Rh6AG183900

Embryogenesis-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
32260988 .. 32297494
36507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG183900.1

Sequence Viewer

Length: 1593 bp
ATGCATTGGAAGGTGGATTGGTGGGGTCTATGTGCAACTTTAGCGAGCAGCAGCCCTTACCTTGTTTTGCTGAACGATCTCCTTCTCATTCCTATTTGGCACTACATCTTGGCCTTCCTCACAATCTCCTTCGCATTCCTCTACTATTTCCTTGAATTCCATTTCCTCCATGACCTTTTCACCGGATTCAGAGGCTGCCCTGTCACCTTGACCTACCACTCCTCCTCCCATATCTACCATGACGTCGTTTCCAAGTGTCGGATTCTCCATTCCAGGTATTTGGTCACGCCCTGGCTCTCAAGCCCTCATGTACAGACCGCCTTCCTCAGTATCTTTGGTCGACCTCCACTTTTCAACTACCGGAGACAACTTTTTCATTTATCTGATGGTGGAACTATTGCCTTGGATTGGTTACTGAACTCTGATGTTCTGGGAAATAACTTTGACATAACAACTGCTATTCCGAAAGATGATATAAACCCGATTGTGCTAGCCATTCCTGGATTGACAAGCGACTCCGAATCTCCTAGTATAAAGCATCTTGCTTTTAACACGGCGCAAAAGGGATGGAACGTTGTTGTTACCAACCACAGAGGTTTGGGAGGTGTTCCAATTACTTCCGATTGCTTTTATCATGCTGGTTGGACAGAGGATCTGCGGGCAGTCATTAATCATCTCCATCATGAATACCCCAACGCTCCTTTATTTGTTGTTGGAATGAGTATGGGAGCCAACATTTTGGTGAAATATCTTGGGGAGGATGGAGATAGTATTCCAGTTGCCGGAGCTGTAGCAATATGTTCTCCTTGGGACCTTCTGATTAGTGATAGATTTTTACGCCGTAGGCTGTTGCAAAAAATTTATGACAGAGTTCTTGCAATTGGCCTTCAAGGCTATGTACAATTGCACAGGCCTATGTTTTCTCGGCTGGCTAATTGGGAAGGTATAGAAAAGTCTCGTTGTATTCGTGATTTTGATCATCATGCTACTCGCCTTGTTGGGAAATTTGAGACTGTGGACACATATTACAGGCATTGTAGCAGTGCTAGTTATGTAGGAAATGTGTCAGTGCCACTACTCTGTATCAGTGCATTAGATGATCCACTTTGTACCAGGGAAGCCATTCCTTGGGATGAATGCAGGGCAAACTCAAATATTGTATTGGCTACCACAAAGCGTGGAGGACACTTAGCTTTCTTTGAAGGATTAACTGCTACTGGCATTTGGTGGGTAAGGGCTGTGGACGAATTTTTAAGAGTTTTACATTGTAGCCAACATATGCATGTAAAGAAGGTGGCAAGTTCTTACCCACCATTAATAATTGAACCAATAGAAGGTAAAATTTCAGCAGAGAGAGATCAACAGAGGCCACAGCCAGAGTCAGATTCTTTGGCTAATGTCGTACAATCTTCTGAACAAGCTACTACGCCTCTTGATGCGACTCTGTTCCTGGAGAGCGAATATGTTGGCCTTCATGAATTCCAACATTATTACGGTTTCTTGCTAGCGGGTACAGATGTCCTAGTTGTTGGCTCCGTGAGGTCTAGAGCTCCTAACCCTTCATTTCCCATGGTCGAATTATCACCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

530

Amino Acids

59.7

Weight (kDa)

6.21

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 161 - 276 6.6e-10 alpha/beta hydrolase fold
Hydrolase_4 PF12146 162 - 272 2.3e-12 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 1128
AccI GTMKAC 1 cut(s) 340
AciI CCGC 3 cut(s) 318, 658, 1508
AclI AACGTT 1 cut(s) 573
AclWI GGATC 2 cut(s) 660, 1094
AcsI RAATTY 6 cut(s) 155, 858, 1004, 1247, 1341, 1478
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 5 cut(s) 312, 900, 1111, 1404, 1513
AfiI CCNNNNNNNGG 5 cut(s) 258, 408, 782, 1128, 1334
AgsI TTSAA 5 cut(s) 155, 355, 890, 1202, 1325
AjnI CCWGG 5 cut(s) 272, 290, 499, 1112, 1449
AluBI AGCT 4 cut(s) 788, 1193, 1421, 1550
AluI AGCT 4 cut(s) 788, 1193, 1421, 1550
Alw21I GWGCWC 1 cut(s) 1552
Alw26I GTCTC 3 cut(s) 358, 960, 1004
AlwI GGATC 2 cut(s) 660, 1094
AlwNI CAGNNNCTG 1 cut(s) 195
AoxI GGCC 5 cut(s) 111, 883, 911, 1367, 1468
ApeKI GCWGC 3 cut(s) 48, 51, 195
ApoI RAATTY 6 cut(s) 155, 858, 1004, 1247, 1341, 1478
AseI ATTAAT 2 cut(s) 669, 1316
Asp700I GAANNNNTTC 1 cut(s) 1122
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 1 cut(s) 811
AsuHPI GGTGA 4 cut(s) 172, 196, 754, 1575
AsuNHI GCTAGC 2 cut(s) 490, 1504
AvaII GGWCC 1 cut(s) 811
BaeI ACNNNNGTAYC 2 cut(s) 1503, 1536
BanII GRGCYC 1 cut(s) 1552
Bbv12I GWGCWC 1 cut(s) 1552
BbvI GCAGC 3 cut(s) 60, 63, 182
BccI CCATC 4 cut(s) 380, 561, 687, 755
BceAI ACGGC 2 cut(s) 570, 825
BciT130I CCWGG 5 cut(s) 274, 292, 501, 1114, 1451
BclI TGATCA 1 cut(s) 976
BcoDI GTCTC 3 cut(s) 358, 960, 1004
BfaI CTAG 6 cut(s) 491, 528, 1047, 1505, 1523, 1545
BfmI CTRYAG 1 cut(s) 789
BglI GCCNNNNNGGC 1 cut(s) 891
BisI GCNGC 3 cut(s) 49, 52, 196
BlsI GCNGC 3 cut(s) 50, 53, 197
Bme1390I CCNGG 5 cut(s) 274, 292, 501, 1114, 1451
Bme18I GGWCC 1 cut(s) 811
BmgT120I GGNCC 1 cut(s) 811
BmiI GGNNCC 3 cut(s) 730, 812, 1534
BmrFI CCNGG 5 cut(s) 274, 292, 501, 1114, 1451
BmsI GCATC 2 cut(s) 547, 1426
BmtI GCTAGC 2 cut(s) 494, 1508
BpmI CTGGAG 1 cut(s) 1472
BpuEI CTTGAG 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 6 cut(s) 290, 402, 806, 1113, 1127, 1569
BsaWI WCCGGW 2 cut(s) 182, 360
BsaXI ACNNNNNCTCC 4 cut(s) 206, 209, 236, 239
Bsc4I CCNNNNNNNGG 5 cut(s) 258, 408, 782, 1128, 1334
Bse1I ACTGG 2 cut(s) 776, 1222
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 5 cut(s) 274, 292, 501, 1114, 1451
BseDI CCNNGG 6 cut(s) 290, 402, 806, 1113, 1127, 1569
BseGI GGATG 3 cut(s) 572, 766, 1138
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 5 cut(s) 258, 408, 782, 1128, 1334
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 2 cut(s) 776, 1222
BseRI GAGGAG 2 cut(s) 211, 214
BseXI GCAGC 3 cut(s) 60, 63, 182
BshFI GGCC 5 cut(s) 113, 885, 913, 1369, 1470
BsiHKAI GWGCWC 1 cut(s) 1552
BsiSI CCGG 3 cut(s) 183, 361, 783
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 5 cut(s) 258, 408, 782, 1128, 1334
BsmAI GTCTC 3 cut(s) 358, 960, 1004
BsmFI GGGAC 1 cut(s) 824
BsmI GAATGC 2 cut(s) 134, 1142
BsnI GGCC 5 cut(s) 113, 885, 913, 1369, 1470
Bsp1286I GDGCHC 1 cut(s) 1552
Bsp1407I TGTACA 2 cut(s) 310, 898
Bsp143I GATC 5 cut(s) 76, 652, 976, 1099, 1357
Bsp19I CCATGG 1 cut(s) 1569
BspACI CCGC 3 cut(s) 318, 658, 1508
BspANI GGCC 5 cut(s) 113, 885, 913, 1369, 1470
BspCNI CTCAG 1 cut(s) 339
BspHI TCATGA 2 cut(s) 682, 1474
BspLI GGNNCC 3 cut(s) 730, 812, 1534
BspOI GCTAGC 2 cut(s) 494, 1508
BspPI GGATC 2 cut(s) 660, 1094
BsrGI TGTACA 2 cut(s) 310, 898
BsrI ACTGG 2 cut(s) 776, 1222
BssECI CCNNGG 6 cut(s) 290, 402, 806, 1113, 1127, 1569
BssMI GATC 5 cut(s) 76, 652, 976, 1099, 1357
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 4 cut(s) 402, 806, 1127, 1569
Bst2UI CCWGG 5 cut(s) 274, 292, 501, 1114, 1451
Bst4CI ACNGT 2 cut(s) 1015, 1496
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 2 cut(s) 310, 898
BstC8I GCNNGC 5 cut(s) 46, 492, 660, 930, 1506
BstDEI CTNAG 2 cut(s) 326, 1189
BstDSI CCRYGG 1 cut(s) 1569
BstF5I GGATG 3 cut(s) 572, 766, 1138
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 5 cut(s) 79, 655, 979, 1102, 1360
BstMAI GTCTC 3 cut(s) 358, 960, 1004
BstMBI GATC 5 cut(s) 76, 652, 976, 1099, 1357
BstMWI GCNNNNNNNGC 2 cut(s) 41, 891
BstNI CCWGG 5 cut(s) 274, 292, 501, 1114, 1451
BstNSI RCATGY 1 cut(s) 1286
BstSCI CCNGG 5 cut(s) 272, 290, 499, 1112, 1449
BstSFI CTRYAG 1 cut(s) 789
BstV1I GCAGC 3 cut(s) 60, 63, 182
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 2 cut(s) 280, 739
BstYI RGATCY 1 cut(s) 652
BsuRI GGCC 5 cut(s) 113, 885, 913, 1369, 1470
BtgI CCRYGG 1 cut(s) 1569
BtsCI GGATG 3 cut(s) 572, 766, 1138
BtsI GCAGTG 1 cut(s) 1048
BtsIMutI CAGTG 3 cut(s) 1048, 1074, 1093
Cac8I GCNNGC 5 cut(s) 46, 492, 660, 930, 1506
CaiI CAGNNNCTG 1 cut(s) 195
CciI TCATGA 2 cut(s) 682, 1474
CfoI GCGC 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 811
Csp6I GTAC 5 cut(s) 311, 899, 1110, 1403, 1512
CviAII CATG 9 cut(s) 170, 239, 308, 635, 683, 983, 1283, 1475, 1570
CviQI GTAC 5 cut(s) 311, 899, 1110, 1403, 1512
DdeI CTNAG 2 cut(s) 326, 1189
DpnI GATC 5 cut(s) 78, 654, 978, 1101, 1359
DpnII GATC 5 cut(s) 76, 652, 976, 1099, 1357
Ecl136II GAGCTC 1 cut(s) 1550
Eco130I CCWWGG 4 cut(s) 402, 806, 1127, 1569
Eco147I AGGCCT 1 cut(s) 913
Eco24I GRGCYC 1 cut(s) 1552
Eco47I GGWCC 1 cut(s) 811
Eco53kI GAGCTC 1 cut(s) 1550
EcoICRI GAGCTC 1 cut(s) 1550
EcoO109I RGGNCCY 1 cut(s) 811
EcoRI GAATTC 2 cut(s) 155, 1478
EcoRII CCWGG 5 cut(s) 272, 290, 499, 1112, 1449
EcoT14I CCWWGG 4 cut(s) 402, 806, 1127, 1569
EcoT22I ATGCAT 2 cut(s) 6, 1284
EcoT38I GRGCYC 1 cut(s) 1552
ErhI CCWWGG 4 cut(s) 402, 806, 1127, 1569
FaeI CATG 9 cut(s) 173, 242, 311, 638, 686, 986, 1286, 1478, 1573
FaqI GGGAC 1 cut(s) 824
FatI CATG 9 cut(s) 169, 238, 307, 634, 682, 982, 1282, 1474, 1569
FauI CCCGC 2 cut(s) 651, 1501
FauNDI CATATG 1 cut(s) 1278
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 49, 52, 196
FokI GGATG 3 cut(s) 579, 773, 1145
FriOI GRGCYC 1 cut(s) 1552
Fsp4HI GCNGC 3 cut(s) 49, 52, 196
FspBI CTAG 6 cut(s) 491, 528, 1047, 1505, 1523, 1545
GlaI GCGC 1 cut(s) 558
GluI GCNGC 3 cut(s) 49, 52, 196
GsuI CTGGAG 1 cut(s) 1472
HaeIII GGCC 5 cut(s) 113, 885, 913, 1369, 1470
HapII CCGG 3 cut(s) 183, 361, 783
HhaI GCGC 1 cut(s) 559
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 9 cut(s) 173, 242, 311, 638, 686, 986, 1286, 1478, 1573
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 7 cut(s) 186, 262, 515, 521, 1379, 1385, 1441
HpaII CCGG 3 cut(s) 183, 361, 783
HphI GGTGA 4 cut(s) 172, 196, 754, 1575
Hpy166II GTNNAC 3 cut(s) 341, 1018, 1243
Hpy188III TCNNGA 5 cut(s) 683, 968, 1433, 1475, 1545
Hpy8I GTNNAC 3 cut(s) 341, 1018, 1243
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 2 cut(s) 1015, 1496
HpyCH4IV ACGT 2 cut(s) 243, 573
HpyCH4V TGCA 8 cut(s) 4, 35, 853, 878, 907, 1091, 1140, 1282
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 891
HpyF3I CTNAG 2 cut(s) 326, 1189
HpySE526I ACGT 2 cut(s) 243, 573
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 9 cut(s) 173, 242, 311, 638, 686, 986, 1286, 1478, 1573
HspAI GCGC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 5 cut(s) 76, 652, 976, 1099, 1357
LmnI GCTCC 5 cut(s) 703, 728, 785, 1538, 1555
Lsp1109I GCAGC 3 cut(s) 60, 63, 182
LweI GCATC 2 cut(s) 547, 1426
MaeI CTAG 6 cut(s) 491, 528, 1047, 1505, 1523, 1545
MaeII ACGT 2 cut(s) 243, 573
MaeIII GTNAC 4 cut(s) 202, 283, 411, 580
MalI GATC 5 cut(s) 78, 654, 978, 1101, 1359
MboI GATC 5 cut(s) 76, 652, 976, 1099, 1357
MboII GAAGA 1 cut(s) 1401
MfeI CAATTG 2 cut(s) 879, 902
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 1552
MlyI GAGTC 3 cut(s) 509, 1388, 1435
MmeI TCCRAC 4 cut(s) 239, 623, 694, 1507
Mph1103I ATGCAT 2 cut(s) 6, 1284
MroXI GAANNNNTTC 1 cut(s) 1122
MseI TTAA 5 cut(s) 549, 669, 1208, 1253, 1316
MslI CAYNNNNRTG 2 cut(s) 740, 1281
MspI CCGG 3 cut(s) 183, 361, 783
MspR9I CCNGG 5 cut(s) 274, 292, 501, 1114, 1451
MunI CAATTG 2 cut(s) 879, 902
Mva1269I GAATGC 2 cut(s) 134, 1142
MvaI CCWGG 5 cut(s) 274, 292, 501, 1114, 1451
MwoI GCNNNNNNNGC 2 cut(s) 41, 891
NcoI CCATGG 1 cut(s) 1569
NdeI CATATG 1 cut(s) 1278
NdeII GATC 5 cut(s) 76, 652, 976, 1099, 1357
NheI GCTAGC 2 cut(s) 490, 1504
NlaIII CATG 9 cut(s) 173, 242, 311, 638, 686, 986, 1286, 1478, 1573
NlaIV GGNNCC 3 cut(s) 730, 812, 1534
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 2 cut(s) 202, 283
NsiI ATGCAT 2 cut(s) 6, 1284
NspI RCATGY 1 cut(s) 1286
PagI TCATGA 2 cut(s) 682, 1474
PceI AGGCCT 1 cut(s) 913
PcsI WCGNNNNNNNCGW 1 cut(s) 964
PctI GAATGC 2 cut(s) 134, 1142
PdmI GAANNNNTTC 1 cut(s) 1122
PfeI GAWTC 4 cut(s) 186, 262, 521, 1385
PflMI CCANNNNNTGG 1 cut(s) 1128
PfoI TCCNGGA 2 cut(s) 499, 1449
PkrI GCNGC 3 cut(s) 50, 53, 197
PleI GAGTC 3 cut(s) 509, 1387, 1435
PpsI GAGTC 3 cut(s) 509, 1387, 1435
PpuMI RGGWCCY 1 cut(s) 811
PshBI ATTAAT 2 cut(s) 669, 1316
Psp124BI GAGCTC 1 cut(s) 1552
Psp1406I AACGTT 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 811
Psp6I CCWGG 5 cut(s) 272, 290, 499, 1112, 1449
PspGI CCWGG 5 cut(s) 272, 290, 499, 1112, 1449
PspN4I GGNNCC 3 cut(s) 730, 812, 1534
PspPI GGNCC 1 cut(s) 811
PspPPI RGGWCCY 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 195
PsuI RGATCY 1 cut(s) 652
RsaI GTAC 5 cut(s) 312, 900, 1111, 1404, 1513
RsaNI GTAC 5 cut(s) 311, 899, 1110, 1403, 1512
RseI CAYNNNNRTG 2 cut(s) 740, 1281
SacI GAGCTC 1 cut(s) 1552
SalI GTCGAC 1 cut(s) 339
SaqAI TTAA 5 cut(s) 549, 669, 1208, 1253, 1316
SatI GCNGC 3 cut(s) 49, 52, 196
Sau3AI GATC 5 cut(s) 76, 652, 976, 1099, 1357
Sau96I GGNCC 1 cut(s) 811
SchI GAGTC 3 cut(s) 509, 1388, 1435
ScrFI CCNGG 5 cut(s) 274, 292, 501, 1114, 1451
SduI GDGCHC 1 cut(s) 1552
SfaNI GCATC 2 cut(s) 547, 1426
SfcI CTRYAG 1 cut(s) 789
SinI GGWCC 1 cut(s) 811
SmiMI CAYNNNNRTG 2 cut(s) 740, 1281
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SseBI AGGCCT 1 cut(s) 913
SsiI CCGC 3 cut(s) 318, 658, 1508
SspI AATATT 1 cut(s) 1156
SspMI CTAG 6 cut(s) 491, 528, 1047, 1505, 1523, 1545
SstI GAGCTC 1 cut(s) 1552
StuI AGGCCT 1 cut(s) 913
StyD4I CCNGG 5 cut(s) 272, 290, 499, 1112, 1449
StyI CCWWGG 4 cut(s) 402, 806, 1127, 1569
TaaI ACNGT 2 cut(s) 1015, 1496
TaiI ACGT 2 cut(s) 246, 576
TaqI TCGA 2 cut(s) 340, 1575
TatI WGTACW 2 cut(s) 310, 898
TfiI GAWTC 4 cut(s) 186, 262, 521, 1385
Tru1I TTAA 5 cut(s) 549, 669, 1208, 1253, 1316
Tru9I TTAA 5 cut(s) 549, 669, 1208, 1253, 1316
TscAI CASTG 3 cut(s) 1048, 1074, 1093
TseFI GTSAC 2 cut(s) 202, 283
TseI GCWGC 3 cut(s) 48, 51, 195
Tsp45I GTSAC 2 cut(s) 202, 283
TspDTI ATGAA 6 cut(s) 365, 699, 1149, 1463, 1491, 1551
TspGWI ACGGA 1 cut(s) 1525
TspRI CASTG 3 cut(s) 1048, 1074, 1093
Van91I CCANNNNNTGG 1 cut(s) 1128
VpaK11BI GGWCC 1 cut(s) 811
VspI ATTAAT 2 cut(s) 669, 1316
XapI RAATTY 6 cut(s) 155, 858, 1004, 1247, 1341, 1478
XbaI TCTAGA 1 cut(s) 1544
XceI RCATGY 1 cut(s) 1286
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 1122
XspI CTAG 6 cut(s) 491, 528, 1047, 1505, 1523, 1545
ZraI GACGTC 1 cut(s) 244
Zsp2I ATGCAT 2 cut(s) 6, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.