGATGTAATTGCTCATGCTAGAAGATGCTTAGATCTGCTATCTCGACAGAGTAGGTGGCCATTGTGGTTGCTTGTTTATACTGCTATTATGACAAGCTGGCCGATGGTAGGTTCTGTTCTCAAGATTGCATTACAAAAGAAGCTCAGAAATGTCTTACCTGACGCTTTCCTCAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

9.59

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 359, 401
AcsI RAATTY 2 cut(s) 116, 210
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 3 cut(s) 93, 203, 410
AgsI TTSAA 2 cut(s) 71, 194
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
AluBI AGCT 4 cut(s) 62, 290, 399, 445
AluI AGCT 4 cut(s) 62, 290, 399, 445
AoxI GGCC 2 cut(s) 359, 401
ApoI RAATTY 2 cut(s) 116, 210
AseI ATTAAT 1 cut(s) 185
BalI TGGCCA 1 cut(s) 361
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 198
BfaI CTAG 1 cut(s) 321
BglII AGATCT 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 407
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 203, 410
Bse118I RCCGGY 1 cut(s) 86
BseBI CCWGG 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 93, 203, 410
BseMII CTCAG 1 cut(s) 460
BshFI GGCC 2 cut(s) 361, 403
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 3 cut(s) 93, 203, 410
BsnI GGCC 2 cut(s) 361, 403
Bsp143I GATC 2 cut(s) 226, 334
BspANI GGCC 2 cut(s) 361, 403
BspCNI CTCAG 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 2 cut(s) 226, 334
Bst2UI CCWGG 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 3 cut(s) 58, 331, 446
BstKTI GATC 2 cut(s) 229, 337
BstMBI GATC 2 cut(s) 226, 334
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 2 cut(s) 361, 403
Cac8I GCNNGC 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 86
CseI GACGC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 272
CviAII CATG 3 cut(s) 152, 317, 480
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 3 cut(s) 58, 331, 446
DpnI GATC 2 cut(s) 228, 336
DpnII GATC 2 cut(s) 226, 334
EaeI YGGCCR 2 cut(s) 359, 401
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 153
FaeI CATG 3 cut(s) 155, 320, 483
FaiI YATR 8 cut(s) 147, 149, 153, 296, 318, 381, 392, 481
FatI CATG 3 cut(s) 151, 316, 479
FauNDI CATATG 1 cut(s) 147
FspBI CTAG 1 cut(s) 321
HaeIII GGCC 2 cut(s) 361, 403
HapII CCGG 1 cut(s) 87
HgaI GACGC 1 cut(s) 473
Hin1II CATG 3 cut(s) 155, 320, 483
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 253, 283, 449
Hpy188III TCNNGA 3 cut(s) 302, 345, 424
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 65, 154, 197
HpyCH4V TGCA 3 cut(s) 4, 151, 431
HpyF3I CTNAG 3 cut(s) 58, 331, 446
Hsp92II CATG 3 cut(s) 155, 320, 483
Kzo9I GATC 2 cut(s) 226, 334
LpnPI CCDG 5 cut(s) 100, 183, 210, 385, 474
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 237
MalI GATC 2 cut(s) 228, 336
MboI GATC 2 cut(s) 226, 334
MboII GAAGA 2 cut(s) 270, 336
MflI RGATCY 1 cut(s) 334
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 4 cut(s) 116, 189, 210, 309
MluNI TGGCCA 1 cut(s) 361
MnlI CCTC 5 cut(s) 4, 44, 228, 309, 482
Mox20I TGGCCA 1 cut(s) 361
Mph1103I ATGCAT 1 cut(s) 153
MscI TGGCCA 1 cut(s) 361
MseI TTAA 4 cut(s) 20, 77, 122, 185
MslI CAYNNNNRTG 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 361
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 147
NdeII GATC 2 cut(s) 226, 334
NlaIII CATG 3 cut(s) 155, 320, 483
NmuCI GTSAC 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 153
NspI RCATGY 1 cut(s) 155
PfeI GAWTC 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PsrI GAACNNNNNNTAC 2 cut(s) 402, 434
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 4 cut(s) 20, 77, 122, 185
Sau3AI GATC 2 cut(s) 226, 334
ScrFI CCNGG 1 cut(s) 198
SfaNI GCATC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 4 cut(s) 116, 189, 210, 309
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 346
TasI AATT 4 cut(s) 116, 189, 210, 309
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 4 cut(s) 20, 77, 122, 185
Tru9I TTAA 4 cut(s) 20, 77, 122, 185
TseFI GTSAC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 237
VspI ATTAAT 1 cut(s) 185
XapI RAATTY 2 cut(s) 116, 210
XceI RCATGY 1 cut(s) 155
XspI CTAG 1 cut(s) 321
Zsp2I ATGCAT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.