Rh6BG187200

Embryogenesis-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
34587678 .. 34612734
25057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG187200.1

Sequence Viewer

Length: 1614 bp
ATGCATTGGAAGGTGGATTGGTGGGGTCTCTGTGCAACTTTAGCGAGCAGCAGCCCCTACCTTGTTTTGCTGAACGATCTCCTTCTCATTCCTATTTGGCACTACGTCTTGGCCTTCCTCACAATCTCCTTCGCATTCCTCTACTATTTCCTTGAATTCCATTTCCTCCATGACCTTTTCACCGGATTCAGAGGCTGCCCTGTCACCTTGACCTACCACTCCTCCTCCCATATCTACCATGACGTCGTTTCCAAGTGTCGGATTCTCCATTCCAGGTATTTGGTCACGCCCTGGCTCTCAAGCCCTCATGTACAGACCGCCTTCCTCAGTATCTTTGGTCGACCTCCACTTTTCAACTACCGGAGACAACTTTTTCATCTATCTGATGGTGGAACTATTGCCTTGGATTGGTTACTGAACTCTGATGTTCTGGGAAATAACTTTGACATAACAACTGCTATTCCGAAAGATGATATAAAACCGATTGTGCTAGCCATTCCTGGATTGACAAGCGACTCCGAATCTCCCAGTATAAAGCATCTTGCTTTTAACACGGCGCAAAAGGGATGGAACGTTGTTGTTACCAACCACAGAGGTTTGGGTGGTGTTCCAATTACTTCCGATTGCTTTTATGATGCTGGTTGGACAAAGGATCTGCGGGCAGTCATTAATCATCTACATCATGAATACCCCAACGCTCCTTTATTTGTTGTTGGAATGAGTATGGGAGCCAACATTTTGGTGAAATATCTTGGGGAGGATGGAGATAGTATTCCAGTTGCCGGAGCTGTAGCAATATGTTCTCCTTGGGACCTTCTGATTAGTGATAGATTTTTACGCCGTAGGCTGTTGCAAAAAATTTATGACAGAGTTCTTGCAATTGGCCTTCAAGGCTATGTACAATTACACCGGCCTATTTTTTCTCGGCTCGCTAATTTGGAAGGTATAAAAAAGTCGCGTTCTATTCGTGATTTTGATCATCATGCTACTCGCCTTGTTGGGAAATTTGAGACTGTGGACACATATTACAGACATTGTAGCAGTGCTAGTTATGTAGGAAAAGTGTCAGTGCCACTACTCTGTATCAGTGCATTAGACGATCCAGTTTGTACTTGGGAAGCCATTCCTTGGGATGAATGCAGGGCAAACTTAAATATTGTATTGGCTACCACAAAGCGTGGAGGACACTTAGCTTTCTTTGAAGGATTAACTGCTACTGGCATTTGGTGGGTAAGGGCTGTGGACGAATTCTTAAAAGTTTTACATTGTAGCCAACATATGCATGTAAATAAGGTGGCAAGTTCTTACCCACCATTAATAATTGAACCAATAGAAGGTAAAATTTCAGCAAAGAGAGATCAACAGAGGCCACAGCCAGAGTCAGATTCTTTGCCTAATGTCGTACAATCTTCTGAACAAGCTACTACGCCTCTTGATGTAATTGCTCCTGCTAGAAGATGCTTAGATCTGCTATCTCGACAGAGTGGGTGGCCATTGTGGTTGCTTGTTTATATTGCTATTCTGACAAGTTGGCCGGTGGTAGGTTCTGTTCTCCAGATTTCATTACAAAAGAAGCTCAAAAATGTCTTACTTGGCGCCTTCCTCAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

60.5

Weight (kDa)

8.65

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 159 - 371 1.2e-12 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 161 - 402 2.4e-10 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 1595
AccB7I CCANNNNNTGG 1 cut(s) 1128
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 958
AciI CCGC 2 cut(s) 318, 658
AclI AACGTT 1 cut(s) 573
AclWI GGATC 2 cut(s) 660, 1094
AcoI YGGCCR 2 cut(s) 1490, 1532
AcsI RAATTY 5 cut(s) 155, 858, 1004, 1247, 1341
AcyI GRCGYC 2 cut(s) 243, 1596
AfaI GTAC 4 cut(s) 312, 900, 1111, 1404
AfiI CCNNNNNNNGG 6 cut(s) 258, 408, 782, 1128, 1334, 1541
AgsI TTSAA 5 cut(s) 155, 355, 890, 1202, 1325
AjnI CCWGG 3 cut(s) 272, 290, 499
AluBI AGCT 4 cut(s) 788, 1193, 1421, 1576
AluI AGCT 4 cut(s) 788, 1193, 1421, 1576
Alw26I GTCTC 3 cut(s) 32, 358, 1004
AlwI GGATC 2 cut(s) 660, 1094
AlwNI CAGNNNCTG 1 cut(s) 195
AoxI GGCC 6 cut(s) 111, 883, 911, 1367, 1490, 1532
ApeKI GCWGC 3 cut(s) 48, 51, 195
ApoI RAATTY 5 cut(s) 155, 858, 1004, 1247, 1341
AseI ATTAAT 2 cut(s) 669, 1316
Asp700I GAANNNNTTC 1 cut(s) 1122
AspLEI GCGC 2 cut(s) 559, 1598
AspS9I GGNCC 1 cut(s) 811
AsuHPI GGTGA 3 cut(s) 172, 196, 754
AsuNHI GCTAGC 1 cut(s) 490
AvaII GGWCC 1 cut(s) 811
BalI TGGCCA 1 cut(s) 1492
BanI GGYRCC 1 cut(s) 1595
BbvI GCAGC 3 cut(s) 60, 63, 182
BccI CCATC 3 cut(s) 380, 561, 755
BceAI ACGGC 2 cut(s) 570, 825
BciT130I CCWGG 3 cut(s) 274, 292, 501
BclI TGATCA 1 cut(s) 976
BcoDI GTCTC 3 cut(s) 32, 358, 1004
BfaI CTAG 3 cut(s) 491, 1047, 1452
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 1 cut(s) 1599
BglI GCCNNNNNGGC 1 cut(s) 891
BglII AGATCT 1 cut(s) 1465
BisI GCNGC 3 cut(s) 49, 52, 196
BlsI GCNGC 3 cut(s) 50, 53, 197
Bme1390I CCNGG 3 cut(s) 274, 292, 501
Bme18I GGWCC 1 cut(s) 811
BmgT120I GGNCC 1 cut(s) 811
BmiI GGNNCC 3 cut(s) 730, 812, 1597
BmrFI CCNGG 3 cut(s) 274, 292, 501
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 3 cut(s) 547, 625, 1448
BmtI GCTAGC 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 1538
BpuEI CTTGAG 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 975
BsaHI GRCGYC 2 cut(s) 243, 1596
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 290, 402, 806, 1127
BsaWI WCCGGW 2 cut(s) 182, 360
BsaXI ACNNNNNCTCC 4 cut(s) 206, 209, 236, 239
Bsc4I CCNNNNNNNGG 6 cut(s) 258, 408, 782, 1128, 1334, 1541
Bse118I RCCGGY 2 cut(s) 909, 1534
Bse1I ACTGG 4 cut(s) 528, 776, 1103, 1222
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 3 cut(s) 274, 292, 501
BseDI CCNNGG 4 cut(s) 290, 402, 806, 1127
BseGI GGATG 3 cut(s) 572, 766, 1138
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 6 cut(s) 258, 408, 782, 1128, 1334, 1541
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 4 cut(s) 528, 776, 1103, 1222
BseRI GAGGAG 2 cut(s) 211, 214
BseXI GCAGC 3 cut(s) 60, 63, 182
Bsh1236I CGCG 1 cut(s) 958
BshFI GGCC 6 cut(s) 113, 885, 913, 1369, 1492, 1534
BshNI GGYRCC 1 cut(s) 1595
BsiSI CCGG 5 cut(s) 183, 361, 783, 910, 1535
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 6 cut(s) 258, 408, 782, 1128, 1334, 1541
BsmAI GTCTC 3 cut(s) 32, 358, 1004
BsmFI GGGAC 1 cut(s) 824
BsmI GAATGC 2 cut(s) 134, 1142
BsnI GGCC 6 cut(s) 113, 885, 913, 1369, 1492, 1534
Bso31I GGTCTC 1 cut(s) 32
Bsp1407I TGTACA 2 cut(s) 310, 898
Bsp143I GATC 6 cut(s) 76, 652, 976, 1099, 1357, 1465
BspACI CCGC 2 cut(s) 318, 658
BspANI GGCC 6 cut(s) 113, 885, 913, 1369, 1492, 1534
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 1 cut(s) 958
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 3 cut(s) 730, 812, 1597
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 2 cut(s) 660, 1094
BspT107I GGYRCC 1 cut(s) 1595
BspTNI GGTCTC 1 cut(s) 32
BsrFI RCCGGY 2 cut(s) 909, 1534
BsrGI TGTACA 2 cut(s) 310, 898
BsrI ACTGG 4 cut(s) 528, 776, 1103, 1222
BssAI RCCGGY 2 cut(s) 909, 1534
BssECI CCNNGG 4 cut(s) 290, 402, 806, 1127
BssMI GATC 6 cut(s) 76, 652, 976, 1099, 1357, 1465
BssNI GRCGYC 2 cut(s) 243, 1596
BssT1I CCWWGG 3 cut(s) 402, 806, 1127
Bst2UI CCWGG 3 cut(s) 274, 292, 501
Bst4CI ACNGT 1 cut(s) 1015
BstACI GRCGYC 2 cut(s) 243, 1596
BstAUI TGTACA 2 cut(s) 310, 898
BstC8I GCNNGC 4 cut(s) 46, 492, 660, 930
BstDEI CTNAG 3 cut(s) 326, 1189, 1462
BstF5I GGATG 3 cut(s) 572, 766, 1138
BstFNI CGCG 1 cut(s) 958
BstH2I RGCGCY 1 cut(s) 1599
BstHHI GCGC 2 cut(s) 559, 1598
BstKTI GATC 6 cut(s) 79, 655, 979, 1102, 1360, 1468
BstMAI GTCTC 3 cut(s) 32, 358, 1004
BstMBI GATC 6 cut(s) 76, 652, 976, 1099, 1357, 1465
BstMWI GCNNNNNNNGC 2 cut(s) 41, 891
BstNI CCWGG 3 cut(s) 274, 292, 501
BstNSI RCATGY 1 cut(s) 1286
BstSCI CCNGG 3 cut(s) 272, 290, 499
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 1 cut(s) 958
BstV1I GCAGC 3 cut(s) 60, 63, 182
BstX2I RGATCY 2 cut(s) 652, 1465
BstXI CCANNNNNNTGG 2 cut(s) 280, 739
BstYI RGATCY 2 cut(s) 652, 1465
BsuRI GGCC 6 cut(s) 113, 885, 913, 1369, 1492, 1534
BtsCI GGATG 3 cut(s) 572, 766, 1138
BtsI GCAGTG 1 cut(s) 1048
BtsIMutI CAGTG 3 cut(s) 1048, 1074, 1093
Cac8I GCNNGC 4 cut(s) 46, 492, 660, 930
CaiI CAGNNNCTG 1 cut(s) 195
CciI TCATGA 1 cut(s) 682
CfoI GCGC 2 cut(s) 559, 1598
Cfr10I RCCGGY 2 cut(s) 909, 1534
Cfr13I GGNCC 1 cut(s) 811
Csp6I GTAC 4 cut(s) 311, 899, 1110, 1403
CviAII CATG 6 cut(s) 170, 239, 308, 683, 983, 1283
CviQI GTAC 4 cut(s) 311, 899, 1110, 1403
DdeI CTNAG 3 cut(s) 326, 1189, 1462
DinI GGCGCC 1 cut(s) 1597
DpnI GATC 6 cut(s) 78, 654, 978, 1101, 1359, 1467
DpnII GATC 6 cut(s) 76, 652, 976, 1099, 1357, 1465
EaeI YGGCCR 2 cut(s) 1490, 1532
Eco130I CCWWGG 3 cut(s) 402, 806, 1127
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 811
EcoO109I RGGNCCY 1 cut(s) 811
EcoRI GAATTC 2 cut(s) 155, 1247
EcoRII CCWGG 3 cut(s) 272, 290, 499
EcoT14I CCWWGG 3 cut(s) 402, 806, 1127
EcoT22I ATGCAT 2 cut(s) 6, 1284
EgeI GGCGCC 1 cut(s) 1597
EheI GGCGCC 1 cut(s) 1597
ErhI CCWWGG 3 cut(s) 402, 806, 1127
FaeI CATG 6 cut(s) 173, 242, 311, 686, 986, 1286
FaqI GGGAC 1 cut(s) 824
FatI CATG 6 cut(s) 169, 238, 307, 682, 982, 1282
FauI CCCGC 1 cut(s) 651
FauNDI CATATG 1 cut(s) 1278
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 49, 52, 196
FokI GGATG 3 cut(s) 579, 773, 1145
Fsp4HI GCNGC 3 cut(s) 49, 52, 196
FspBI CTAG 3 cut(s) 491, 1047, 1452
GlaI GCGC 2 cut(s) 558, 1597
GluI GCNGC 3 cut(s) 49, 52, 196
GsuI CTGGAG 1 cut(s) 1538
HaeII RGCGCY 1 cut(s) 1599
HaeIII GGCC 6 cut(s) 113, 885, 913, 1369, 1492, 1534
HapII CCGG 5 cut(s) 183, 361, 783, 910, 1535
HhaI GCGC 2 cut(s) 559, 1598
Hin1I GRCGYC 2 cut(s) 243, 1596
Hin1II CATG 6 cut(s) 173, 242, 311, 686, 986, 1286
Hin6I GCGC 2 cut(s) 557, 1596
HinP1I GCGC 2 cut(s) 557, 1596
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 6 cut(s) 186, 262, 515, 521, 1379, 1385
HpaII CCGG 5 cut(s) 183, 361, 783, 910, 1535
HphI GGTGA 3 cut(s) 172, 196, 754
Hpy166II GTNNAC 3 cut(s) 341, 1018, 1243
Hpy188III TCNNGA 5 cut(s) 683, 968, 1433, 1476, 1555
Hpy8I GTNNAC 3 cut(s) 341, 1018, 1243
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4IV ACGT 3 cut(s) 105, 243, 573
HpyCH4V TGCA 7 cut(s) 4, 35, 853, 878, 1091, 1140, 1282
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 891
HpyF3I CTNAG 3 cut(s) 326, 1189, 1462
HpySE526I ACGT 3 cut(s) 105, 243, 573
Hsp92I GRCGYC 2 cut(s) 243, 1596
Hsp92II CATG 6 cut(s) 173, 242, 311, 686, 986, 1286
HspAI GCGC 2 cut(s) 557, 1596
KasI GGCGCC 1 cut(s) 1595
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 6 cut(s) 76, 652, 976, 1099, 1357, 1465
LmnI GCTCC 4 cut(s) 703, 728, 785, 1450
Lsp1109I GCAGC 3 cut(s) 60, 63, 182
LweI GCATC 3 cut(s) 547, 625, 1448
MaeI CTAG 3 cut(s) 491, 1047, 1452
MaeII ACGT 3 cut(s) 105, 243, 573
MaeIII GTNAC 4 cut(s) 202, 283, 411, 580
MalI GATC 6 cut(s) 78, 654, 978, 1101, 1359, 1467
MboI GATC 6 cut(s) 76, 652, 976, 1099, 1357, 1465
MboII GAAGA 2 cut(s) 1401, 1467
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 2 cut(s) 652, 1465
MlsI TGGCCA 1 cut(s) 1492
MluNI TGGCCA 1 cut(s) 1492
Mly113I GGCGCC 1 cut(s) 1596
MlyI GAGTC 2 cut(s) 509, 1388
MmeI TCCRAC 3 cut(s) 239, 623, 694
Mox20I TGGCCA 1 cut(s) 1492
Mph1103I ATGCAT 2 cut(s) 6, 1284
MroXI GAANNNNTTC 1 cut(s) 1122
MscI TGGCCA 1 cut(s) 1492
MseI TTAA 6 cut(s) 549, 669, 1151, 1208, 1253, 1316
MslI CAYNNNNRTG 2 cut(s) 740, 1281
Msp20I TGGCCA 1 cut(s) 1492
MspI CCGG 5 cut(s) 183, 361, 783, 910, 1535
MspR9I CCNGG 3 cut(s) 274, 292, 501
MunI CAATTG 1 cut(s) 879
Mva1269I GAATGC 2 cut(s) 134, 1142
MvaI CCWGG 3 cut(s) 274, 292, 501
MvnI CGCG 1 cut(s) 958
MwoI GCNNNNNNNGC 2 cut(s) 41, 891
NarI GGCGCC 1 cut(s) 1596
NdeI CATATG 1 cut(s) 1278
NdeII GATC 6 cut(s) 76, 652, 976, 1099, 1357, 1465
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 6 cut(s) 173, 242, 311, 686, 986, 1286
NlaIV GGNNCC 3 cut(s) 730, 812, 1597
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 2 cut(s) 202, 283
NsiI ATGCAT 2 cut(s) 6, 1284
NspI RCATGY 1 cut(s) 1286
PagI TCATGA 1 cut(s) 682
PctI GAATGC 2 cut(s) 134, 1142
PdmI GAANNNNTTC 1 cut(s) 1122
PfeI GAWTC 4 cut(s) 186, 262, 521, 1385
PflMI CCANNNNNTGG 1 cut(s) 1128
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 3 cut(s) 50, 53, 197
PleI GAGTC 2 cut(s) 509, 1387
PluTI GGCGCC 1 cut(s) 1599
PpsI GAGTC 2 cut(s) 509, 1387
PpuMI RGGWCCY 1 cut(s) 811
PshBI ATTAAT 2 cut(s) 669, 1316
Psp1406I AACGTT 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 811
Psp6I CCWGG 3 cut(s) 272, 290, 499
PspGI CCWGG 3 cut(s) 272, 290, 499
PspN4I GGNNCC 3 cut(s) 730, 812, 1597
PspPI GGNCC 1 cut(s) 811
PspPPI RGGWCCY 1 cut(s) 811
PsrI GAACNNNNNNTAC 2 cut(s) 1533, 1565
PstNI CAGNNNCTG 1 cut(s) 195
PsuI RGATCY 2 cut(s) 652, 1465
RsaI GTAC 4 cut(s) 312, 900, 1111, 1404
RsaNI GTAC 4 cut(s) 311, 899, 1110, 1403
RseI CAYNNNNRTG 2 cut(s) 740, 1281
SalI GTCGAC 1 cut(s) 339
SaqAI TTAA 6 cut(s) 549, 669, 1151, 1208, 1253, 1316
SatI GCNGC 3 cut(s) 49, 52, 196
Sau3AI GATC 6 cut(s) 76, 652, 976, 1099, 1357, 1465
Sau96I GGNCC 1 cut(s) 811
SchI GAGTC 2 cut(s) 509, 1388
ScrFI CCNGG 3 cut(s) 274, 292, 501
SfaNI GCATC 3 cut(s) 547, 625, 1448
SfcI CTRYAG 1 cut(s) 789
SfoI GGCGCC 1 cut(s) 1597
SinI GGWCC 1 cut(s) 811
SmiMI CAYNNNNRTG 2 cut(s) 740, 1281
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SsiI CCGC 2 cut(s) 318, 658
SspDI GGCGCC 1 cut(s) 1595
SspI AATATT 1 cut(s) 1156
SspMI CTAG 3 cut(s) 491, 1047, 1452
StyD4I CCNGG 3 cut(s) 272, 290, 499
StyI CCWWGG 3 cut(s) 402, 806, 1127
TaaI ACNGT 1 cut(s) 1015
TaiI ACGT 3 cut(s) 108, 246, 576
TaqI TCGA 2 cut(s) 340, 1477
TatI WGTACW 3 cut(s) 310, 898, 1109
TfiI GAWTC 4 cut(s) 186, 262, 521, 1385
Tru1I TTAA 6 cut(s) 549, 669, 1151, 1208, 1253, 1316
Tru9I TTAA 6 cut(s) 549, 669, 1151, 1208, 1253, 1316
TscAI CASTG 3 cut(s) 1048, 1074, 1093
TseFI GTSAC 2 cut(s) 202, 283
TseI GCWGC 3 cut(s) 48, 51, 195
Tsp45I GTSAC 2 cut(s) 202, 283
TspDTI ATGAA 4 cut(s) 365, 699, 1149, 1551
TspRI CASTG 3 cut(s) 1048, 1074, 1093
Van91I CCANNNNNTGG 1 cut(s) 1128
VpaK11BI GGWCC 1 cut(s) 811
VspI ATTAAT 2 cut(s) 669, 1316
XapI RAATTY 5 cut(s) 155, 858, 1004, 1247, 1341
XceI RCATGY 1 cut(s) 1286
XcmI CCANNNNNNNNNTGG 1 cut(s) 1110
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 1122
XspI CTAG 3 cut(s) 491, 1047, 1452
ZraI GACGTC 1 cut(s) 244
Zsp2I ATGCAT 2 cut(s) 6, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.