Rmu_sc0009074.1_g000001

Embryogenesis-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009074.1
OG0004956
Physical Location & Seq
Forward (+)
1 .. 2654
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009074.1_g000001.1.cds

Sequence Viewer

Length: 765 bp
tcgcgttctattcgtgattttgatcatcatgctacccgccttgttgggaaatttgagactgtggacacatattacaggcgttgtagcagtactagttatgtaggaaatgtgtcagtcccactactctgtatcagtgcattagatgatccactttgtactagggaagccattccttgggatgaatgcagggcaaacttaaatattgtattggctaccacaaagcgcggaggacacttggctttctttgaaggattaactgcagctggcatctggtgggtaagggctgtggatgaatttttaaaagttttacatggtagccagtatatgcatgtaaagaaggtggcaagttcttacccaccattaatactggactcttcaatagatcagggtccctatgtaaacattgcagaagatggaatggtggctgcagtgggcaatgaacaggtagaagagaatagggtagaagatgtacttgaatcaggagaaggtaaaatttcagcagagcgagatcaacagaggccacagccagagtcggattctttggctggtgttgtagaatcttctgaacaagctattacgcctcttgatgtaattgctcctgttagaagacgcttacatctgctatctcgacagggtaggtggtcattgtggttgcttgtttatattgctattgtgacaagttggccagtggtaggttctgtcctccagattgcattgcaaaagaagctcagaaatgtcttacctggtgctttcttcaaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4

Protein Analysis

254

Amino Acids

28.31

Weight (kDa)

6.31

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 174
AccII CGCG 2 cut(s) 4, 225
AciI CCGC 2 cut(s) 37, 225
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 683
AcsI RAATTY 3 cut(s) 50, 293, 492
AfaI GTAC 3 cut(s) 91, 157, 471
AfiI CCNNNNNNNGG 2 cut(s) 174, 692
AgsI TTSAA 4 cut(s) 248, 378, 476, 757
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 742
AluBI AGCT 3 cut(s) 263, 572, 727
AluI AGCT 3 cut(s) 263, 572, 727
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 140
AoxI GGCC 2 cut(s) 518, 683
ApeKI GCWGC 2 cut(s) 260, 425
ApoI RAATTY 3 cut(s) 50, 293, 492
AseI ATTAAT 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 389
AvaII GGWCC 1 cut(s) 389
BalI TGGCCA 1 cut(s) 685
BbsI GAAGAC 1 cut(s) 613
BbvI GCAGC 2 cut(s) 272, 412
BccI CCATC 1 cut(s) 407
BciT130I CCWGG 1 cut(s) 744
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 50
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 2 cut(s) 93, 159
BfmI CTRYAG 2 cut(s) 258, 426
BisI GCNGC 2 cut(s) 261, 426
BlsI GCNGC 2 cut(s) 262, 427
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 2 cut(s) 390, 391
BmrFI CCNGG 1 cut(s) 744
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 613
BpmI CTGGAG 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 692
Bse1I ACTGG 3 cut(s) 319, 372, 686
Bse3DI GCAATG 3 cut(s) 402, 442, 713
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 184, 295
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 174, 692
BseMI GCAATG 3 cut(s) 402, 442, 713
BseMII CTCAG 1 cut(s) 742
BseNI ACTGG 3 cut(s) 319, 372, 686
BseXI GCAGC 2 cut(s) 272, 412
Bsh1236I CGCG 2 cut(s) 4, 225
BshFI GGCC 2 cut(s) 520, 685
BslFI GGGAC 2 cut(s) 101, 375
BslI CCNNNNNNNGG 2 cut(s) 174, 692
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 2 cut(s) 101, 375
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 2 cut(s) 520, 685
Bsp143I GATC 4 cut(s) 22, 145, 382, 508
BspACI CCGC 2 cut(s) 37, 225
BspANI GGCC 2 cut(s) 520, 685
BspCNI CTCAG 1 cut(s) 741
BspFNI CGCG 2 cut(s) 4, 225
BspLI GGNNCC 2 cut(s) 390, 391
BspMAI CTGCAG 2 cut(s) 262, 430
BspPI GGATC 1 cut(s) 140
BsrDI GCAATG 3 cut(s) 402, 442, 713
BsrI ACTGG 3 cut(s) 319, 372, 686
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 4 cut(s) 22, 145, 382, 508
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 379, 444
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 728
BstF5I GGATG 2 cut(s) 184, 295
BstFNI CGCG 2 cut(s) 4, 225
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 4 cut(s) 25, 148, 385, 511
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 4 cut(s) 22, 145, 382, 508
BstMWI GCNNNNNNNGC 1 cut(s) 724
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 742
BstSFI CTRYAG 2 cut(s) 258, 426
BstUI CGCG 2 cut(s) 4, 225
BstV1I GCAGC 2 cut(s) 272, 412
BstV2I GAAGAC 1 cut(s) 613
BsuRI GGCC 2 cut(s) 520, 685
BtsCI GGATG 2 cut(s) 184, 295
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 3 cut(s) 139, 435, 693
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 389
CseI GACGC 1 cut(s) 618
CsiI ACCWGGT 1 cut(s) 742
Csp6I GTAC 3 cut(s) 90, 156, 470
CviAII CATG 3 cut(s) 29, 311, 329
CviQI GTAC 3 cut(s) 90, 156, 470
DdeI CTNAG 1 cut(s) 728
DpnI GATC 4 cut(s) 24, 147, 384, 510
DpnII GATC 4 cut(s) 22, 145, 382, 508
DraI TTTAAA 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 683
Eam1104I CTCTTC 2 cut(s) 379, 444
EarI CTCTTC 2 cut(s) 379, 444
Eco130I CCWWGG 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 3 cut(s) 32, 314, 332
FaiI YATR 9 cut(s) 30, 70, 99, 312, 324, 326, 330, 396, 663
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 2 cut(s) 101, 375
FatI CATG 3 cut(s) 28, 310, 328
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 261, 426
FokI GGATG 2 cut(s) 191, 302
Fsp4HI GCNGC 2 cut(s) 261, 426
FspBI CTAG 2 cut(s) 93, 159
GlaI GCGC 1 cut(s) 224
GluI GCNGC 2 cut(s) 261, 426
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 2 cut(s) 520, 685
HgaI GACGC 1 cut(s) 618
HhaI GCGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 32, 314, 332
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 5 cut(s) 371, 476, 530, 536, 557
Hpy166II GTNNAC 2 cut(s) 64, 400
Hpy188I TCNGA 3 cut(s) 535, 565, 731
Hpy188III TCNNGA 5 cut(s) 14, 480, 584, 627, 706
Hpy8I GTNNAC 2 cut(s) 64, 400
HpyAV CCTTC 3 cut(s) 242, 331, 479
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 8 cut(s) 137, 186, 260, 328, 407, 428, 713, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 724
HpyF3I CTNAG 1 cut(s) 728
Hsp92II CATG 3 cut(s) 32, 314, 332
HspAI GCGC 1 cut(s) 223
KflI GGGWCCC 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 4 cut(s) 22, 145, 382, 508
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 2 cut(s) 272, 412
LweI GCATC 1 cut(s) 276
MabI ACCWGGT 1 cut(s) 742
MaeI CTAG 2 cut(s) 93, 159
MaeIII GTNAC 1 cut(s) 673
MalI GATC 4 cut(s) 24, 147, 384, 510
MboI GATC 4 cut(s) 22, 145, 382, 508
MboII GAAGA 7 cut(s) 366, 422, 461, 476, 552, 618, 745
MlsI TGGCCA 1 cut(s) 685
MluCI AATT 4 cut(s) 50, 293, 492, 591
MluNI TGGCCA 1 cut(s) 685
MlyI GAGTC 2 cut(s) 365, 539
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 4 cut(s) 221, 510, 591, 713
Mox20I TGGCCA 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 168
MscI TGGCCA 1 cut(s) 685
MseI TTAA 4 cut(s) 197, 254, 299, 362
Msp20I TGGCCA 1 cut(s) 685
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 744
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 2 cut(s) 4, 225
MwoI GCNNNNNNNGC 1 cut(s) 724
NdeII GATC 4 cut(s) 22, 145, 382, 508
NlaIII CATG 3 cut(s) 32, 314, 332
NlaIV GGNNCC 2 cut(s) 390, 391
NmuCI GTSAC 1 cut(s) 673
NsiI ATGCAT 1 cut(s) 330
NspI RCATGY 1 cut(s) 332
PctI GAATGC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 476, 536, 557
PflMI CCANNNNNTGG 1 cut(s) 174
PkrI GCNGC 2 cut(s) 262, 427
PleI GAGTC 2 cut(s) 365, 538
PpsI GAGTC 2 cut(s) 365, 538
PpuMI RGGWCCY 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 2 cut(s) 390, 391
PspPI GGNCC 1 cut(s) 389
PspPPI RGGWCCY 1 cut(s) 389
PstI CTGCAG 2 cut(s) 262, 430
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 3 cut(s) 91, 157, 471
RsaNI GTAC 3 cut(s) 90, 156, 470
SaqAI TTAA 4 cut(s) 197, 254, 299, 362
SatI GCNGC 2 cut(s) 261, 426
Sau3AI GATC 4 cut(s) 22, 145, 382, 508
Sau96I GGNCC 1 cut(s) 389
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 2 cut(s) 365, 539
ScrFI CCNGG 1 cut(s) 744
SetI ASST 9 cut(s) 265, 342, 447, 490, 574, 641, 697, 729, 745
SexAI ACCWGGT 1 cut(s) 742
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 2 cut(s) 258, 426
SinI GGWCC 1 cut(s) 389
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 4 cut(s) 50, 293, 492, 591
SsiI CCGC 2 cut(s) 37, 225
SspI AATATT 1 cut(s) 202
SspMI CTAG 2 cut(s) 93, 159
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 628
TasI AATT 4 cut(s) 50, 293, 492, 591
TatI WGTACW 3 cut(s) 89, 155, 469
TfiI GAWTC 3 cut(s) 476, 536, 557
Tru1I TTAA 4 cut(s) 197, 254, 299, 362
Tru9I TTAA 4 cut(s) 197, 254, 299, 362
TscAI CASTG 3 cut(s) 139, 435, 693
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 2 cut(s) 260, 425
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 3 cut(s) 195, 306, 453
TspRI CASTG 3 cut(s) 139, 435, 693
Van91I CCANNNNNTGG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 389
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 3 cut(s) 50, 293, 492
XceI RCATGY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 2 cut(s) 93, 159
ZrmI AGTACT 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.