Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Reverse (-)

11183158 .. 11185731

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAAATGGCGGAAAATGGTGGGTTCGAGGGGGATCATTTGGCGGTAACAGAGGGCCCCGGTTTCTCTCAGCTACTCTTCCCGGCTGACGAAGTCGTGAACCTTGCCGTGGACTCCGACCAGACCTTTAACTACACCCGCCCGTCTACTTATACCACCCAGATTAAGCCACCCAAAATCCTCTGCTTCGGAAACTACGACCAAACCCACGGAAACGGCGTGGAAATTGGGTTTTTGGAAACCGCCAAGAAATCGGCCGCCGCATGCAGCGAGTCCTCATCCGTTTCTTCCACCGGCACCGCCAGCATCAACGCCTTGCCCAAGTCCAACAATAAAAGGCAAAGGGGTTCGGCTCCGATCAGCAGCACAGCTACTCCTCCAACCCAGACAGCCGCTAAAAAGGCGAAATCCGAGAATCCCACATCGGCCGGCAACGGAAAGGTCCAACCCTTCAACAAAAACAGAACTCCAAAAAAGGAAAGAGAAGCTTGGAGAACGAATCACAGCGCTGCAGCAGCTCGTTTCACCATACGGCAAGACGGACACGGCATCGGTGCTTCACGAAGCGATGGGATACATCAGATTTCTGCAGGAGCAGGTTCAGGTGCTGTGCTCGCCTTACCTTCAACGCCAGACTCCTTTACCTGTCCATGGTGGAGAGGTGAAACAAGAAGGAAGAAGAAGCGAGCTGAGGAGCCGAGGACTATGCCTGGTCCCAATGGAGTACACAACGCATGCGGGGAACAGCAACGGTGCGGACTTTTGGTCACCGGCCATGGCCAACATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

27.96

Weight (kDa)

9.53

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	4 cut(s)	255, 426, 772, 778
AfaI	GTAC	1 cut(s)	726
AfeI	AGCGCT	1 cut(s)	508
AfiI	CCNNNNNNNGG	2 cut(s)	109, 651
AgsI	TTSAA	2 cut(s)	454, 627
AhdI	GACNNNNNGTC	1 cut(s)	764
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	5 cut(s)	73, 371, 488, 518, 689
AluI	AGCT	5 cut(s)	73, 371, 488, 518, 689
Alw21I	GWGCWC	1 cut(s)	615
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	608
Aor51HI	AGCGCT	1 cut(s)	508
AoxI	GGCC	5 cut(s)	55, 255, 426, 772, 778
ApaI	GGGCCC	1 cut(s)	59
ApeKI	GCWGC	5 cut(s)	267, 363, 509, 512, 515
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	4 cut(s)	55, 56, 442, 713
AsuC2I	CCSGG	2 cut(s)	60, 83
AsuHPI	GGTGA	3 cut(s)	517, 674, 760
AvaII	GGWCC	2 cut(s)	442, 713
BaeGI	GKGCMC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	780
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	615
BbvCI	CCTCAGC	1 cut(s)	690
BbvI	GCAGC	5 cut(s)	279, 375, 496, 524, 527
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	4 cut(s)	92, 232, 548, 562
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BciT130I	CCWGG	1 cut(s)	711
BciVI	GTATCC	1 cut(s)	567
BcnI	CCSGG	2 cut(s)	60, 83
BfmI	CTRYAG	2 cut(s)	510, 588
BfoI	RGCGCY	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	8 cut(s)	258, 261, 268, 364, 393, 510, 513, 516
BlsI	GCNGC	8 cut(s)	259, 262, 269, 365, 394, 511, 514, 517
Bme1390I	CCNGG	3 cut(s)	60, 83, 711
Bme18I	GGWCC	2 cut(s)	442, 713
BmeRI	GACNNNNNGTC	1 cut(s)	764
BmgT120I	GGNCC	4 cut(s)	55, 56, 442, 713
BmiI	GGNNCC	6 cut(s)	57, 58, 298, 354, 696, 715
BmrFI	CCNGG	3 cut(s)	60, 83, 711
BmsI	GCATC	2 cut(s)	315, 558
Bpu10I	CCTNAGC	1 cut(s)	690
BpuMI	CCSGG	2 cut(s)	60, 83
BsaJI	CCNNGG	6 cut(s)	58, 108, 208, 650, 698, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 651
Bse118I	RCCGGY	3 cut(s)	293, 428, 770
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	6 cut(s)	58, 108, 208, 650, 698, 775
BseGI	GGATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	109, 651
BseMII	CTCAG	2 cut(s)	83, 681
BseRI	GAGGAG	2 cut(s)	366, 707
BseSI	GKGCMC	1 cut(s)	59
BseX3I	CGGCCG	2 cut(s)	255, 426
BseXI	GCAGC	5 cut(s)	279, 375, 496, 524, 527
Bsh1285I	CGRYCG	2 cut(s)	258, 429
BshFI	GGCC	5 cut(s)	57, 257, 428, 774, 780
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	2 cut(s)	258, 429
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	5 cut(s)	60, 83, 294, 429, 771
BslFI	GGGAC	1 cut(s)	699
BslI	CCNNNNNNNGG	2 cut(s)	109, 651
BsmFI	GGGAC	1 cut(s)	699
BsnI	GGCC	5 cut(s)	57, 257, 428, 774, 780
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	59, 615
Bsp143I	GATC	2 cut(s)	34, 357
Bsp19I	CCATGG	2 cut(s)	650, 775
BspANI	GGCC	5 cut(s)	57, 257, 428, 774, 780
BspCNI	CTCAG	2 cut(s)	82, 682
BspLI	GGNNCC	6 cut(s)	57, 58, 298, 354, 696, 715
BspMAI	CTGCAG	2 cut(s)	514, 592
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	296
BsrFI	RCCGGY	3 cut(s)	293, 428, 770
BssAI	RCCGGY	3 cut(s)	293, 428, 770
BssECI	CCNNGG	6 cut(s)	58, 108, 208, 650, 698, 775
BssMI	GATC	2 cut(s)	34, 357
BssT1I	CCWWGG	2 cut(s)	650, 775
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	6 cut(s)	265, 304, 430, 615, 687, 736
BstDEI	CTNAG	2 cut(s)	69, 690
BstDSI	CCRYGG	4 cut(s)	108, 208, 650, 775
BstEII	GGTNACC	1 cut(s)	766
BstF5I	GGATG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	2 cut(s)	37, 360
BstMBI	GATC	2 cut(s)	34, 357
BstMCI	CGRYCG	2 cut(s)	258, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 401, 515, 614
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	2 cut(s)	267, 738
BstPI	GGTNACC	1 cut(s)	766
BstSCI	CCNGG	3 cut(s)	58, 81, 709
BstSFI	CTRYAG	2 cut(s)	510, 588
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	5 cut(s)	279, 375, 496, 524, 527
BstZI	CGGCCG	2 cut(s)	255, 426
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	5 cut(s)	57, 257, 428, 774, 780
BtgI	CCRYGG	4 cut(s)	108, 208, 650, 775
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	278
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	6 cut(s)	265, 304, 430, 615, 687, 736
CaiI	CAGNNNCTG	1 cut(s)	608
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	3 cut(s)	293, 428, 770
Cfr13I	GGNCC	4 cut(s)	55, 56, 442, 713
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	4 cut(s)	264, 651, 735, 776
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	2 cut(s)	69, 690
DpnI	GATC	2 cut(s)	36, 359
DpnII	GATC	2 cut(s)	34, 357
DriI	GACNNNNNGTC	1 cut(s)	764
EaeI	YGGCCR	4 cut(s)	255, 426, 772, 778
EagI	CGGCCG	2 cut(s)	255, 426
Eam1104I	CTCTTC	1 cut(s)	83
Eam1105I	GACNNNNNGTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	26
EclXI	CGGCCG	2 cut(s)	255, 426
Eco130I	CCWWGG	2 cut(s)	650, 775
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	442, 713
Eco47III	AGCGCT	1 cut(s)	508
Eco52I	CGGCCG	2 cut(s)	255, 426
Eco91I	GGTNACC	1 cut(s)	766
EcoO109I	RGGNCCY	2 cut(s)	55, 56
EcoO65I	GGTNACC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	2 cut(s)	650, 775
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	2 cut(s)	650, 775
FaeI	CATG	4 cut(s)	267, 654, 738, 779
FaiI	YATR	8 cut(s)	153, 265, 530, 652, 707, 736, 777, 790
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FaqI	GGGAC	1 cut(s)	699
FatI	CATG	4 cut(s)	263, 650, 734, 775
FauI	CCCGC	2 cut(s)	146, 731
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	8 cut(s)	258, 261, 268, 364, 393, 510, 513, 516
FokI	GGATG	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	8 cut(s)	258, 261, 268, 364, 393, 510, 513, 516
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	8 cut(s)	258, 261, 268, 364, 393, 510, 513, 516
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	5 cut(s)	57, 257, 428, 774, 780
HapII	CCGG	5 cut(s)	60, 83, 294, 429, 771
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	4 cut(s)	267, 654, 738, 779
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	5 cut(s)	113, 272, 415, 499, 635
HpaII	CCGG	5 cut(s)	60, 83, 294, 429, 771
HphI	GGTGA	3 cut(s)	517, 674, 760
Hpy166II	GTNNAC	4 cut(s)	100, 112, 147, 727
Hpy188I	TCNGA	5 cut(s)	118, 191, 357, 412, 582
Hpy188III	TCNNGA	2 cut(s)	97, 561
Hpy8I	GTNNAC	4 cut(s)	100, 112, 147, 727
HpyAV	CCTTC	3 cut(s)	460, 633, 666
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4V	TGCA	3 cut(s)	267, 512, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 401, 515, 614
HpyF3I	CTNAG	2 cut(s)	69, 690
Hsp92II	CATG	4 cut(s)	267, 654, 738, 779
HspAI	GCGC	1 cut(s)	507
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	34, 357
LmnI	GCTCC	3 cut(s)	358, 593, 694
Lsp1109I	GCAGC	5 cut(s)	279, 375, 496, 524, 527
LweI	GCATC	2 cut(s)	315, 558
MaeIII	GTNAC	2 cut(s)	46, 766
MalI	GATC	2 cut(s)	36, 359
MboI	GATC	2 cut(s)	34, 357
MboII	GAAGA	4 cut(s)	70, 279, 688, 691
MhlI	GDGCHC	2 cut(s)	59, 615
MlsI	TGGCCA	1 cut(s)	780
MluCI	AATT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	780
MlyI	GAGTC	3 cut(s)	107, 281, 629
MmeI	TCCRAC	4 cut(s)	141, 351, 404, 469
MnlI	CCTC	8 cut(s)	22, 46, 191, 286, 387, 653, 685, 693
Mox20I	TGGCCA	1 cut(s)	780
MroNI	GCCGGC	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	780
MseI	TTAA	2 cut(s)	129, 165
Msp20I	TGGCCA	1 cut(s)	780
MspI	CCGG	5 cut(s)	60, 83, 294, 429, 771
MspR9I	CCNGG	3 cut(s)	60, 83, 711
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	4 cut(s)	303, 401, 515, 614
NaeI	GCCGGC	1 cut(s)	430
NciI	CCSGG	2 cut(s)	60, 83
NcoI	CCATGG	2 cut(s)	650, 775
NdeII	GATC	2 cut(s)	34, 357
NgoMIV	GCCGGC	1 cut(s)	428
NlaIII	CATG	4 cut(s)	267, 654, 738, 779
NlaIV	GGNNCC	6 cut(s)	57, 58, 298, 354, 696, 715
NmeAIII	GCCGAG	1 cut(s)	723
NmuCI	GTSAC	1 cut(s)	766
NspI	RCATGY	2 cut(s)	267, 738
PaeI	GCATGC	2 cut(s)	267, 738
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 216
PdiI	GCCGGC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	415, 499
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	8 cut(s)	259, 262, 269, 365, 394, 511, 514, 517
PleI	GAGTC	3 cut(s)	107, 280, 629
PpsI	GAGTC	3 cut(s)	107, 280, 629
Psp6I	CCWGG	1 cut(s)	709
PspEI	GGTNACC	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	6 cut(s)	57, 58, 298, 354, 696, 715
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	4 cut(s)	55, 56, 442, 713
PstI	CTGCAG	2 cut(s)	514, 592
PstNI	CAGNNNCTG	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
SaqAI	TTAA	2 cut(s)	129, 165
SatI	GCNGC	8 cut(s)	258, 261, 268, 364, 393, 510, 513, 516
Sau3AI	GATC	2 cut(s)	34, 357
Sau96I	GGNCC	4 cut(s)	55, 56, 442, 713
SchI	GAGTC	3 cut(s)	107, 281, 629
ScrFI	CCNGG	3 cut(s)	60, 83, 711
SduI	GDGCHC	2 cut(s)	59, 615
SfaNI	GCATC	2 cut(s)	315, 558
SfcI	CTRYAG	2 cut(s)	510, 588
SinI	GGWCC	2 cut(s)	442, 713
SphI	GCATGC	2 cut(s)	267, 738
Sse9I	AATT	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	58, 81, 709
StyI	CCWWGG	2 cut(s)	650, 775
TaaI	ACNGT	1 cut(s)	753
TaqI	TCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	3 cut(s)	260, 263, 395
TfiI	GAWTC	2 cut(s)	415, 499
Tru1I	TTAA	2 cut(s)	129, 165
Tru9I	TTAA	2 cut(s)	129, 165
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	5 cut(s)	267, 363, 509, 512, 515
Tsp45I	GTSAC	1 cut(s)	766
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	225, 271, 450, 555
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	442, 713
XceI	RCATGY	2 cut(s)	267, 738
XmiI	GTMKAC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.