pycom10g07840

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013810
Physical Location & Seq
Reverse (-)
9613588 .. 9614760
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGCGTAACTTCTTCATACATATTCTGTTGGTTGTTATCGTTGACCGCGATGAAACTTTCGCAAACTCGTGGGCCCCAGTGAAAAGTTCCAATTTTCCATCTTTAGATAACGTCACCTTCCGCAGTCAAAACGGCGCGTGTGTCTCCCGCCCTTTTGAATCCCAAACTACGGTCCACTGCTACACAAATGTCGTCCACGTCATCCTCCCAAGCATATATAAATCCCGCACCTCTTTCTCCCCAACTCAAAAATTCAAAGCTTTTCCCACCACCACCACCACAAACATTCTCAACTTTCTCTCTCTAGAAAACACCATGCAACCTTCATACAAGCGATTCAAGCCCTCCGACTCCCAGCCAGCCCACTCGGCCCCTCCTCCGTTTCAGCCTTCGCCACCGCCTCCCCGCCTCACCCAAGATCAAGAATACACGGTAATTGTCTCTACGCTTCGAAACGTCGTCGCTGGAACCGCCACAGCCGCCTCCGTGGACTTGAATTCGCTCCTCCCCCCACTACAATGCGCTGCCACTTTCTCTCCCCGCTATACTACAAGTACTAGCTGCTCCAGCAACACTCTCTTGGTGCCGTCCGATTTGGACACCTGCGACGTGTGCAAAATCAAGGGGTGTCTCGGGTGTACTTTGTTCCCGCCAGCAGCCCAGGAGGAAAAGGGAAGTAGTAGTAACAAAAGAGGGCCGAAGAAGAGGGTGAAGAAGAACTACAGGGGAGTGAGGCAGCGGCCTTGGGGTAAATGGGCTGCCGAGATTCGAGACCCGAGACGGGCGACTCGGGTCTGGCTAGGCACTTTTACAACGGCTGAGGAGGCGGCCCGGGCTTACGACAAAGCTGCGATCGAGTTTCGGGGGCCAAGAGCGAAGCTCAATTTTCCGTTTCCGGACACAACATTGGTGACCCAAGAAAGTAATTCATCACAACCACAACAGCAACAAGTAGTTACAGAGCAAAGGAATAAAAATGTCGAATTTTCGGGGGAAGTTGAAACGACGGGGATTATGAAGGAAAATGAGTTACTGGAAGAGGACTTCCAACAGTGGATGATGATGCTGGATGCTACTAATAATTCTTCGGATTCAGGAAATGTTCATATATAG

Protein Analysis

371

Amino Acids

41.31

Weight (kDa)

8.96

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 240 - 289 6.5e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34410
fragaria_vesca FvH4_2g06050 FvH4_2g06060
malus_domestica MD05G1080900.v1.1 MD10G1094700.v1.1
prunus_persica Prupe.8G125100_v2.0.a1
pyrus_communis pycom05g07360 pycom10g07840
rosa_chinensis RchiOBHm_Chr6g0257181
rosa_laevigata RLG00000014680
rosa_multiflora Rmu_sc0001228.1_g000009
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092200 Rh6BG083100 Rh6CG079800 Rh6DG075400
rosa_wichuraiana Rw6G007980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 611
Acc36I ACCTGC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 583
AccII CGCG 2 cut(s) 48, 137
AccIII TCCGGA 1 cut(s) 895
AcsI RAATTY 3 cut(s) 251, 496, 983
AfaI GTAC 2 cut(s) 556, 640
AfiI CCNNNNNNNGG 2 cut(s) 169, 781
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 5 cut(s) 158, 256, 340, 496, 1001
AjiI CACGTC 2 cut(s) 199, 610
AjnI CCWGG 1 cut(s) 660
AluBI AGCT 4 cut(s) 260, 561, 848, 880
AluI AGCT 4 cut(s) 260, 561, 848, 880
Alw26I GTCTC 5 cut(s) 148, 445, 635, 765, 772
Ama87I CYCGRG 4 cut(s) 632, 775, 789, 831
Aor13HI TCCGGA 1 cut(s) 895
AoxI GGCC 6 cut(s) 72, 369, 695, 740, 828, 866
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 6 cut(s) 524, 561, 656, 736, 758, 848
ApoI RAATTY 3 cut(s) 251, 496, 983
AspLEI GCGC 2 cut(s) 137, 524
AspS9I GGNCC 7 cut(s) 72, 73, 172, 370, 695, 829, 866
AsuC2I CCSGG 2 cut(s) 832, 833
AsuHPI GGTGA 4 cut(s) 106, 403, 721, 922
AsuII TTCGAA 1 cut(s) 451
AvaI CYCGRG 4 cut(s) 632, 775, 789, 831
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 76
BarI GAAGNNNNNNTAC 2 cut(s) 704, 736
BauI CACGAG 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 6 cut(s) 511, 548, 668, 745, 748, 835
BccI CCATC 1 cut(s) 106
BceAI ACGGC 3 cut(s) 148, 571, 831
BcgI CGANNNNNNTGC 2 cut(s) 830, 864
BciT130I CCWGG 1 cut(s) 662
BcnI CCSGG 2 cut(s) 832, 833
BcoDI GTCTC 5 cut(s) 148, 445, 635, 765, 772
BfaI CTAG 3 cut(s) 305, 558, 800
BfmI CTRYAG 1 cut(s) 721
BfuAI ACCTGC 1 cut(s) 611
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 9 cut(s) 480, 525, 562, 657, 737, 740, 759, 828, 849
BlsI GCNGC 9 cut(s) 481, 526, 563, 658, 738, 741, 760, 829, 850
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 3 cut(s) 662, 832, 833
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 4 cut(s) 632, 775, 789, 831
BmgBI CACGTC 2 cut(s) 199, 610
BmgT120I GGNCC 7 cut(s) 72, 73, 172, 370, 695, 829, 866
BmiI GGNNCC 6 cut(s) 74, 75, 372, 469, 585, 867
BmrFI CCNGG 3 cut(s) 662, 832, 833
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 1053, 1060
BmuI ACTGGG 1 cut(s) 71
BoxI GACNNNNGTC 1 cut(s) 791
BplI GAGNNNNNCTC 2 cut(s) 864, 896
BpmI CTGGAG 1 cut(s) 550
Bpu10I CCTNAGC 1 cut(s) 819
Bpu14I TTCGAA 1 cut(s) 451
BpuMI CCSGG 2 cut(s) 832, 833
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 4 cut(s) 486, 660, 743, 831
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 781
Bse1I ACTGG 2 cut(s) 77, 1038
BseAI TCCGGA 1 cut(s) 895
BseBI CCWGG 1 cut(s) 662
BseDI CCNNGG 4 cut(s) 486, 660, 743, 831
BseGI GGATG 3 cut(s) 201, 1062, 1075
BseLI CCNNNNNNNGG 2 cut(s) 169, 781
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 2 cut(s) 77, 1038
BseRI GAGGAG 3 cut(s) 366, 494, 836
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 6 cut(s) 511, 548, 668, 745, 748, 835
BseYI CCCAGC 1 cut(s) 354
Bsh1236I CGCG 2 cut(s) 48, 137
Bsh1285I CGRYCG 1 cut(s) 855
BshFI GGCC 6 cut(s) 74, 371, 697, 742, 830, 868
BshNI GGYRCC 1 cut(s) 583
BsiEI CGRYCG 1 cut(s) 855
BsiHKCI CYCGRG 4 cut(s) 632, 775, 789, 831
BsiSI CCGG 2 cut(s) 832, 896
BslI CCNNNNNNNGG 2 cut(s) 169, 781
BsmAI GTCTC 5 cut(s) 148, 445, 635, 765, 772
BsmBI CGTCTC 1 cut(s) 772
BsnI GGCC 6 cut(s) 74, 371, 697, 742, 830, 868
Bso31I GGTCTC 1 cut(s) 765
BsoBI CYCGRG 4 cut(s) 632, 775, 789, 831
Bsp119I TTCGAA 1 cut(s) 451
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 76
Bsp13I TCCGGA 1 cut(s) 895
Bsp143I GATC 2 cut(s) 418, 852
BspANI GGCC 6 cut(s) 74, 371, 697, 742, 830, 868
BspCNI CTCAG 1 cut(s) 811
BspEI TCCGGA 1 cut(s) 895
BspFNI CGCG 2 cut(s) 48, 137
BspLI GGNNCC 6 cut(s) 74, 75, 372, 469, 585, 867
BspMI ACCTGC 1 cut(s) 611
BspT104I TTCGAA 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 765
BsrI ACTGG 2 cut(s) 77, 1038
BssECI CCNNGG 4 cut(s) 486, 660, 743, 831
BssMI GATC 2 cut(s) 418, 852
BssSI CACGAG 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 743
Bst2BI CACGAG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 662
Bst4CI ACNGT 3 cut(s) 172, 433, 1053
Bst6I CTCTTC 2 cut(s) 698, 1032
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 360, 654
BstDEI CTNAG 1 cut(s) 819
BstDSI CCRYGG 1 cut(s) 486
BstEII GGTNACC 1 cut(s) 910
BstF5I GGATG 3 cut(s) 201, 1062, 1075
BstFNI CGCG 2 cut(s) 48, 137
BstHHI GCGC 2 cut(s) 137, 524
BstKTI GATC 2 cut(s) 421, 855
BstMAI GTCTC 5 cut(s) 148, 445, 635, 765, 772
BstMBI GATC 2 cut(s) 418, 852
BstMCI CGRYCG 1 cut(s) 855
BstMWI GCNNNNNNNGC 8 cut(s) 340, 368, 470, 479, 567, 612, 824, 833
BstNI CCWGG 1 cut(s) 662
BstPAI GACNNNNGTC 1 cut(s) 791
BstPI GGTNACC 1 cut(s) 910
BstSCI CCNGG 3 cut(s) 660, 830, 831
BstSFI CTRYAG 1 cut(s) 721
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 48, 137
BstV1I GCAGC 6 cut(s) 511, 548, 668, 745, 748, 835
BsuRI GGCC 6 cut(s) 74, 371, 697, 742, 830, 868
BtgI CCRYGG 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 63
BtrI CACGTC 2 cut(s) 199, 610
BtsCI GGATG 3 cut(s) 201, 1062, 1075
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 3 cut(s) 84, 175, 1058
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 2 cut(s) 360, 654
CfoI GCGC 2 cut(s) 137, 524
Cfr13I GGNCC 7 cut(s) 72, 73, 172, 370, 695, 829, 866
Cfr9I CCCGGG 1 cut(s) 831
Csp6I GTAC 2 cut(s) 555, 639
CviAII CATG 1 cut(s) 316
CviQI GTAC 2 cut(s) 555, 639
DdeI CTNAG 1 cut(s) 819
DpnI GATC 2 cut(s) 420, 854
DpnII GATC 2 cut(s) 418, 852
Eam1104I CTCTTC 2 cut(s) 698, 1032
EarI CTCTTC 2 cut(s) 698, 1032
Eco130I CCWWGG 1 cut(s) 743
Eco24I GRGCYC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 172
Eco88I CYCGRG 4 cut(s) 632, 775, 789, 831
Eco91I GGTNACC 1 cut(s) 910
EcoO109I RGGNCCY 1 cut(s) 73
EcoO65I GGTNACC 1 cut(s) 910
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 660
EcoT14I CCWWGG 1 cut(s) 743
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 743
Esp3I CGTCTC 1 cut(s) 772
FaeI CATG 1 cut(s) 319
FatI CATG 1 cut(s) 315
FauI CCCGC 5 cut(s) 155, 233, 413, 548, 657
Fnu4HI GCNGC 9 cut(s) 480, 525, 562, 657, 737, 740, 759, 828, 849
FokI GGATG 3 cut(s) 188, 1069, 1082
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 9 cut(s) 480, 525, 562, 657, 737, 740, 759, 828, 849
FspBI CTAG 3 cut(s) 305, 558, 800
GlaI GCGC 2 cut(s) 136, 523
GluI GCNGC 9 cut(s) 480, 525, 562, 657, 737, 740, 759, 828, 849
GsaI CCCAGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 550
HaeIII GGCC 6 cut(s) 74, 371, 697, 742, 830, 868
HapII CCGG 2 cut(s) 832, 896
HhaI GCGC 2 cut(s) 137, 524
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 2 cut(s) 135, 522
HinP1I GCGC 2 cut(s) 135, 522
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 6 cut(s) 158, 336, 350, 766, 787, 1091
HpaII CCGG 2 cut(s) 832, 896
HphI GGTGA 4 cut(s) 106, 403, 721, 922
Hpy166II GTNNAC 5 cut(s) 43, 175, 196, 490, 639
Hpy188I TCNGA 3 cut(s) 349, 592, 1090
Hpy188III TCNNGA 5 cut(s) 305, 422, 770, 896, 1095
Hpy8I GTNNAC 5 cut(s) 43, 175, 196, 490, 639
Hpy99I CGWCG 4 cut(s) 461, 464, 611, 1009
HpyAV CCTTC 4 cut(s) 127, 333, 399, 1012
HpyCH4III ACNGT 3 cut(s) 172, 433, 1053
HpyCH4IV ACGT 4 cut(s) 111, 198, 456, 609
HpyCH4V TGCA 2 cut(s) 319, 615
HpyF10VI GCNNNNNNNGC 8 cut(s) 340, 368, 470, 479, 567, 612, 824, 833
HpyF3I CTNAG 1 cut(s) 819
HpySE526I ACGT 4 cut(s) 111, 198, 456, 609
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 2 cut(s) 135, 522
Kpn2I TCCGGA 1 cut(s) 895
Kzo9I GATC 2 cut(s) 418, 852
LmnI GCTCC 2 cut(s) 507, 569
Lsp1109I GCAGC 6 cut(s) 511, 548, 668, 745, 748, 835
LweI GCATC 2 cut(s) 1053, 1060
MaeI CTAG 3 cut(s) 305, 558, 800
MaeII ACGT 4 cut(s) 111, 198, 456, 609
MaeIII GTNAC 6 cut(s) 5, 112, 683, 910, 955, 1029
MalI GATC 2 cut(s) 420, 854
MboI GATC 2 cut(s) 418, 852
MboII GAAGA 7 cut(s) 4, 712, 715, 724, 727, 1049, 1077
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 8 cut(s) 91, 251, 435, 496, 883, 925, 983, 1081
MlyI GAGTC 2 cut(s) 344, 781
MmeI TCCRAC 2 cut(s) 372, 1072
MroI TCCGGA 1 cut(s) 895
MslI CAYNNNNRTG 1 cut(s) 517
MspA1I CMGCKG 1 cut(s) 739
MspI CCGG 2 cut(s) 832, 896
MspR9I CCNGG 3 cut(s) 662, 832, 833
MvaI CCWGG 1 cut(s) 662
MvnI CGCG 2 cut(s) 48, 137
MwoI GCNNNNNNNGC 8 cut(s) 340, 368, 470, 479, 567, 612, 824, 833
NciI CCSGG 2 cut(s) 832, 833
NdeII GATC 2 cut(s) 418, 852
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 6 cut(s) 74, 75, 372, 469, 585, 867
NmeAIII GCCGAG 2 cut(s) 347, 787
NmuCI GTSAC 2 cut(s) 112, 910
NspV TTCGAA 1 cut(s) 451
PaqCI CACCTGC 1 cut(s) 611
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 4 cut(s) 158, 336, 766, 1091
PkrI GCNGC 9 cut(s) 481, 526, 563, 658, 738, 741, 760, 829, 850
Ple19I CGATCG 1 cut(s) 855
PleI GAGTC 2 cut(s) 344, 781
PpsI GAGTC 2 cut(s) 344, 781
PshAI GACNNNNGTC 1 cut(s) 791
Psp6I CCWGG 1 cut(s) 660
PspEI GGTNACC 1 cut(s) 910
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 6 cut(s) 74, 75, 372, 469, 585, 867
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 7 cut(s) 72, 73, 172, 370, 695, 829, 866
PvuI CGATCG 1 cut(s) 855
RsaI GTAC 2 cut(s) 556, 640
RsaNI GTAC 2 cut(s) 555, 639
RseI CAYNNNNRTG 1 cut(s) 517
SatI GCNGC 9 cut(s) 480, 525, 562, 657, 737, 740, 759, 828, 849
Sau3AI GATC 2 cut(s) 418, 852
Sau96I GGNCC 7 cut(s) 72, 73, 172, 370, 695, 829, 866
ScaI AGTACT 1 cut(s) 556
SchI GAGTC 2 cut(s) 344, 781
ScrFI CCNGG 3 cut(s) 662, 832, 833
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 2 cut(s) 1053, 1060
SfcI CTRYAG 1 cut(s) 721
SfuI TTCGAA 1 cut(s) 451
SinI GGWCC 1 cut(s) 172
SmaI CCCGGG 1 cut(s) 833
SmiMI CAYNNNNRTG 1 cut(s) 517
SrfI GCCCGGGC 1 cut(s) 833
Sse9I AATT 8 cut(s) 91, 251, 435, 496, 883, 925, 983, 1081
SspMI CTAG 3 cut(s) 305, 558, 800
StyD4I CCNGG 3 cut(s) 660, 830, 831
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 3 cut(s) 172, 433, 1053
TaiI ACGT 4 cut(s) 114, 201, 459, 612
TaqI TCGA 4 cut(s) 451, 769, 855, 981
TasI AATT 8 cut(s) 91, 251, 435, 496, 883, 925, 983, 1081
TatI WGTACW 2 cut(s) 554, 638
TauI GCSGC 3 cut(s) 482, 742, 830
TfiI GAWTC 4 cut(s) 158, 336, 766, 1091
TscAI CASTG 3 cut(s) 84, 182, 1058
TseFI GTSAC 2 cut(s) 112, 910
TseI GCWGC 6 cut(s) 524, 561, 656, 736, 758, 848
Tsp45I GTSAC 2 cut(s) 112, 910
TspDTI ATGAA 6 cut(s) 4, 66, 315, 918, 1031, 1094
TspGWI ACGGA 3 cut(s) 369, 475, 879
TspMI CCCGGG 1 cut(s) 831
TspRI CASTG 3 cut(s) 84, 182, 1058
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 3 cut(s) 251, 496, 983
XbaI TCTAGA 1 cut(s) 304
XmaI CCCGGG 1 cut(s) 831
XspI CTAG 3 cut(s) 305, 558, 800
ZrmI AGTACT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.