Rw6G015870

Embryogenesis-associated protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
30696962 .. 30724349
27388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015870.1

Sequence Viewer

Length: 1539 bp
ATGCATTGGAAGGTGGATTGGTGGGGTCTATGTGCAACTTTAGCGAGCAGCAGCCCTTACCTTGTTTTGCTGAACGATCTCCTTCTCATTCCTATTTGGCACTACATCTTGGCCTTCCTCACAATCTCCTTCGCATTCCTCTACTATTTCCTTGAATTCCATTTCCTCCATGACCTTTTCACCGGATTCAGAGGCTGCCCTGTCACCTTGACCTACCACTCCTCCTCCCATATCTACCATGACGTCGTTTCCAACCCTCATGTACAGACCGCCTTCCTCAGTATCTTTGGTCGACCTCCACTTTTCAACTACCGGAGACAACTTTTTCATTTATCTGATGGTGGAACTATTGCCTTGGATTGGTTACTGAACTCTGATGTTCTGGGAAATAACTTTGACATAACAACTGCTATTCCGAAAGATGATATAAACCCGATTGTGCTAGCCATTCCTGGATTGACAAGCGACTCCGAATCTCCTAGTATAAAGCATCTTGCTTTTAACACGGCGCAAAAGGGATGGAACGTTGTTGTTACCAACCACAGAGGTTTGGGAGGTGTTCCAATTACTTCCGATTGCTTTTATCATGCTGGTTGGACAGAGGATCTGCGGGCAGTCATTAATCATCTCCATCATGAATACCCCAACGCTCCTTTATTTGTTGTTGGAATGAGTATGGGAGCCAACATTTTGGTGAAATATCTTGGGGAGGATGGAGATAGTATTCCAGTTGCCGGAGCTGTAGCAATATGTTCTCCTTGGGACCTTCTGATTAGTGATAGATTTTTACGCCGTAGGCTGTTGCAAAAAATTTATGACAGAGTTCTTGCAATTGGCCTTCAAGGCTATGTACAATTGCACAGGCCTATGTTTTCTCGGCTGGCTAATTGGGAAGGTATAGAAAAGTCTCGTTGTATTCGTGATTTTGATCATCATGCTACTCGCCTTGTTGGGAAATTTGAGACTGTGGACACATATTACAGGCATTGTAGCAGTGCTAGTTATGTAGGAAATGTGTCAGTGCCACTACTCTGTATCAGTGCATTAGATGATCCACTTTGTACCAGGGAAGCCATTCCTTGGGATGAATGCAGGGCAAACTCAAATATTGTATTGGCTACCACAAAGCGTGGAGGACACTTAGCTTTCTTTGAAGGATTAACTGCTACTGGCATTTGGTGGGTAAGGGCTGTGGACGAATTTTTAAGAGTTTTACATTGTAGCCAACATATGCATGTAAAGAAGGTGGCAAGTTCTTACCCACCATTAATAATTGAACCAATAGAAGGTAAAATTTCAGCAGAGAGAGATCAACAGAGGCCACAGCCAGAGTCAGATTCTTTGGCTAATGTCGTACAATCTTCTGAACAAGCTACTACGCCTCTTGATGTAATTGCTCCTGCTAGAAGATGCTTAGATCTGCTATCTCGACAGAGTAGGTGGCCATTGTGGTTACTTGTTTATATTGTTATTATGACAAGTTGGCCGGTGGTAGGTTATGTTCTCCAGATTGCAAAGAAGATCAAAAATCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

57.88

Weight (kDa)

6.9

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 145 - 260 6.1e-10 alpha/beta hydrolase fold
Hydrolase_4 PF12146 146 - 256 2.2e-12 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 1080
AccI GTMKAC 1 cut(s) 292
AciI CCGC 2 cut(s) 270, 610
AclI AACGTT 1 cut(s) 525
AclWI GGATC 2 cut(s) 612, 1046
AcoI YGGCCR 2 cut(s) 1442, 1484
AcsI RAATTY 5 cut(s) 155, 810, 956, 1199, 1293
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 4 cut(s) 264, 852, 1063, 1356
AfiI CCNNNNNNNGG 5 cut(s) 360, 734, 1080, 1286, 1493
AgsI TTSAA 5 cut(s) 155, 307, 842, 1154, 1277
AjnI CCWGG 2 cut(s) 451, 1064
AluBI AGCT 3 cut(s) 740, 1145, 1373
AluI AGCT 3 cut(s) 740, 1145, 1373
Alw26I GTCTC 3 cut(s) 310, 912, 956
AlwI GGATC 2 cut(s) 612, 1046
AlwNI CAGNNNCTG 1 cut(s) 195
AoxI GGCC 6 cut(s) 111, 835, 863, 1319, 1442, 1484
ApeKI GCWGC 3 cut(s) 48, 51, 195
ApoI RAATTY 5 cut(s) 155, 810, 956, 1199, 1293
AseI ATTAAT 2 cut(s) 621, 1268
Asp700I GAANNNNTTC 1 cut(s) 1074
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 3 cut(s) 172, 196, 706
AsuNHI GCTAGC 1 cut(s) 442
AvaII GGWCC 1 cut(s) 763
BalI TGGCCA 1 cut(s) 1444
BbvI GCAGC 3 cut(s) 60, 63, 182
BccI CCATC 4 cut(s) 332, 513, 639, 707
BceAI ACGGC 2 cut(s) 522, 777
BciT130I CCWGG 2 cut(s) 453, 1066
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 3 cut(s) 310, 912, 956
BfaI CTAG 4 cut(s) 443, 480, 999, 1404
BfmI CTRYAG 1 cut(s) 741
BglI GCCNNNNNGGC 1 cut(s) 843
BglII AGATCT 1 cut(s) 1417
BisI GCNGC 3 cut(s) 49, 52, 196
BlsI GCNGC 3 cut(s) 50, 53, 197
Bme1390I CCNGG 2 cut(s) 453, 1066
Bme18I GGWCC 1 cut(s) 763
BmgT120I GGNCC 1 cut(s) 763
BmiI GGNNCC 2 cut(s) 682, 764
BmrFI CCNGG 2 cut(s) 453, 1066
BmsI GCATC 2 cut(s) 499, 1400
BmtI GCTAGC 1 cut(s) 446
BpmI CTGGAG 1 cut(s) 1490
BsaBI GATNNNNATC 1 cut(s) 927
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 354, 758, 1065, 1079
BsaWI WCCGGW 2 cut(s) 182, 312
BsaXI ACNNNNNCTCC 4 cut(s) 206, 209, 236, 239
Bsc4I CCNNNNNNNGG 5 cut(s) 360, 734, 1080, 1286, 1493
Bse118I RCCGGY 1 cut(s) 1486
Bse1I ACTGG 2 cut(s) 728, 1174
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 2 cut(s) 453, 1066
BseDI CCNNGG 4 cut(s) 354, 758, 1065, 1079
BseGI GGATG 3 cut(s) 524, 718, 1090
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 5 cut(s) 360, 734, 1080, 1286, 1493
BseMII CTCAG 1 cut(s) 292
BseNI ACTGG 2 cut(s) 728, 1174
BseRI GAGGAG 2 cut(s) 211, 214
BseXI GCAGC 3 cut(s) 60, 63, 182
BshFI GGCC 6 cut(s) 113, 837, 865, 1321, 1444, 1486
BsiSI CCGG 4 cut(s) 183, 313, 735, 1487
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 5 cut(s) 360, 734, 1080, 1286, 1493
BsmAI GTCTC 3 cut(s) 310, 912, 956
BsmFI GGGAC 1 cut(s) 776
BsmI GAATGC 2 cut(s) 134, 1094
BsnI GGCC 6 cut(s) 113, 837, 865, 1321, 1444, 1486
Bsp1407I TGTACA 2 cut(s) 262, 850
Bsp143I GATC 7 cut(s) 76, 604, 928, 1051, 1309, 1417, 1521
BspACI CCGC 2 cut(s) 270, 610
BspANI GGCC 6 cut(s) 113, 837, 865, 1321, 1444, 1486
BspCNI CTCAG 1 cut(s) 291
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 682, 764
BspOI GCTAGC 1 cut(s) 446
BspPI GGATC 2 cut(s) 612, 1046
BsrFI RCCGGY 1 cut(s) 1486
BsrGI TGTACA 2 cut(s) 262, 850
BsrI ACTGG 2 cut(s) 728, 1174
BssAI RCCGGY 1 cut(s) 1486
BssECI CCNNGG 4 cut(s) 354, 758, 1065, 1079
BssMI GATC 7 cut(s) 76, 604, 928, 1051, 1309, 1417, 1521
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 3 cut(s) 354, 758, 1079
Bst2UI CCWGG 2 cut(s) 453, 1066
Bst4CI ACNGT 1 cut(s) 967
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 2 cut(s) 262, 850
BstC8I GCNNGC 4 cut(s) 46, 444, 612, 882
BstDEI CTNAG 3 cut(s) 278, 1141, 1414
BstF5I GGATG 3 cut(s) 524, 718, 1090
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 7 cut(s) 79, 607, 931, 1054, 1312, 1420, 1524
BstMAI GTCTC 3 cut(s) 310, 912, 956
BstMBI GATC 7 cut(s) 76, 604, 928, 1051, 1309, 1417, 1521
BstMWI GCNNNNNNNGC 2 cut(s) 41, 843
BstNI CCWGG 2 cut(s) 453, 1066
BstNSI RCATGY 1 cut(s) 1238
BstSCI CCNGG 2 cut(s) 451, 1064
BstSFI CTRYAG 1 cut(s) 741
BstV1I GCAGC 3 cut(s) 60, 63, 182
BstX2I RGATCY 2 cut(s) 604, 1417
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 2 cut(s) 604, 1417
BsuRI GGCC 6 cut(s) 113, 837, 865, 1321, 1444, 1486
BtsCI GGATG 3 cut(s) 524, 718, 1090
BtsI GCAGTG 1 cut(s) 1000
BtsIMutI CAGTG 3 cut(s) 1000, 1026, 1045
Cac8I GCNNGC 4 cut(s) 46, 444, 612, 882
CaiI CAGNNNCTG 1 cut(s) 195
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 1486
Cfr13I GGNCC 1 cut(s) 763
Csp6I GTAC 4 cut(s) 263, 851, 1062, 1355
CviAII CATG 7 cut(s) 170, 239, 260, 587, 635, 935, 1235
CviQI GTAC 4 cut(s) 263, 851, 1062, 1355
DdeI CTNAG 3 cut(s) 278, 1141, 1414
DpnI GATC 7 cut(s) 78, 606, 930, 1053, 1311, 1419, 1523
DpnII GATC 7 cut(s) 76, 604, 928, 1051, 1309, 1417, 1521
EaeI YGGCCR 2 cut(s) 1442, 1484
Eco130I CCWWGG 3 cut(s) 354, 758, 1079
Eco147I AGGCCT 1 cut(s) 865
Eco47I GGWCC 1 cut(s) 763
EcoO109I RGGNCCY 1 cut(s) 763
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 451, 1064
EcoT14I CCWWGG 3 cut(s) 354, 758, 1079
EcoT22I ATGCAT 2 cut(s) 6, 1236
ErhI CCWWGG 3 cut(s) 354, 758, 1079
FaeI CATG 7 cut(s) 173, 242, 263, 590, 638, 938, 1238
FaqI GGGAC 1 cut(s) 776
FatI CATG 7 cut(s) 169, 238, 259, 586, 634, 934, 1234
FauI CCCGC 1 cut(s) 603
FauNDI CATATG 1 cut(s) 1230
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 49, 52, 196
FokI GGATG 3 cut(s) 531, 725, 1097
Fsp4HI GCNGC 3 cut(s) 49, 52, 196
FspBI CTAG 4 cut(s) 443, 480, 999, 1404
GlaI GCGC 1 cut(s) 510
GluI GCNGC 3 cut(s) 49, 52, 196
GsuI CTGGAG 1 cut(s) 1490
HaeIII GGCC 6 cut(s) 113, 837, 865, 1321, 1444, 1486
HapII CCGG 4 cut(s) 183, 313, 735, 1487
HhaI GCGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 7 cut(s) 173, 242, 263, 590, 638, 938, 1238
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 5 cut(s) 186, 467, 473, 1331, 1337
HpaII CCGG 4 cut(s) 183, 313, 735, 1487
HphI GGTGA 3 cut(s) 172, 196, 706
Hpy166II GTNNAC 3 cut(s) 293, 970, 1195
Hpy188I TCNGA 9 cut(s) 191, 337, 376, 417, 472, 574, 771, 1336, 1366
Hpy188III TCNNGA 5 cut(s) 635, 920, 1385, 1428, 1507
Hpy8I GTNNAC 3 cut(s) 293, 970, 1195
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 967
HpyCH4IV ACGT 2 cut(s) 243, 525
HpyCH4V TGCA 9 cut(s) 4, 35, 805, 830, 859, 1043, 1092, 1234, 1514
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 843
HpyF3I CTNAG 3 cut(s) 278, 1141, 1414
HpySE526I ACGT 2 cut(s) 243, 525
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 7 cut(s) 173, 242, 263, 590, 638, 938, 1238
HspAI GCGC 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 7 cut(s) 76, 604, 928, 1051, 1309, 1417, 1521
LmnI GCTCC 4 cut(s) 655, 680, 737, 1402
Lsp1109I GCAGC 3 cut(s) 60, 63, 182
LweI GCATC 2 cut(s) 499, 1400
MaeI CTAG 4 cut(s) 443, 480, 999, 1404
MaeII ACGT 2 cut(s) 243, 525
MaeIII GTNAC 4 cut(s) 202, 363, 532, 1452
MalI GATC 7 cut(s) 78, 606, 930, 1053, 1311, 1419, 1523
MboI GATC 7 cut(s) 76, 604, 928, 1051, 1309, 1417, 1521
MboII GAAGA 3 cut(s) 1353, 1419, 1531
MfeI CAATTG 2 cut(s) 831, 854
MflI RGATCY 2 cut(s) 604, 1417
MlsI TGGCCA 1 cut(s) 1444
MluNI TGGCCA 1 cut(s) 1444
MlyI GAGTC 2 cut(s) 461, 1340
MmeI TCCRAC 3 cut(s) 276, 575, 646
Mox20I TGGCCA 1 cut(s) 1444
Mph1103I ATGCAT 2 cut(s) 6, 1236
MroXI GAANNNNTTC 1 cut(s) 1074
MscI TGGCCA 1 cut(s) 1444
MseI TTAA 5 cut(s) 501, 621, 1160, 1205, 1268
MslI CAYNNNNRTG 2 cut(s) 692, 1233
Msp20I TGGCCA 1 cut(s) 1444
MspI CCGG 4 cut(s) 183, 313, 735, 1487
MspR9I CCNGG 2 cut(s) 453, 1066
MunI CAATTG 2 cut(s) 831, 854
Mva1269I GAATGC 2 cut(s) 134, 1094
MvaI CCWGG 2 cut(s) 453, 1066
MwoI GCNNNNNNNGC 2 cut(s) 41, 843
NdeI CATATG 1 cut(s) 1230
NdeII GATC 7 cut(s) 76, 604, 928, 1051, 1309, 1417, 1521
NheI GCTAGC 1 cut(s) 442
NlaIII CATG 7 cut(s) 173, 242, 263, 590, 638, 938, 1238
NlaIV GGNNCC 2 cut(s) 682, 764
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 2 cut(s) 6, 1236
NspI RCATGY 1 cut(s) 1238
PagI TCATGA 1 cut(s) 634
PceI AGGCCT 1 cut(s) 865
PcsI WCGNNNNNNNCGW 1 cut(s) 916
PctI GAATGC 2 cut(s) 134, 1094
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 3 cut(s) 186, 473, 1337
PflMI CCANNNNNTGG 1 cut(s) 1080
PfoI TCCNGGA 1 cut(s) 451
PkrI GCNGC 3 cut(s) 50, 53, 197
PleI GAGTC 2 cut(s) 461, 1339
PpsI GAGTC 2 cut(s) 461, 1339
PpuMI RGGWCCY 1 cut(s) 763
PshBI ATTAAT 2 cut(s) 621, 1268
Psp1406I AACGTT 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 451, 1064
PspGI CCWGG 2 cut(s) 451, 1064
PspN4I GGNNCC 2 cut(s) 682, 764
PspPI GGNCC 1 cut(s) 763
PspPPI RGGWCCY 1 cut(s) 763
PsrI GAACNNNNNNTAC 2 cut(s) 1485, 1517
PstNI CAGNNNCTG 1 cut(s) 195
PsuI RGATCY 2 cut(s) 604, 1417
RsaI GTAC 4 cut(s) 264, 852, 1063, 1356
RsaNI GTAC 4 cut(s) 263, 851, 1062, 1355
RseI CAYNNNNRTG 2 cut(s) 692, 1233
SalI GTCGAC 1 cut(s) 291
SaqAI TTAA 5 cut(s) 501, 621, 1160, 1205, 1268
SatI GCNGC 3 cut(s) 49, 52, 196
Sau3AI GATC 7 cut(s) 76, 604, 928, 1051, 1309, 1417, 1521
Sau96I GGNCC 1 cut(s) 763
SchI GAGTC 2 cut(s) 461, 1340
ScrFI CCNGG 2 cut(s) 453, 1066
SfaNI GCATC 2 cut(s) 499, 1400
SfcI CTRYAG 1 cut(s) 741
SinI GGWCC 1 cut(s) 763
SmiMI CAYNNNNRTG 2 cut(s) 692, 1233
SseBI AGGCCT 1 cut(s) 865
SsiI CCGC 2 cut(s) 270, 610
SspI AATATT 1 cut(s) 1108
SspMI CTAG 4 cut(s) 443, 480, 999, 1404
StuI AGGCCT 1 cut(s) 865
StyD4I CCNGG 2 cut(s) 451, 1064
StyI CCWWGG 3 cut(s) 354, 758, 1079
TaaI ACNGT 1 cut(s) 967
TaiI ACGT 2 cut(s) 246, 528
TaqI TCGA 2 cut(s) 292, 1429
TatI WGTACW 2 cut(s) 262, 850
TfiI GAWTC 3 cut(s) 186, 473, 1337
Tru1I TTAA 5 cut(s) 501, 621, 1160, 1205, 1268
Tru9I TTAA 5 cut(s) 501, 621, 1160, 1205, 1268
TscAI CASTG 3 cut(s) 1000, 1026, 1045
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 48, 51, 195
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 317, 651, 1101
TspRI CASTG 3 cut(s) 1000, 1026, 1045
Van91I CCANNNNNTGG 1 cut(s) 1080
VpaK11BI GGWCC 1 cut(s) 763
VspI ATTAAT 2 cut(s) 621, 1268
XapI RAATTY 5 cut(s) 155, 810, 956, 1199, 1293
XceI RCATGY 1 cut(s) 1238
XmiI GTMKAC 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 4 cut(s) 443, 480, 999, 1404
ZraI GACGTC 1 cut(s) 244
Zsp2I ATGCAT 2 cut(s) 6, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.