pycom10g09000

zinc finger protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0009444
Physical Location & Seq
Forward (+)
11877596 .. 11882780
5185 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGGTGGTTTGCAAATGCCGCAAGGCTACTAAGCTGTATTGTTTCGTGCACAAGGTTCCAGTTTGCGGAGAATGCATCTCTTCTCCCGAGCATCAAATATGCGTGATTCGTACTTACTCAGAATGGGTAATAGATGGAGAGTATGATTGGCCTCCGAAATGCTGCCTCTGTCATGTTGAGCTGGATGAGGGGACTGGCCCCCAAACGACTCGGCTGGGTTGCTTGCATGTAATACATACAAGTTGCCTGGTTTCACATATCAAGAGTTTCCCTTTGCATACTGCACCAGCGGGATATGTTTGTCCTACATGTTCCACACCGATGTGGCCTCCCAAGAATGTGAAAGATTCGGCATCCTGCTTTCACTCAAAGTTGAAGGAAGCTATCATGCAGACTGGCTTGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCATTGTCGACAGAATCTCGTAGTCCTCCTCCTGCATTTTCGTCTGATCCACTTGTTAGTGCATCTTTGAATGGAGGAAGGGACGATAATGCTAGCTCATCCGCAGGAAAAGATAGACCTAACGTAATTGATTTCGCAGCTACAACTGGAGCAGGACCTTCTATACATCCAGTGGCAGACATAGTGGAGATAGGAAGTCCTAGTTCGGCAGGGAATTATGTGCAAAGCACGAGTCCGCCTGGTGCTACAACACGAAAGGGTGCATTGCAAGTTGAGCGACAGAACTCTGAAATTTCATATTATGCAGACGATGAAGATGGGAATCGTAAAAAGTATTCACGTAGGGGCCCATTCCGACATAAGTTTCTTAGAGCATTGCTTCCATTCTGGTCAAGTGCGTTGCCAACTCTACCAGTGACTGCACCCCAGCGAAAAGATGGATCAATTGAAAATGATGTCCCAGAAGGTCGTCCCCGACATAAAAAATCATCAAGAATGTCAGATCCAAGAAAAATCCTACTTGTTATAGCAATCATGGCATGCATGGCGACTATGGTTATTTTGTATTACAGATTAGTGCAACGGGGTCTTGGTGAGGAGATGCCTGAAGACGAGCAGCAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

38.64

Weight (kDa)

8.3

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box_ZFPL1 PF25993 1 - 45 2.8e-21 ZFPL1-like, B-box zinc-binding domain
U-box_ZFPL1 PF25998 53 - 129 2.3e-38 ZFPL1-like, U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 440
AciI CCGC 5 cut(s) 19, 66, 290, 534, 668
AclWI GGATC 3 cut(s) 473, 880, 929
AcsI RAATTY 1 cut(s) 723
AcuI CTGAAG 1 cut(s) 1059
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 3 cut(s) 376, 502, 881
AjnI CCWGG 2 cut(s) 246, 670
AleI CACNNNNGTG 1 cut(s) 322
AluBI AGCT 5 cut(s) 34, 181, 383, 528, 572
AluI AGCT 5 cut(s) 34, 181, 383, 528, 572
Alw21I GWGCWC 1 cut(s) 51
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 3 cut(s) 473, 880, 929
AlwNI CAGNNNCTG 1 cut(s) 851
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 4 cut(s) 149, 196, 326, 778
ApaI GGGCCC 1 cut(s) 782
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 4 cut(s) 162, 569, 1048, 1051
ApoI RAATTY 1 cut(s) 723
ArsI GACNNNNNNTTYG 2 cut(s) 649, 681
AspS9I GGNCC 4 cut(s) 197, 587, 778, 779
AsuHPI GGTGA 1 cut(s) 1037
AsuNHI GCTAGC 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 587
BaeGI GKGCMC 2 cut(s) 51, 782
BanII GRGCYC 1 cut(s) 782
BauI CACGAG 1 cut(s) 661
BbsI GAAGAC 1 cut(s) 1047
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 149, 581
BccI CCATC 3 cut(s) 128, 743, 863
BciT130I CCWGG 2 cut(s) 248, 672
BfaI CTAG 2 cut(s) 525, 633
BisI GCNGC 5 cut(s) 19, 163, 570, 1049, 1052
BlsI GCNGC 5 cut(s) 20, 164, 571, 1050, 1053
Bme1390I CCNGG 2 cut(s) 248, 672
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 4 cut(s) 197, 587, 778, 779
BmiI GGNNCC 4 cut(s) 57, 199, 779, 780
BmrFI CCNGG 2 cut(s) 248, 672
BmsI GCATC 5 cut(s) 84, 100, 362, 503, 1023
BmtI GCTAGC 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 1047
BpmI CTGGAG 1 cut(s) 600
BsaAI YACGTR 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 753
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 7 cut(s) 59, 199, 400, 428, 583, 602, 845
Bse3DI GCAATG 2 cut(s) 695, 806
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 2 cut(s) 248, 672
BseGI GGATG 5 cut(s) 190, 353, 424, 530, 598
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMI GCAATG 2 cut(s) 695, 806
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 7 cut(s) 59, 199, 400, 428, 583, 602, 845
BseRI GAGGAG 2 cut(s) 450, 1043
BseSI GKGCMC 2 cut(s) 51, 782
BseXI GCAGC 2 cut(s) 149, 581
BseYI CCCAGC 2 cut(s) 214, 858
BsgI GTGCAG 2 cut(s) 267, 837
BshFI GGCC 4 cut(s) 151, 198, 328, 780
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 86
BslFI GGGAC 4 cut(s) 205, 527, 875, 888
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 4 cut(s) 205, 527, 875, 888
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 4 cut(s) 151, 198, 328, 780
BsoBI CYCGRG 1 cut(s) 86
Bsp120I GGGCCC 1 cut(s) 778
Bsp1286I GDGCHC 2 cut(s) 51, 782
Bsp143I GATC 3 cut(s) 478, 872, 934
BspACI CCGC 5 cut(s) 19, 66, 290, 534, 668
BspANI GGCC 4 cut(s) 151, 198, 328, 780
BspCNI CTCAG 1 cut(s) 131
BspLI GGNNCC 4 cut(s) 57, 199, 779, 780
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 3 cut(s) 473, 880, 929
BsrDI GCAATG 2 cut(s) 695, 806
BsrI ACTGG 7 cut(s) 59, 199, 400, 428, 583, 602, 845
BssMI GATC 3 cut(s) 478, 872, 934
BssSI CACGAG 1 cut(s) 661
Bst2BI CACGAG 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 248, 672
Bst6I CTCTTC 1 cut(s) 85
BstBAI YACGTR 1 cut(s) 773
BstC8I GCNNGC 3 cut(s) 224, 526, 973
BstDEI CTNAG 3 cut(s) 30, 118, 800
BstF5I GGATG 5 cut(s) 190, 353, 424, 530, 598
BstKTI GATC 3 cut(s) 481, 875, 937
BstMBI GATC 3 cut(s) 478, 872, 934
BstMWI GCNNNNNNNGC 5 cut(s) 18, 72, 706, 968, 977
BstNI CCWGG 2 cut(s) 248, 672
BstNSI RCATGY 3 cut(s) 230, 312, 975
BstSCI CCNGG 2 cut(s) 246, 670
BstSLI GKGCMC 2 cut(s) 51, 782
BstV1I GCAGC 2 cut(s) 149, 581
BstV2I GAAGAC 1 cut(s) 1047
BstX2I RGATCY 1 cut(s) 934
BstYI RGATCY 1 cut(s) 934
BsuRI GGCC 4 cut(s) 151, 198, 328, 780
BtsCI GGATG 5 cut(s) 190, 353, 424, 530, 598
BtsIMutI CAGTG 2 cut(s) 609, 852
Cac8I GCNNGC 3 cut(s) 224, 526, 973
CaiI CAGNNNCTG 1 cut(s) 851
Cfr13I GGNCC 4 cut(s) 197, 587, 778, 779
Csp6I GTAC 1 cut(s) 111
CviAII CATG 7 cut(s) 173, 227, 309, 388, 967, 972, 976
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 3 cut(s) 30, 118, 800
DpnI GATC 3 cut(s) 480, 874, 936
DpnII GATC 3 cut(s) 478, 872, 934
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 782
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 1059
Eco88I CYCGRG 1 cut(s) 86
EcoO109I RGGNCCY 2 cut(s) 587, 778
EcoRII CCWGG 2 cut(s) 246, 670
EcoT22I ATGCAT 2 cut(s) 77, 977
EcoT38I GRGCYC 1 cut(s) 782
FaeI CATG 7 cut(s) 176, 230, 312, 391, 970, 975, 979
FaqI GGGAC 4 cut(s) 205, 527, 875, 888
FatI CATG 7 cut(s) 172, 226, 308, 387, 966, 971, 975
FauI CCCGC 1 cut(s) 283
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 5 cut(s) 19, 163, 570, 1049, 1052
FokI GGATG 5 cut(s) 197, 340, 411, 517, 585
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 5 cut(s) 19, 163, 570, 1049, 1052
FspBI CTAG 2 cut(s) 525, 633
GluI GCNGC 5 cut(s) 19, 163, 570, 1049, 1052
GsaI CCCAGC 2 cut(s) 218, 862
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 4 cut(s) 151, 198, 328, 780
Hin1II CATG 7 cut(s) 176, 230, 312, 391, 970, 975, 979
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 6 cut(s) 106, 208, 347, 446, 664, 754
HphI GGTGA 1 cut(s) 1037
Hpy166II GTNNAC 2 cut(s) 49, 441
Hpy188I TCNGA 6 cut(s) 121, 156, 478, 721, 788, 934
Hpy188III TCNNGA 3 cut(s) 86, 262, 924
Hpy8I GTNNAC 2 cut(s) 49, 441
HpyAV CCTTC 4 cut(s) 370, 504, 600, 890
HpyCH4IV ACGT 2 cut(s) 555, 772
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 72, 706, 968, 977
HpyF3I CTNAG 3 cut(s) 30, 118, 800
HpySE526I ACGT 2 cut(s) 555, 772
Hsp92II CATG 7 cut(s) 176, 230, 312, 391, 970, 975, 979
Kzo9I GATC 3 cut(s) 478, 872, 934
LmnI GCTCC 1 cut(s) 581
Lsp1109I GCAGC 2 cut(s) 149, 581
LweI GCATC 5 cut(s) 84, 100, 362, 503, 1023
MaeI CTAG 2 cut(s) 525, 633
MaeII ACGT 2 cut(s) 555, 772
MaeIII GTNAC 1 cut(s) 847
MalI GATC 3 cut(s) 480, 874, 936
MboI GATC 3 cut(s) 478, 872, 934
MboII GAAGA 3 cut(s) 72, 758, 1052
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 2 cut(s) 51, 782
MluCI AATT 4 cut(s) 558, 646, 723, 876
MlyI GAGTC 2 cut(s) 202, 673
MmeI TCCRAC 1 cut(s) 811
MnlI CCTC 8 cut(s) 162, 176, 181, 339, 468, 471, 500, 1021
Mph1103I ATGCAT 2 cut(s) 77, 977
MslI CAYNNNNRTG 2 cut(s) 320, 322
MspA1I CMGCKG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 248, 672
MunI CAATTG 1 cut(s) 876
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 2 cut(s) 248, 672
MwoI GCNNNNNNNGC 5 cut(s) 18, 72, 706, 968, 977
NdeII GATC 3 cut(s) 478, 872, 934
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 7 cut(s) 176, 230, 312, 391, 970, 975, 979
NlaIV GGNNCC 4 cut(s) 57, 199, 779, 780
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 847
NsiI ATGCAT 2 cut(s) 77, 977
NspI RCATGY 3 cut(s) 230, 312, 975
OliI CACNNNNGTG 1 cut(s) 322
PaeI GCATGC 1 cut(s) 975
PciI ACATGT 1 cut(s) 308
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 4 cut(s) 106, 347, 446, 754
PkrI GCNGC 5 cut(s) 20, 164, 571, 1050, 1053
PleI GAGTC 2 cut(s) 202, 672
PpsI GAGTC 2 cut(s) 202, 672
Ppu21I YACGTR 1 cut(s) 773
PpuMI RGGWCCY 1 cut(s) 587
PscI ACATGT 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 246, 670
PspFI CCCAGC 2 cut(s) 214, 858
PspGI CCWGG 2 cut(s) 246, 670
PspN4I GGNNCC 4 cut(s) 57, 199, 779, 780
PspOMI GGGCCC 1 cut(s) 778
PspPI GGNCC 4 cut(s) 197, 587, 778, 779
PspPPI RGGWCCY 1 cut(s) 587
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 1 cut(s) 934
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 2 cut(s) 320, 322
SalI GTCGAC 1 cut(s) 439
SatI GCNGC 5 cut(s) 19, 163, 570, 1049, 1052
Sau3AI GATC 3 cut(s) 478, 872, 934
Sau96I GGNCC 4 cut(s) 197, 587, 778, 779
SchI GAGTC 2 cut(s) 202, 673
ScrFI CCNGG 2 cut(s) 248, 672
SduI GDGCHC 2 cut(s) 51, 782
SfaNI GCATC 5 cut(s) 84, 100, 362, 503, 1023
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 320, 322
SphI GCATGC 1 cut(s) 975
Sse9I AATT 4 cut(s) 558, 646, 723, 876
SsiI CCGC 5 cut(s) 19, 66, 290, 534, 668
SspMI CTAG 2 cut(s) 525, 633
StyD4I CCNGG 2 cut(s) 246, 670
TaiI ACGT 2 cut(s) 558, 775
TaqI TCGA 1 cut(s) 440
TasI AATT 4 cut(s) 558, 646, 723, 876
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 4 cut(s) 106, 347, 446, 754
TscAI CASTG 2 cut(s) 609, 852
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 4 cut(s) 162, 569, 1048, 1051
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 3 cut(s) 423, 717, 759
TspRI CASTG 2 cut(s) 609, 852
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 723
XceI RCATGY 3 cut(s) 230, 312, 975
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 2 cut(s) 525, 633
Zsp2I ATGCAT 2 cut(s) 77, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.